Wall clock time and date at job start Mon Mar 30 2020 03:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46905 * 110.99774 * 2 1 4 4 C 1.50689 * 109.47386 * 66.04186 * 3 2 1 5 5 H 1.08005 * 120.00256 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00207 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99964 * 359.97438 * 6 4 3 8 8 Si 1.86806 * 120.00476 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.47154 * 89.99521 * 8 6 4 10 10 H 1.48495 * 109.47102 * 210.00035 * 8 6 4 11 11 H 1.48499 * 109.46752 * 330.00035 * 8 6 4 12 12 C 1.46896 * 111.00210 * 236.04143 * 2 1 3 13 13 C 1.50698 * 109.47014 * 293.95391 * 12 2 1 14 14 C 1.38535 * 120.47096 * 104.99828 * 13 12 2 15 15 C 1.38659 * 118.50573 * 180.02562 * 14 13 12 16 16 C 1.38506 * 119.38052 * 359.97438 * 15 14 13 17 17 N 1.31560 * 120.91404 * 359.97438 * 16 15 14 18 18 C 1.32824 * 121.61841 * 0.02562 * 17 16 15 19 19 C 1.43205 * 119.73399 * 179.72447 * 18 17 16 20 20 N 3.63836 * 138.17532 * 145.12875 * 2 1 3 21 21 H 1.09000 * 109.46840 * 183.95617 * 1 2 3 22 22 H 1.08997 * 109.47419 * 303.95513 * 1 2 3 23 23 H 1.08999 * 109.46861 * 63.96009 * 1 2 3 24 24 H 1.08994 * 109.46789 * 186.04674 * 3 2 1 25 25 H 1.09005 * 109.46439 * 306.04114 * 3 2 1 26 26 H 0.96996 * 120.00329 * 180.02562 * 7 6 4 27 27 H 1.09003 * 109.47150 * 173.95041 * 12 2 1 28 28 H 1.09007 * 109.46751 * 53.95341 * 12 2 1 29 29 H 1.07995 * 120.74981 * 0.04245 * 14 13 12 30 30 H 1.07998 * 120.31181 * 179.97438 * 15 14 13 31 31 H 1.07999 * 119.54399 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 1.2983 5 1 1.0745 1.5114 2.0487 6 6 2.0266 3.3496 1.5283 7 7 2.7118 4.0020 0.6148 8 14 1.5828 4.1871 3.1380 9 1 2.6602 3.9510 4.1324 10 1 1.4298 5.6466 2.9109 11 1 0.3055 3.6293 3.6504 12 6 1.9955 -0.7660 -1.1375 13 6 1.6370 -2.2204 -0.9726 14 6 0.6293 -2.7865 -1.7364 15 6 0.3328 -4.1283 -1.5509 16 6 1.0466 -4.8590 -0.6156 17 7 1.9998 -4.2976 0.0965 18 6 2.3153 -3.0157 -0.0501 19 6 3.3562 -2.4444 0.7505 20 7 4.1803 -1.9906 1.3872 21 1 -0.3633 -1.0252 0.0709 22 1 -0.3634 0.5740 0.8524 23 1 -0.3633 0.4511 -0.9234 24 1 3.0796 1.3444 -0.1083 25 1 1.5610 1.9273 -0.8310 26 1 2.9864 4.9181 0.7767 27 1 3.0798 -0.6611 -1.1755 28 1 1.5611 -0.3873 -2.0627 29 1 0.0872 -2.1962 -2.4602 30 1 -0.4475 -4.5992 -2.1304 31 1 0.8175 -5.9041 -0.4686 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061659122.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:06 Heat of formation + Delta-G solvation = 50.200402 kcal Electronic energy + Delta-G solvation = -15331.774666 eV Core-core repulsion = 12805.694837 eV Total energy + Delta-G solvation = -2526.079829 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.44988 -38.33891 -37.50150 -34.96092 -33.63134 -32.80797 -29.36415 -28.32096 -26.20615 -25.40406 -23.43109 -22.01189 -20.25388 -18.58401 -17.75258 -16.98064 -16.56393 -16.20245 -15.83682 -15.59673 -15.30838 -14.70436 -14.17530 -14.08062 -13.83964 -13.75781 -13.71866 -13.48987 -13.01880 -12.92332 -12.67457 -12.46617 -12.30488 -11.87214 -11.38667 -10.79710 -10.65645 -10.58348 -9.98906 -9.06890 -8.24646 -6.34194 -0.35632 0.26692 1.36181 1.38932 1.48991 1.62458 1.92952 2.36383 2.61043 2.91177 3.08296 3.35985 3.55963 3.87216 4.02296 4.09841 4.30616 4.46255 4.53398 4.64706 4.69671 4.77642 5.04002 5.13448 5.16803 5.21050 5.28130 5.59202 5.66634 5.99953 6.26615 6.42864 6.54653 6.80956 6.84239 7.35161 8.86415 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.036883 B = 0.006427 C = 0.006038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.976585 B = 4355.636503 C = 4636.283150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.549 5.549 3 C 0.213 3.787 4 C -0.523 4.523 5 H 0.059 0.941 6 C 0.003 3.997 7 N -0.933 5.933 8 Si 0.966 3.034 9 H -0.280 1.280 10 H -0.277 1.277 11 H -0.262 1.262 12 C 0.086 3.914 13 C -0.074 4.074 14 C -0.068 4.068 15 C -0.118 4.118 16 C 0.101 3.899 17 N -0.480 5.480 18 C 0.178 3.822 19 C 0.283 3.717 20 N -0.443 5.443 21 H 0.076 0.924 22 H 0.052 0.948 23 H 0.026 0.974 24 H -0.006 1.006 25 H -0.026 1.026 26 H 0.265 0.735 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.171 0.829 30 H 0.192 0.808 31 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.335 -17.278 -8.345 21.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.274 5.274 3 C 0.087 3.913 4 C -0.561 4.561 5 H 0.077 0.923 6 C -0.195 4.195 7 N -0.574 5.574 8 Si 0.790 3.210 9 H -0.206 1.206 10 H -0.202 1.202 11 H -0.186 1.186 12 C -0.043 4.043 13 C -0.079 4.079 14 C -0.094 4.094 15 C -0.138 4.138 16 C -0.060 4.060 17 N -0.191 5.191 18 C 0.042 3.958 19 C -0.033 4.033 20 N -0.121 5.121 21 H 0.095 0.905 22 H 0.071 0.929 23 H 0.045 0.955 24 H 0.012 0.988 25 H -0.008 1.008 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.188 0.812 30 H 0.209 0.791 31 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -7.356 -17.118 -6.348 19.683 hybrid contribution -0.516 1.752 -0.609 1.925 sum -7.872 -15.366 -6.956 18.614 Atomic orbital electron populations 1.22207 0.86717 1.01224 1.00380 1.62024 1.08992 1.15387 1.40972 1.19318 0.93166 0.83539 0.95315 1.21428 1.34919 0.97378 1.02411 0.92285 1.25876 0.95018 0.98085 1.00559 1.70069 1.39260 1.11949 1.36072 0.85435 0.78881 0.77574 0.79066 1.20593 1.20210 1.18610 1.21048 0.99786 0.89718 0.93707 1.20705 0.96461 0.95217 0.95537 1.21898 0.93717 0.96344 0.97443 1.22867 0.99986 0.93395 0.97554 1.23536 0.89429 1.02069 0.90923 1.67519 1.17175 1.09131 1.25257 1.16133 0.93952 0.90673 0.95060 1.25480 0.92697 0.92236 0.92908 1.81176 1.12430 1.09032 1.09427 0.90513 0.92900 0.95517 0.98837 1.00800 0.92638 0.92338 0.91711 0.81196 0.79056 0.77949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.54 9.16 127.69 1.17 2.71 16 2 N -0.55 -23.52 4.63 -931.66 -4.31 -27.83 16 3 C 0.21 11.51 4.72 85.55 0.40 11.92 16 4 C -0.52 -30.56 8.46 25.60 0.22 -30.34 16 5 H 0.06 3.42 7.12 -2.91 -0.02 3.40 16 6 C 0.00 0.16 5.46 84.65 0.46 0.62 16 7 N -0.93 -57.42 13.29 21.45 0.28 -57.13 16 8 Si 0.97 45.84 29.54 68.60 2.03 47.87 16 9 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 12 C 0.09 2.91 4.47 85.56 0.38 3.30 16 13 C -0.07 -1.96 4.46 -19.51 -0.09 -2.05 16 14 C -0.07 -1.10 9.28 22.44 0.21 -0.89 16 15 C -0.12 -1.22 10.11 22.43 0.23 -0.99 16 16 C 0.10 1.47 11.18 84.80 0.95 2.41 16 17 N -0.48 -12.27 10.28 -189.21 -1.94 -14.22 16 18 C 0.18 5.46 6.58 40.52 0.27 5.72 16 19 C 0.28 11.06 14.21 88.33 1.26 12.32 16 20 N -0.44 -19.80 18.54 19.00 0.35 -19.44 16 21 H 0.08 2.23 6.89 -2.39 -0.02 2.22 16 22 H 0.05 2.15 6.76 -2.39 -0.02 2.13 16 23 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 24 H -0.01 -0.39 7.93 -2.39 -0.02 -0.41 16 25 H -0.03 -1.45 8.12 -2.38 -0.02 -1.47 16 26 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 27 H 0.06 2.23 7.48 -2.39 -0.02 2.21 16 28 H 0.06 1.91 7.98 -2.38 -0.02 1.89 16 29 H 0.17 1.83 8.05 -2.91 -0.02 1.81 16 30 H 0.19 0.18 8.06 -2.91 -0.02 0.15 16 31 H 0.20 1.25 8.06 -2.91 -0.02 1.23 16 Total: -1.00 -76.03 278.58 2.99 -73.03 By element: Atomic # 1 Polarization: -8.14 SS G_CDS: 1.13 Total: -7.01 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: 5.45 Total: 4.73 kcal Atomic # 7 Polarization: -113.01 SS G_CDS: -5.62 Total: -118.63 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -76.03 2.99 -73.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061659122.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.235 kcal (2) G-P(sol) polarization free energy of solvation -76.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds