Wall clock time and date at job start Mon Mar 30 2020 03:13:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46902 * 1
3 3 C 1.46905 * 110.99774 * 2 1
4 4 C 1.50689 * 109.47386 * 66.04186 * 3 2 1
5 5 H 1.08005 * 120.00256 * 0.02562 * 4 3 2
6 6 C 1.37876 * 120.00207 * 180.02562 * 4 3 2
7 7 N 1.31516 * 119.99964 * 359.97438 * 6 4 3
8 8 Si 1.86806 * 120.00476 * 180.02562 * 6 4 3
9 9 H 1.48503 * 109.47154 * 89.99521 * 8 6 4
10 10 H 1.48495 * 109.47102 * 210.00035 * 8 6 4
11 11 H 1.48499 * 109.46752 * 330.00035 * 8 6 4
12 12 C 1.46896 * 111.00210 * 236.04143 * 2 1 3
13 13 C 1.50698 * 109.47014 * 293.95391 * 12 2 1
14 14 C 1.38535 * 120.47096 * 104.99828 * 13 12 2
15 15 C 1.38659 * 118.50573 * 180.02562 * 14 13 12
16 16 C 1.38506 * 119.38052 * 359.97438 * 15 14 13
17 17 N 1.31560 * 120.91404 * 359.97438 * 16 15 14
18 18 C 1.32824 * 121.61841 * 0.02562 * 17 16 15
19 19 C 1.43205 * 119.73399 * 179.72447 * 18 17 16
20 20 N 3.63836 * 138.17532 * 145.12875 * 2 1 3
21 21 H 1.09000 * 109.46840 * 183.95617 * 1 2 3
22 22 H 1.08997 * 109.47419 * 303.95513 * 1 2 3
23 23 H 1.08999 * 109.46861 * 63.96009 * 1 2 3
24 24 H 1.08994 * 109.46789 * 186.04674 * 3 2 1
25 25 H 1.09005 * 109.46439 * 306.04114 * 3 2 1
26 26 H 0.96996 * 120.00329 * 180.02562 * 7 6 4
27 27 H 1.09003 * 109.47150 * 173.95041 * 12 2 1
28 28 H 1.09007 * 109.46751 * 53.95341 * 12 2 1
29 29 H 1.07995 * 120.74981 * 0.04245 * 14 13 12
30 30 H 1.07998 * 120.31181 * 179.97438 * 15 14 13
31 31 H 1.07999 * 119.54399 * 179.97438 * 16 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9954 1.3715 0.0000
4 6 1.6368 2.0472 1.2983
5 1 1.0745 1.5114 2.0487
6 6 2.0266 3.3496 1.5283
7 7 2.7118 4.0020 0.6148
8 14 1.5828 4.1871 3.1380
9 1 2.6602 3.9510 4.1324
10 1 1.4298 5.6466 2.9109
11 1 0.3055 3.6293 3.6504
12 6 1.9955 -0.7660 -1.1375
13 6 1.6370 -2.2204 -0.9726
14 6 0.6293 -2.7865 -1.7364
15 6 0.3328 -4.1283 -1.5509
16 6 1.0466 -4.8590 -0.6156
17 7 1.9998 -4.2976 0.0965
18 6 2.3153 -3.0157 -0.0501
19 6 3.3562 -2.4444 0.7505
20 7 4.1803 -1.9906 1.3872
21 1 -0.3633 -1.0252 0.0709
22 1 -0.3634 0.5740 0.8524
23 1 -0.3633 0.4511 -0.9234
24 1 3.0796 1.3444 -0.1083
25 1 1.5610 1.9273 -0.8310
26 1 2.9864 4.9181 0.7767
27 1 3.0798 -0.6611 -1.1755
28 1 1.5611 -0.3873 -2.0627
29 1 0.0872 -2.1962 -2.4602
30 1 -0.4475 -4.5992 -2.1304
31 1 0.8175 -5.9041 -0.4686
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000061659122.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:13:06
Heat of formation + Delta-G solvation = 50.200402 kcal
Electronic energy + Delta-G solvation = -15331.774666 eV
Core-core repulsion = 12805.694837 eV
Total energy + Delta-G solvation = -2526.079829 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 231.107 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-41.44988 -38.33891 -37.50150 -34.96092 -33.63134 -32.80797 -29.36415 -28.32096
-26.20615 -25.40406 -23.43109 -22.01189 -20.25388 -18.58401 -17.75258 -16.98064
-16.56393 -16.20245 -15.83682 -15.59673 -15.30838 -14.70436 -14.17530 -14.08062
-13.83964 -13.75781 -13.71866 -13.48987 -13.01880 -12.92332 -12.67457 -12.46617
-12.30488 -11.87214 -11.38667 -10.79710 -10.65645 -10.58348 -9.98906 -9.06890
-8.24646 -6.34194 -0.35632 0.26692 1.36181 1.38932 1.48991 1.62458
1.92952 2.36383 2.61043 2.91177 3.08296 3.35985 3.55963 3.87216
4.02296 4.09841 4.30616 4.46255 4.53398 4.64706 4.69671 4.77642
5.04002 5.13448 5.16803 5.21050 5.28130 5.59202 5.66634 5.99953
6.26615 6.42864 6.54653 6.80956 6.84239 7.35161 8.86415
Molecular weight = 231.11amu
Principal moments of inertia in cm(-1)
A = 0.036883 B = 0.006427 C = 0.006038
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 758.976585 B = 4355.636503 C = 4636.283150
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.043 3.957
2 N -0.549 5.549
3 C 0.213 3.787
4 C -0.523 4.523
5 H 0.059 0.941
6 C 0.003 3.997
7 N -0.933 5.933
8 Si 0.966 3.034
9 H -0.280 1.280
10 H -0.277 1.277
11 H -0.262 1.262
12 C 0.086 3.914
13 C -0.074 4.074
14 C -0.068 4.068
15 C -0.118 4.118
16 C 0.101 3.899
17 N -0.480 5.480
18 C 0.178 3.822
19 C 0.283 3.717
20 N -0.443 5.443
21 H 0.076 0.924
22 H 0.052 0.948
23 H 0.026 0.974
24 H -0.006 1.006
25 H -0.026 1.026
26 H 0.265 0.735
27 H 0.058 0.942
28 H 0.065 0.935
29 H 0.171 0.829
30 H 0.192 0.808
31 H 0.204 0.796
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.335 -17.278 -8.345 21.338
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.105 4.105
2 N -0.274 5.274
3 C 0.087 3.913
4 C -0.561 4.561
5 H 0.077 0.923
6 C -0.195 4.195
7 N -0.574 5.574
8 Si 0.790 3.210
9 H -0.206 1.206
10 H -0.202 1.202
11 H -0.186 1.186
12 C -0.043 4.043
13 C -0.079 4.079
14 C -0.094 4.094
15 C -0.138 4.138
16 C -0.060 4.060
17 N -0.191 5.191
18 C 0.042 3.958
19 C -0.033 4.033
20 N -0.121 5.121
21 H 0.095 0.905
22 H 0.071 0.929
23 H 0.045 0.955
24 H 0.012 0.988
25 H -0.008 1.008
26 H 0.074 0.926
27 H 0.077 0.923
28 H 0.083 0.917
29 H 0.188 0.812
30 H 0.209 0.791
31 H 0.221 0.779
Dipole moment (debyes) X Y Z Total
from point charges -7.356 -17.118 -6.348 19.683
hybrid contribution -0.516 1.752 -0.609 1.925
sum -7.872 -15.366 -6.956 18.614
Atomic orbital electron populations
1.22207 0.86717 1.01224 1.00380 1.62024 1.08992 1.15387 1.40972
1.19318 0.93166 0.83539 0.95315 1.21428 1.34919 0.97378 1.02411
0.92285 1.25876 0.95018 0.98085 1.00559 1.70069 1.39260 1.11949
1.36072 0.85435 0.78881 0.77574 0.79066 1.20593 1.20210 1.18610
1.21048 0.99786 0.89718 0.93707 1.20705 0.96461 0.95217 0.95537
1.21898 0.93717 0.96344 0.97443 1.22867 0.99986 0.93395 0.97554
1.23536 0.89429 1.02069 0.90923 1.67519 1.17175 1.09131 1.25257
1.16133 0.93952 0.90673 0.95060 1.25480 0.92697 0.92236 0.92908
1.81176 1.12430 1.09032 1.09427 0.90513 0.92900 0.95517 0.98837
1.00800 0.92638 0.92338 0.91711 0.81196 0.79056 0.77949
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 1.54 9.16 127.69 1.17 2.71 16
2 N -0.55 -23.52 4.63 -931.66 -4.31 -27.83 16
3 C 0.21 11.51 4.72 85.55 0.40 11.92 16
4 C -0.52 -30.56 8.46 25.60 0.22 -30.34 16
5 H 0.06 3.42 7.12 -2.91 -0.02 3.40 16
6 C 0.00 0.16 5.46 84.65 0.46 0.62 16
7 N -0.93 -57.42 13.29 21.45 0.28 -57.13 16
8 Si 0.97 45.84 29.54 68.60 2.03 47.87 16
9 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16
10 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16
11 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16
12 C 0.09 2.91 4.47 85.56 0.38 3.30 16
13 C -0.07 -1.96 4.46 -19.51 -0.09 -2.05 16
14 C -0.07 -1.10 9.28 22.44 0.21 -0.89 16
15 C -0.12 -1.22 10.11 22.43 0.23 -0.99 16
16 C 0.10 1.47 11.18 84.80 0.95 2.41 16
17 N -0.48 -12.27 10.28 -189.21 -1.94 -14.22 16
18 C 0.18 5.46 6.58 40.52 0.27 5.72 16
19 C 0.28 11.06 14.21 88.33 1.26 12.32 16
20 N -0.44 -19.80 18.54 19.00 0.35 -19.44 16
21 H 0.08 2.23 6.89 -2.39 -0.02 2.22 16
22 H 0.05 2.15 6.76 -2.39 -0.02 2.13 16
23 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16
24 H -0.01 -0.39 7.93 -2.39 -0.02 -0.41 16
25 H -0.03 -1.45 8.12 -2.38 -0.02 -1.47 16
26 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16
27 H 0.06 2.23 7.48 -2.39 -0.02 2.21 16
28 H 0.06 1.91 7.98 -2.38 -0.02 1.89 16
29 H 0.17 1.83 8.05 -2.91 -0.02 1.81 16
30 H 0.19 0.18 8.06 -2.91 -0.02 0.15 16
31 H 0.20 1.25 8.06 -2.91 -0.02 1.23 16
Total: -1.00 -76.03 278.58 2.99 -73.03
By element:
Atomic # 1 Polarization: -8.14 SS G_CDS: 1.13 Total: -7.01 kcal
Atomic # 6 Polarization: -0.72 SS G_CDS: 5.45 Total: 4.73 kcal
Atomic # 7 Polarization: -113.01 SS G_CDS: -5.62 Total: -118.63 kcal
Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal
Total: -76.03 2.99 -73.03 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000061659122.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 123.235 kcal
(2) G-P(sol) polarization free energy of solvation -76.026 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.210 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.991 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.035 kcal
(6) G-S(sol) free energy of system = (1) + (5) 50.200 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds