Wall clock time and date at job start Mon Mar 30 2020 03:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31164 * 1 3 3 Si 1.86794 * 120.00232 * 2 1 4 4 H 1.48501 * 109.47495 * 270.00441 * 3 2 1 5 5 H 1.48501 * 109.46931 * 30.00114 * 3 2 1 6 6 H 1.48490 * 109.47401 * 149.99985 * 3 2 1 7 7 C 1.39220 * 119.99757 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99523 * 179.97438 * 7 2 1 9 9 N 1.36733 * 120.00158 * 0.27917 * 7 2 1 10 10 N 1.28383 * 124.41209 * 359.41683 * 9 7 2 11 11 C 1.31864 * 111.95184 * 179.88026 * 10 9 7 12 12 C 1.47195 * 126.79072 * 180.16383 * 11 10 9 13 13 O 1.21549 * 120.00246 * 180.25740 * 12 11 10 14 14 O 1.34826 * 119.99642 * 0.25224 * 12 11 10 15 15 C 1.47046 * 106.42451 * 0.37398 * 11 10 9 16 16 C 1.39102 * 135.40494 * 179.75868 * 15 11 10 17 17 C 1.37827 * 119.53207 * 180.02562 * 16 15 11 18 18 C 1.38819 * 120.35447 * 359.97438 * 17 16 15 19 19 C 1.37863 * 120.71988 * 0.02562 * 18 17 16 20 20 C 1.37725 * 124.41433 * 179.72842 * 9 7 2 21 21 H 0.96996 * 120.00186 * 359.97438 * 1 2 3 22 22 H 0.96705 * 117.00174 * 179.97438 * 14 12 11 23 23 H 1.08000 * 120.23771 * 0.02562 * 16 15 11 24 24 H 1.08006 * 119.82592 * 179.97438 * 17 16 15 25 25 H 1.07995 * 119.63714 * 180.02562 * 18 17 16 26 26 H 1.08003 * 120.08545 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3116 0.0000 0.0000 3 14 2.2457 1.6176 0.0000 4 1 2.4931 2.0465 -1.4001 5 1 1.4431 2.6526 0.7001 6 1 3.5431 1.4401 0.7000 7 6 2.0077 -1.2057 -0.0005 8 1 3.0877 -1.2057 -0.0010 9 7 1.3240 -2.3898 -0.0068 10 7 0.0440 -2.4886 -0.0017 11 6 -0.3534 -3.7459 -0.0125 12 6 -1.7431 -4.2312 -0.0141 13 8 -1.9698 -5.4253 -0.0199 14 8 -2.7644 -3.3511 -0.0091 15 6 0.8662 -4.5674 -0.0174 16 6 1.1420 -5.9308 -0.0239 17 6 2.4522 -6.3588 -0.0265 18 6 3.4910 -5.4380 -0.0231 19 6 3.2319 -4.0840 -0.0167 20 6 1.9188 -3.6320 -0.0133 21 1 -0.4850 0.8400 0.0004 22 1 -3.6595 -3.7172 -0.0108 23 1 0.3354 -6.6489 -0.0269 24 1 2.6718 -7.4163 -0.0311 25 1 4.5133 -5.7862 -0.0256 26 1 4.0480 -3.3766 -0.0146 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062810351.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:02 Heat of formation + Delta-G solvation = -21.289047 kcal Electronic energy + Delta-G solvation = -15551.729005 eV Core-core repulsion = 12788.997405 eV Total energy + Delta-G solvation = -2762.731601 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 232.063 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.97463 -40.64844 -38.39231 -36.87333 -35.55625 -33.27189 -30.88062 -30.68090 -27.91975 -25.24822 -23.74961 -22.83125 -21.66794 -19.60489 -19.12764 -18.22360 -17.25932 -16.91391 -16.83896 -15.94525 -15.89334 -15.86064 -14.83398 -14.60841 -14.12120 -13.66440 -13.16752 -13.07894 -12.69500 -12.65746 -12.49915 -12.13325 -11.92977 -11.55359 -11.37327 -11.08746 -10.70686 -9.42208 -9.11362 -8.61731 -6.45342 0.08721 0.57945 1.06619 1.39786 1.53725 1.59533 1.99210 2.24573 2.34359 2.72626 2.91230 3.10908 3.85945 3.93007 4.27842 4.30997 4.60523 4.67920 4.90608 4.93642 5.16693 5.25318 5.52763 5.60330 5.67545 5.70448 5.86981 6.19439 6.44046 6.99884 7.19692 7.76000 8.34301 Molecular weight = 232.06amu Principal moments of inertia in cm(-1) A = 0.022437 B = 0.010988 C = 0.007395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.635516 B = 2547.598415 C = 3785.386476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C -0.001 4.001 3 Si 1.024 2.976 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.243 1.243 7 C -0.354 4.354 8 H 0.149 0.851 9 N -0.096 5.096 10 N -0.193 5.193 11 C -0.181 4.181 12 C 0.582 3.418 13 O -0.560 6.560 14 O -0.505 6.505 15 C -0.112 4.112 16 C -0.100 4.100 17 C -0.123 4.123 18 C -0.119 4.119 19 C -0.092 4.092 20 C -0.040 4.040 21 H 0.286 0.714 22 H 0.423 0.577 23 H 0.121 0.879 24 H 0.160 0.840 25 H 0.168 0.832 26 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.788 -2.806 -0.006 6.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.216 4.216 3 Si 0.842 3.158 4 H -0.186 1.186 5 H -0.197 1.197 6 H -0.165 1.165 7 C -0.488 4.488 8 H 0.167 0.833 9 N 0.121 4.879 10 N -0.039 5.039 11 C -0.325 4.325 12 C 0.431 3.569 13 O -0.453 6.453 14 O -0.317 6.317 15 C -0.120 4.120 16 C -0.120 4.120 17 C -0.142 4.142 18 C -0.139 4.139 19 C -0.113 4.113 20 C -0.149 4.149 21 H 0.097 0.903 22 H 0.283 0.717 23 H 0.139 0.861 24 H 0.177 0.823 25 H 0.185 0.815 26 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 5.427 -1.857 0.007 5.736 hybrid contribution -0.743 -0.158 -0.022 0.760 sum 4.684 -2.016 -0.015 5.100 Atomic orbital electron populations 1.70297 1.08479 1.30285 1.33973 1.26983 0.96560 1.04349 0.93693 0.84509 0.78400 0.73356 0.79570 1.18576 1.19686 1.16543 1.20934 0.93845 0.80251 1.53778 0.83333 1.42026 1.01652 1.05351 1.38919 1.73939 0.95439 1.18753 1.15738 1.21382 0.91180 0.90491 1.29433 1.18986 0.83905 0.82721 0.71335 1.90737 1.85637 1.17361 1.51527 1.84741 1.19181 1.42081 1.85658 1.19599 0.90572 0.95049 1.06786 1.20574 0.98205 0.91870 1.01347 1.21350 0.90817 1.01168 1.00890 1.21235 1.00741 0.90669 1.01219 1.20383 0.91647 0.97360 1.01916 1.19911 0.96633 0.85488 1.12907 0.90335 0.71692 0.86109 0.82262 0.81486 0.84206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -43.10 11.74 21.70 0.25 -42.84 15 2 C 0.00 -0.06 5.50 85.03 0.47 0.41 15 3 Si 1.02 35.45 29.55 68.60 2.03 37.48 15 4 H -0.26 -8.72 7.11 99.48 0.71 -8.01 15 5 H -0.27 -9.29 7.11 99.48 0.71 -8.58 15 6 H -0.24 -7.61 7.11 99.48 0.71 -6.90 15 7 C -0.35 -17.79 10.07 84.17 0.85 -16.95 15 8 H 0.15 6.43 7.72 -2.91 -0.02 6.41 15 9 N -0.10 -5.22 3.45 -184.03 -0.63 -5.86 15 10 N -0.19 -11.25 9.55 -44.77 -0.43 -11.68 15 11 C -0.18 -9.89 7.36 43.81 0.32 -9.57 15 12 C 0.58 28.58 8.33 70.18 0.58 29.17 15 13 O -0.56 -27.25 17.16 19.68 0.34 -26.91 15 14 O -0.50 -21.35 13.44 -57.38 -0.77 -22.12 15 15 C -0.11 -5.60 6.33 -20.13 -0.13 -5.72 15 16 C -0.10 -4.12 9.90 22.38 0.22 -3.90 15 17 C -0.12 -3.90 10.03 22.31 0.22 -3.68 15 18 C -0.12 -3.58 10.01 22.32 0.22 -3.35 15 19 C -0.09 -3.47 9.95 22.33 0.22 -3.24 15 20 C -0.04 -1.96 6.79 39.00 0.26 -1.70 15 21 H 0.29 13.95 8.30 -92.71 -0.77 13.18 15 22 H 0.42 11.85 9.11 -74.05 -0.67 11.18 15 23 H 0.12 4.87 7.62 -2.91 -0.02 4.85 15 24 H 0.16 3.63 8.06 -2.91 -0.02 3.60 15 25 H 0.17 3.40 8.06 -2.91 -0.02 3.37 15 26 H 0.14 4.50 7.96 -2.91 -0.02 4.47 15 Total: -1.00 -71.49 247.32 4.60 -66.89 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: 0.56 Total: 23.59 kcal Atomic # 6 Polarization: -21.79 SS G_CDS: 3.25 Total: -18.54 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: -0.81 Total: -60.38 kcal Atomic # 8 Polarization: -48.60 SS G_CDS: -0.43 Total: -49.03 kcal Atomic # 14 Polarization: 35.45 SS G_CDS: 2.03 Total: 37.48 kcal Total: -71.49 4.60 -66.89 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062810351.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.603 kcal (2) G-P(sol) polarization free energy of solvation -71.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds