Wall clock time and date at job start Mon Mar 30 2020 03:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46905 * 110.99774 * 2 1 4 4 C 1.50689 * 109.47386 * 66.04186 * 3 2 1 5 5 H 1.08005 * 120.00256 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00207 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99964 * 359.97438 * 6 4 3 8 8 Si 1.86806 * 120.00476 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.47154 * 89.99521 * 8 6 4 10 10 H 1.48495 * 109.47102 * 210.00035 * 8 6 4 11 11 H 1.48499 * 109.46752 * 330.00035 * 8 6 4 12 12 C 1.46896 * 111.00210 * 236.04143 * 2 1 3 13 13 C 1.50698 * 109.47014 * 293.95391 * 12 2 1 14 14 C 1.38535 * 120.47096 * 104.99828 * 13 12 2 15 15 C 1.38659 * 118.50573 * 180.02562 * 14 13 12 16 16 C 1.38506 * 119.38052 * 359.97438 * 15 14 13 17 17 N 1.31560 * 120.91404 * 359.97438 * 16 15 14 18 18 C 1.32824 * 121.61841 * 0.02562 * 17 16 15 19 19 C 1.43205 * 119.73399 * 179.72447 * 18 17 16 20 20 N 3.63836 * 138.17532 * 145.12875 * 2 1 3 21 21 H 1.09000 * 109.46840 * 183.95617 * 1 2 3 22 22 H 1.08997 * 109.47419 * 303.95513 * 1 2 3 23 23 H 1.08999 * 109.46861 * 63.96009 * 1 2 3 24 24 H 1.08994 * 109.46789 * 186.04674 * 3 2 1 25 25 H 1.09005 * 109.46439 * 306.04114 * 3 2 1 26 26 H 0.96996 * 120.00329 * 180.02562 * 7 6 4 27 27 H 1.09003 * 109.47150 * 173.95041 * 12 2 1 28 28 H 1.09007 * 109.46751 * 53.95341 * 12 2 1 29 29 H 1.07995 * 120.74981 * 0.04245 * 14 13 12 30 30 H 1.07998 * 120.31181 * 179.97438 * 15 14 13 31 31 H 1.07999 * 119.54399 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 1.2983 5 1 1.0745 1.5114 2.0487 6 6 2.0266 3.3496 1.5283 7 7 2.7118 4.0020 0.6148 8 14 1.5828 4.1871 3.1380 9 1 2.6602 3.9510 4.1324 10 1 1.4298 5.6466 2.9109 11 1 0.3055 3.6293 3.6504 12 6 1.9955 -0.7660 -1.1375 13 6 1.6370 -2.2204 -0.9726 14 6 0.6293 -2.7865 -1.7364 15 6 0.3328 -4.1283 -1.5509 16 6 1.0466 -4.8590 -0.6156 17 7 1.9998 -4.2976 0.0965 18 6 2.3153 -3.0157 -0.0501 19 6 3.3562 -2.4444 0.7505 20 7 4.1803 -1.9906 1.3872 21 1 -0.3633 -1.0252 0.0709 22 1 -0.3634 0.5740 0.8524 23 1 -0.3633 0.4511 -0.9234 24 1 3.0796 1.3444 -0.1083 25 1 1.5610 1.9273 -0.8310 26 1 2.9864 4.9181 0.7767 27 1 3.0798 -0.6611 -1.1755 28 1 1.5611 -0.3873 -2.0627 29 1 0.0872 -2.1962 -2.4602 30 1 -0.4475 -4.5992 -2.1304 31 1 0.8175 -5.9041 -0.4686 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061659122.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:06 Heat of formation + Delta-G solvation = 73.522548 kcal Electronic energy + Delta-G solvation = -15330.763342 eV Core-core repulsion = 12805.694837 eV Total energy + Delta-G solvation = -2525.068505 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.47459 -36.79695 -36.04061 -33.17462 -32.34415 -31.64255 -27.48792 -26.90491 -24.85593 -24.07907 -22.06166 -20.41416 -19.19857 -16.76075 -16.48523 -15.72563 -15.18780 -14.69170 -14.43443 -14.08367 -13.80363 -13.41206 -13.09650 -12.61319 -12.54428 -12.34403 -12.02662 -11.97970 -11.37454 -11.22420 -10.95206 -10.65854 -10.55235 -9.94725 -9.87460 -9.68806 -9.28610 -8.97716 -8.45006 -7.39603 -6.04549 -4.05785 0.62916 1.12575 2.98251 3.08479 3.32655 3.38536 3.41644 3.73839 4.05336 4.41394 4.57471 4.65025 4.82668 4.92254 5.08856 5.24538 5.32250 5.42589 5.68117 5.92604 5.95912 6.04970 6.12134 6.24566 6.43994 6.66058 7.18971 7.23699 7.67737 7.73971 7.86316 7.99547 8.09873 8.45952 9.00739 9.58450 11.06466 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.036883 B = 0.006427 C = 0.006038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.976585 B = 4355.636503 C = 4636.283150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.534 5.534 3 C 0.195 3.805 4 C -0.507 4.507 5 H 0.063 0.937 6 C 0.056 3.944 7 N -0.898 5.898 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.083 3.917 13 C -0.065 4.065 14 C -0.073 4.073 15 C -0.151 4.151 16 C 0.096 3.904 17 N -0.456 5.456 18 C 0.213 3.787 19 C 0.267 3.733 20 N -0.378 5.378 21 H 0.043 0.957 22 H 0.077 0.923 23 H 0.014 0.986 24 H 0.030 0.970 25 H -0.006 1.006 26 H 0.262 0.738 27 H 0.083 0.917 28 H 0.045 0.955 29 H 0.142 0.858 30 H 0.141 0.859 31 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.416 -15.106 -7.367 17.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.259 5.259 3 C 0.070 3.930 4 C -0.546 4.546 5 H 0.081 0.919 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.199 1.199 12 C -0.046 4.046 13 C -0.070 4.070 14 C -0.099 4.099 15 C -0.171 4.171 16 C -0.064 4.064 17 N -0.166 5.166 18 C 0.074 3.926 19 C -0.051 4.051 20 N -0.054 5.054 21 H 0.062 0.938 22 H 0.096 0.904 23 H 0.033 0.967 24 H 0.048 0.952 25 H 0.012 0.988 26 H 0.071 0.929 27 H 0.101 0.899 28 H 0.063 0.937 29 H 0.160 0.840 30 H 0.158 0.842 31 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -4.431 -14.931 -5.365 16.473 hybrid contribution -1.330 1.267 -0.785 1.998 sum -5.761 -13.663 -6.151 16.053 Atomic orbital electron populations 1.22251 0.88535 0.99534 1.00905 1.62206 1.07313 1.18224 1.38137 1.19752 0.95444 0.80827 0.96947 1.21105 1.35024 0.96848 1.01573 0.91876 1.24971 0.95223 0.97321 0.96985 1.69950 1.38280 1.11518 1.34042 0.86491 0.78903 0.78365 0.83633 1.20568 1.21275 1.19851 1.21109 1.01128 0.87909 0.94421 1.20970 0.94584 0.97344 0.94117 1.21541 0.95263 0.94994 0.98111 1.22326 1.00697 0.94807 0.99293 1.22697 0.91243 1.00331 0.92093 1.67534 1.15314 1.10109 1.23657 1.16195 0.93270 0.89317 0.93770 1.24668 0.93011 0.93515 0.93876 1.81203 1.10162 1.07052 1.06990 0.93801 0.90417 0.96714 0.95162 0.98807 0.92882 0.89901 0.93696 0.84004 0.84165 0.81946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.67 9.16 60.07 0.55 1.22 16 2 N -0.53 -11.21 4.63 -245.83 -1.14 -12.35 16 3 C 0.19 5.03 4.72 -4.98 -0.02 5.01 16 4 C -0.51 -14.35 8.46 -34.45 -0.29 -14.64 16 5 H 0.06 1.78 7.12 -52.48 -0.37 1.41 16 6 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 7 N -0.90 -26.88 13.29 55.43 0.74 -26.14 16 8 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 9 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 12 C 0.08 1.40 4.47 -4.98 -0.02 1.38 16 13 C -0.06 -0.92 4.46 -104.08 -0.46 -1.38 16 14 C -0.07 -0.76 9.28 -39.32 -0.36 -1.12 16 15 C -0.15 -1.26 10.11 -39.33 -0.40 -1.66 16 16 C 0.10 0.94 11.18 -17.57 -0.20 0.74 16 17 N -0.46 -6.32 10.28 -11.16 -0.11 -6.43 16 18 C 0.21 3.31 6.58 -85.07 -0.56 2.75 16 19 C 0.27 4.96 14.21 -22.47 -0.32 4.64 16 20 N -0.38 -7.87 18.54 41.84 0.78 -7.10 16 21 H 0.04 0.70 6.89 -51.93 -0.36 0.34 16 22 H 0.08 1.59 6.76 -51.93 -0.35 1.24 16 23 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 24 H 0.03 0.85 7.93 -51.93 -0.41 0.44 16 25 H -0.01 -0.16 8.12 -51.93 -0.42 -0.58 16 26 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.08 1.48 7.48 -51.93 -0.39 1.09 16 28 H 0.04 0.69 7.98 -51.92 -0.41 0.27 16 29 H 0.14 1.18 8.05 -52.49 -0.42 0.76 16 30 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 31 H 0.16 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 278.58 15.07 4.20 4.20 Total: -1.00 -32.48 278.58 -6.29 -38.78 By element: Atomic # 1 Polarization: -2.90 SS G_CDS: -3.54 Total: -6.45 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -2.19 Total: -1.53 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: 0.26 Total: -52.02 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -32.48 -6.29 -38.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061659122.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.301 kcal (2) G-P(sol) polarization free energy of solvation -32.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds