Wall clock time and date at job start Mon Mar 30 2020 03:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31384 * 1 3 3 Si 1.86797 * 120.00290 * 2 1 4 4 H 1.48502 * 109.47338 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47407 * 120.00064 * 3 2 1 6 6 H 1.48502 * 109.47353 * 240.00039 * 3 2 1 7 7 C 1.38877 * 119.99744 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00121 * 203.53800 * 7 2 1 9 9 N 1.37576 * 119.99970 * 23.54551 * 7 2 1 10 10 C 1.36745 * 126.54197 * 32.51083 * 9 7 2 11 11 O 1.35461 * 125.81443 * 359.97438 * 10 9 7 12 12 N 1.30976 * 108.37021 * 179.86384 * 10 9 7 13 13 C 1.34517 * 109.38715 * 0.41557 * 12 10 9 14 14 C 1.34542 * 108.40463 * 359.73925 * 13 12 10 15 15 Br 1.89094 * 126.54009 * 180.02562 * 14 13 12 16 16 H 0.97001 * 120.00514 * 185.76625 * 1 2 3 17 17 H 0.96705 * 114.00378 * 89.99566 * 11 10 9 18 18 H 1.08002 * 125.79456 * 179.76689 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2479 1.6177 0.0000 4 1 1.2830 2.7465 -0.0006 5 1 3.1017 1.6963 1.2125 6 1 3.1017 1.6963 -1.2125 7 6 2.0082 -1.2027 0.0005 8 1 3.0207 -1.2415 0.3741 9 7 1.4061 -2.3448 -0.4749 10 6 0.4852 -2.4205 -1.4829 11 8 0.0011 -1.3744 -2.1945 12 7 0.1528 -3.6770 -1.6448 13 6 0.8261 -4.4345 -0.7604 14 6 1.6114 -3.6291 -0.0223 15 35 2.7755 -4.1596 1.3703 16 1 -0.4851 -0.8358 0.0844 17 1 0.5123 -1.1690 -2.9892 18 1 0.7496 -5.5071 -0.6601 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108313720.mol2 18 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:31 Heat of formation + Delta-G solvation = 16.083591 kcal Electronic energy + Delta-G solvation = -9663.156983 eV Core-core repulsion = 7549.352352 eV Total energy + Delta-G solvation = -2113.804632 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 231.959 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.76771 -36.05614 -34.25533 -31.20528 -30.39080 -26.68448 -25.02432 -20.63888 -20.23059 -19.01879 -16.44535 -15.66084 -14.66029 -13.97643 -13.50244 -13.10121 -12.62116 -12.18027 -11.22326 -10.74274 -10.52509 -10.44946 -10.16648 -9.75932 -9.52484 -8.89834 -8.60019 -7.29388 -7.16356 -4.69004 2.33910 2.83456 3.10811 3.22740 3.31773 3.82378 3.88676 4.33308 4.73509 5.31450 6.22674 6.49468 6.85969 7.41818 7.55378 7.81733 8.24790 8.56550 9.06434 9.15134 10.09636 Molecular weight = 231.96amu Principal moments of inertia in cm(-1) A = 0.033974 B = 0.014533 C = 0.010661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.963752 B = 1926.237347 C = 2625.846139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.031 3.969 3 Si 1.085 2.915 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.443 4.443 8 H 0.108 0.892 9 N -0.244 5.244 10 C 0.299 3.701 11 O -0.425 6.425 12 N -0.505 5.505 13 C -0.008 4.008 14 C -0.081 4.081 15 Br -0.024 7.024 16 H 0.291 0.709 17 H 0.373 0.627 18 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.885 -3.212 1.496 6.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.188 4.188 3 Si 0.908 3.092 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.572 4.572 8 H 0.126 0.874 9 N 0.079 4.921 10 C 0.004 3.996 11 O -0.221 6.221 12 N -0.236 5.236 13 C -0.167 4.167 14 C -0.280 4.280 15 Br 0.058 6.942 16 H 0.104 0.896 17 H 0.226 0.774 18 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 5.034 -1.730 1.741 5.600 hybrid contribution 0.866 -1.242 0.053 1.515 sum 5.899 -2.972 1.794 6.845 Atomic orbital electron populations 1.70531 1.07220 1.33212 1.30741 1.26866 0.95935 1.02972 0.93067 0.83284 0.75008 0.73178 0.77724 1.19649 1.20235 1.20213 1.20872 1.01285 0.85782 1.49273 0.87427 1.42190 1.24644 1.05149 1.20105 1.19957 0.99231 0.86598 0.93844 1.85027 1.51637 1.45967 1.39513 1.70284 1.27523 0.99860 1.25888 1.21490 0.98673 0.98424 0.98108 1.22357 1.11182 0.88667 1.05800 1.96398 1.62434 1.88874 1.46448 0.89617 0.77425 0.82208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.77 12.10 55.49 0.67 -21.09 13 2 C 0.03 0.78 4.79 -17.51 -0.08 0.70 13 3 Si 1.09 21.53 29.98 -169.99 -5.10 16.44 13 4 H -0.27 -5.43 7.11 56.52 0.40 -5.02 13 5 H -0.28 -5.21 7.11 56.52 0.40 -4.80 13 6 H -0.28 -5.21 7.11 56.52 0.40 -4.80 13 7 C -0.44 -11.52 9.65 -14.74 -0.14 -11.66 13 8 H 0.11 2.73 7.93 -52.49 -0.42 2.31 13 9 N -0.24 -6.39 2.70 -61.49 -0.17 -6.56 13 10 C 0.30 7.79 7.67 -88.40 -0.68 7.11 13 11 O -0.42 -10.35 11.24 -18.08 -0.20 -10.55 13 12 N -0.51 -12.86 11.28 -14.47 -0.16 -13.03 13 13 C -0.01 -0.19 11.82 -17.68 -0.21 -0.40 13 14 C -0.08 -1.95 7.34 -16.22 -0.12 -2.07 13 15 Br -0.02 -0.46 33.81 -68.01 -2.30 -2.76 13 16 H 0.29 8.57 6.91 -40.82 -0.28 8.29 13 17 H 0.37 7.23 9.06 45.56 0.41 7.65 13 18 H 0.16 3.12 8.06 -52.49 -0.42 2.70 13 LS Contribution 195.65 15.07 2.95 2.95 Total: -1.00 -29.57 195.65 -5.04 -34.61 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: 0.50 Total: 6.31 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: -1.23 Total: -6.31 kcal Atomic # 7 Polarization: -41.02 SS G_CDS: 0.34 Total: -40.68 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: -0.20 Total: -10.55 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.10 Total: 16.44 kcal Atomic # 35 Polarization: -0.46 SS G_CDS: -2.30 Total: -2.76 kcal Total LS contribution 2.95 Total: 2.95 kcal Total: -29.57 -5.04 -34.61 kcal The number of atoms in the molecule is 18 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108313720.mol2 18 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.693 kcal (2) G-P(sol) polarization free energy of solvation -29.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds