Wall clock time and date at job start Mon Mar 30 2020 03:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.46873 * 2 1 4 4 C 1.46494 * 120.00202 * 269.99905 * 3 2 1 5 5 C 1.50702 * 109.47471 * 270.00511 * 4 3 2 6 6 H 1.07995 * 119.99875 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00088 * 180.02562 * 5 4 3 8 8 N 1.31521 * 119.99996 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00093 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47034 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46591 * 119.99981 * 9 7 5 12 12 H 1.48493 * 109.47275 * 240.00097 * 9 7 5 13 13 C 1.39235 * 119.99379 * 90.00480 * 3 2 1 14 14 C 1.39455 * 120.39046 * 359.97438 * 13 3 2 15 15 C 1.38195 * 118.45057 * 180.02562 * 14 13 3 16 16 C 1.39630 * 119.14286 * 359.97438 * 15 14 13 17 17 C 1.43195 * 119.65070 * 180.02562 * 16 15 14 18 18 N 7.55846 * 102.66988 * 50.50003 * 2 1 3 19 19 N 1.32868 * 120.69526 * 359.97438 * 16 15 14 20 20 C 1.31424 * 121.69590 * 0.02562 * 19 16 15 21 21 H 1.08996 * 109.47065 * 299.99664 * 1 2 3 22 22 H 1.08996 * 109.47647 * 59.99467 * 1 2 3 23 23 H 1.09005 * 109.47288 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.46953 * 240.00886 * 2 1 3 25 25 H 1.08996 * 109.47647 * 120.00533 * 2 1 3 26 26 H 1.09000 * 109.47222 * 30.00701 * 4 3 2 27 27 H 1.09000 * 109.46686 * 150.00215 * 4 3 2 28 28 H 0.96993 * 119.99681 * 179.97438 * 8 7 5 29 29 H 1.08001 * 120.77429 * 0.03449 * 14 13 3 30 30 H 1.08000 * 120.42816 * 179.97438 * 15 14 13 31 31 H 1.08001 * 119.60170 * 180.02562 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2686 5 6 3.6857 1.8351 -1.7038 6 1 4.3428 1.2310 -1.0959 7 6 4.1492 2.3907 -2.8775 8 7 3.3492 3.1268 -3.6175 9 14 5.9136 2.0978 -3.4165 10 1 6.6010 1.2415 -2.4167 11 1 5.9214 1.4193 -4.7375 12 1 6.6209 3.3990 -3.5241 13 6 2.2503 2.0375 1.2059 14 6 2.0202 1.3879 2.4183 15 6 2.2635 2.0772 3.5911 16 6 2.7288 3.3919 3.5231 17 6 2.9850 4.1161 4.7316 18 7 3.1878 4.6907 5.6903 19 7 2.9374 3.9777 2.3489 20 6 2.7162 3.3505 1.2153 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5137 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 1.5816 1.6879 -2.0283 27 1 2.0954 3.1411 -1.1382 28 1 3.6754 3.5179 -4.4430 29 1 1.6605 0.3698 2.4401 30 1 2.0958 1.6051 4.5478 31 1 2.8977 3.8591 0.2800 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129148681.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:08 Heat of formation + Delta-G solvation = 51.444757 kcal Electronic energy + Delta-G solvation = -15265.366405 eV Core-core repulsion = 12739.340536 eV Total energy + Delta-G solvation = -2526.025870 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.29371 -38.45614 -37.21139 -34.94603 -33.17642 -32.58844 -30.99719 -28.46159 -25.52182 -25.30286 -23.62562 -22.05063 -20.12930 -18.62633 -18.00704 -17.61677 -16.43226 -15.92581 -15.66963 -15.35007 -14.82840 -14.81881 -14.63505 -14.00934 -13.90221 -13.62172 -13.50556 -13.36093 -13.13163 -12.88518 -12.65216 -12.47246 -12.14560 -11.81816 -11.67411 -11.10401 -10.64118 -10.46244 -10.42390 -8.43928 -8.01142 -6.34514 -0.00883 0.43698 1.39694 1.43982 1.53065 1.58988 1.96432 2.27669 2.45252 2.82716 3.09980 3.11391 3.85834 3.95714 4.16745 4.22571 4.27425 4.47661 4.68908 4.78389 4.86193 5.03497 5.06393 5.14044 5.21501 5.28331 5.46040 5.60231 5.69378 6.05766 6.29847 6.45063 6.61157 6.81453 7.04884 7.37263 8.85035 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.022879 B = 0.007541 C = 0.006147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.520146 B = 3712.254013 C = 4554.111099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.107 3.893 3 N -0.590 5.590 4 C 0.257 3.743 5 C -0.541 4.541 6 H 0.056 0.944 7 C 0.018 3.982 8 N -0.923 5.923 9 Si 0.954 3.046 10 H -0.269 1.269 11 H -0.277 1.277 12 H -0.284 1.284 13 C 0.210 3.790 14 C -0.171 4.171 15 C -0.042 4.042 16 C 0.062 3.938 17 C 0.305 3.695 18 N -0.460 5.460 19 N -0.436 5.436 20 C 0.021 3.979 21 H 0.061 0.939 22 H 0.038 0.962 23 H 0.089 0.911 24 H 0.070 0.930 25 H 0.098 0.902 26 H 0.022 0.978 27 H 0.020 0.980 28 H 0.267 0.733 29 H 0.175 0.825 30 H 0.177 0.823 31 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.185 -8.861 8.142 13.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.015 4.015 3 N -0.292 5.292 4 C 0.136 3.864 5 C -0.580 4.580 6 H 0.074 0.926 7 C -0.182 4.182 8 N -0.563 5.563 9 Si 0.780 3.220 10 H -0.193 1.193 11 H -0.203 1.203 12 H -0.210 1.210 13 C 0.096 3.904 14 C -0.200 4.200 15 C -0.064 4.064 16 C -0.076 4.076 17 C -0.010 4.010 18 N -0.138 5.138 19 N -0.145 5.145 20 C -0.148 4.148 21 H 0.080 0.920 22 H 0.057 0.943 23 H 0.108 0.892 24 H 0.088 0.912 25 H 0.116 0.884 26 H 0.040 0.960 27 H 0.038 0.962 28 H 0.076 0.924 29 H 0.192 0.808 30 H 0.195 0.805 31 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.633 -7.163 9.208 12.553 hybrid contribution 0.664 -0.553 -1.374 1.624 sum -3.968 -7.717 7.834 11.690 Atomic orbital electron populations 1.22143 0.94859 1.03170 1.01778 1.21689 0.94928 0.81262 1.03639 1.47254 1.64807 1.13789 1.03317 1.18992 0.95052 0.92259 0.80115 1.21777 0.97819 1.31876 1.06497 0.92594 1.25657 1.01319 0.94666 0.96521 1.70016 1.37289 1.34103 1.14857 0.85557 0.80293 0.77901 0.78229 1.19311 1.20298 1.20953 1.19355 0.90581 0.92355 0.88085 1.21304 1.07461 1.02397 0.88853 1.21928 0.92731 0.91176 1.00602 1.16198 1.12313 0.93046 0.86074 1.25182 0.91907 0.91975 0.91943 1.81177 1.11222 1.08668 1.12765 1.67178 1.11609 1.37934 0.97808 1.22241 1.04728 0.92635 0.95163 0.91983 0.94285 0.89230 0.91195 0.88408 0.95970 0.96203 0.92443 0.80820 0.80539 0.83744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.43 10.24 71.98 0.74 -2.69 16 2 C 0.11 2.76 5.89 86.38 0.51 3.27 16 3 N -0.59 -20.42 2.58 -701.11 -1.81 -22.23 16 4 C 0.26 11.54 4.91 85.63 0.42 11.96 16 5 C -0.54 -27.11 9.39 25.60 0.24 -26.87 16 6 H 0.06 2.82 7.81 -2.91 -0.02 2.80 16 7 C 0.02 0.95 5.46 84.65 0.46 1.41 16 8 N -0.92 -50.72 13.29 21.45 0.28 -50.44 16 9 Si 0.95 41.60 29.54 68.60 2.03 43.63 16 10 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 11 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 12 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 13 C 0.21 6.85 6.57 38.52 0.25 7.10 16 14 C -0.17 -4.01 9.28 22.55 0.21 -3.80 16 15 C -0.04 -0.93 9.78 22.60 0.22 -0.71 16 16 C 0.06 1.89 6.59 40.57 0.27 2.15 16 17 C 0.31 9.50 15.53 88.33 1.37 10.88 16 18 N -0.46 -15.45 18.54 19.00 0.35 -15.10 16 19 N -0.44 -15.94 10.26 -188.46 -1.93 -17.87 16 20 C 0.02 0.78 10.37 85.02 0.88 1.67 16 21 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 22 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 23 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 24 H 0.07 1.99 8.07 -2.38 -0.02 1.97 16 25 H 0.10 1.92 6.23 -2.39 -0.01 1.90 16 26 H 0.02 1.06 8.07 -2.39 -0.02 1.04 16 27 H 0.02 0.98 6.21 -2.39 -0.01 0.96 16 28 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 29 H 0.17 2.82 6.25 -2.91 -0.02 2.80 16 30 H 0.18 2.46 8.06 -2.91 -0.02 2.43 16 31 H 0.15 6.19 6.14 -2.91 -0.02 6.17 16 Total: -1.00 -59.96 279.12 5.64 -54.32 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: 1.14 Total: 3.30 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: 5.57 Total: 4.38 kcal Atomic # 7 Polarization: -102.53 SS G_CDS: -3.10 Total: -105.63 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -59.96 5.64 -54.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129148681.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.767 kcal (2) G-P(sol) polarization free energy of solvation -59.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds