Wall clock time and date at job start Mon Mar 30 2020 03:08:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 N 1.46505 * 109.46873 * 2 1
4 4 C 1.46494 * 120.00202 * 269.99905 * 3 2 1
5 5 C 1.50702 * 109.47471 * 270.00511 * 4 3 2
6 6 H 1.07995 * 119.99875 * 359.97438 * 5 4 3
7 7 C 1.37877 * 120.00088 * 180.02562 * 5 4 3
8 8 N 1.31521 * 119.99996 * 359.97438 * 7 5 4
9 9 Si 1.86799 * 120.00093 * 179.97438 * 7 5 4
10 10 H 1.48503 * 109.47034 * 0.02562 * 9 7 5
11 11 H 1.48505 * 109.46591 * 119.99981 * 9 7 5
12 12 H 1.48493 * 109.47275 * 240.00097 * 9 7 5
13 13 C 1.39235 * 119.99379 * 90.00480 * 3 2 1
14 14 C 1.39455 * 120.39046 * 359.97438 * 13 3 2
15 15 C 1.38195 * 118.45057 * 180.02562 * 14 13 3
16 16 C 1.39630 * 119.14286 * 359.97438 * 15 14 13
17 17 C 1.43195 * 119.65070 * 180.02562 * 16 15 14
18 18 N 7.55846 * 102.66988 * 50.50003 * 2 1 3
19 19 N 1.32868 * 120.69526 * 359.97438 * 16 15 14
20 20 C 1.31424 * 121.69590 * 0.02562 * 19 16 15
21 21 H 1.08996 * 109.47065 * 299.99664 * 1 2 3
22 22 H 1.08996 * 109.47647 * 59.99467 * 1 2 3
23 23 H 1.09005 * 109.47288 * 179.97438 * 1 2 3
24 24 H 1.09006 * 109.46953 * 240.00886 * 2 1 3
25 25 H 1.08996 * 109.47647 * 120.00533 * 2 1 3
26 26 H 1.09000 * 109.47222 * 30.00701 * 4 3 2
27 27 H 1.09000 * 109.46686 * 150.00215 * 4 3 2
28 28 H 0.96993 * 119.99681 * 179.97438 * 8 7 5
29 29 H 1.08001 * 120.77429 * 0.03449 * 14 13 3
30 30 H 1.08000 * 120.42816 * 179.97438 * 15 14 13
31 31 H 1.08001 * 119.60170 * 180.02562 * 20 19 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3813 0.0000
4 6 2.2624 2.0719 -1.2686
5 6 3.6857 1.8351 -1.7038
6 1 4.3428 1.2310 -1.0959
7 6 4.1492 2.3907 -2.8775
8 7 3.3492 3.1268 -3.6175
9 14 5.9136 2.0978 -3.4165
10 1 6.6010 1.2415 -2.4167
11 1 5.9214 1.4193 -4.7375
12 1 6.6209 3.3990 -3.5241
13 6 2.2503 2.0375 1.2059
14 6 2.0202 1.3879 2.4183
15 6 2.2635 2.0772 3.5911
16 6 2.7288 3.3919 3.5231
17 6 2.9850 4.1161 4.7316
18 7 3.1878 4.6907 5.6903
19 7 2.9374 3.9777 2.3489
20 6 2.7162 3.3505 1.2153
21 1 -0.3633 0.5138 0.8900
22 1 -0.3634 0.5139 -0.8899
23 1 -0.3634 -1.0277 -0.0005
24 1 1.8933 -0.5137 -0.8901
25 1 1.8934 -0.5139 0.8899
26 1 1.5816 1.6879 -2.0283
27 1 2.0954 3.1411 -1.1382
28 1 3.6754 3.5179 -4.4430
29 1 1.6605 0.3698 2.4401
30 1 2.0958 1.6051 4.5478
31 1 2.8977 3.8591 0.2800
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000129148681.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:08:08
Heat of formation + Delta-G solvation = 51.444757 kcal
Electronic energy + Delta-G solvation = -15265.366405 eV
Core-core repulsion = 12739.340536 eV
Total energy + Delta-G solvation = -2526.025870 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 231.107 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-41.29371 -38.45614 -37.21139 -34.94603 -33.17642 -32.58844 -30.99719 -28.46159
-25.52182 -25.30286 -23.62562 -22.05063 -20.12930 -18.62633 -18.00704 -17.61677
-16.43226 -15.92581 -15.66963 -15.35007 -14.82840 -14.81881 -14.63505 -14.00934
-13.90221 -13.62172 -13.50556 -13.36093 -13.13163 -12.88518 -12.65216 -12.47246
-12.14560 -11.81816 -11.67411 -11.10401 -10.64118 -10.46244 -10.42390 -8.43928
-8.01142 -6.34514 -0.00883 0.43698 1.39694 1.43982 1.53065 1.58988
1.96432 2.27669 2.45252 2.82716 3.09980 3.11391 3.85834 3.95714
4.16745 4.22571 4.27425 4.47661 4.68908 4.78389 4.86193 5.03497
5.06393 5.14044 5.21501 5.28331 5.46040 5.60231 5.69378 6.05766
6.29847 6.45063 6.61157 6.81453 7.04884 7.37263 8.85035
Molecular weight = 231.11amu
Principal moments of inertia in cm(-1)
A = 0.022879 B = 0.007541 C = 0.006147
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1223.520146 B = 3712.254013 C = 4554.111099
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.161 4.161
2 C 0.107 3.893
3 N -0.590 5.590
4 C 0.257 3.743
5 C -0.541 4.541
6 H 0.056 0.944
7 C 0.018 3.982
8 N -0.923 5.923
9 Si 0.954 3.046
10 H -0.269 1.269
11 H -0.277 1.277
12 H -0.284 1.284
13 C 0.210 3.790
14 C -0.171 4.171
15 C -0.042 4.042
16 C 0.062 3.938
17 C 0.305 3.695
18 N -0.460 5.460
19 N -0.436 5.436
20 C 0.021 3.979
21 H 0.061 0.939
22 H 0.038 0.962
23 H 0.089 0.911
24 H 0.070 0.930
25 H 0.098 0.902
26 H 0.022 0.978
27 H 0.020 0.980
28 H 0.267 0.733
29 H 0.175 0.825
30 H 0.177 0.823
31 H 0.145 0.855
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.185 -8.861 8.142 13.103
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.219 4.219
2 C -0.015 4.015
3 N -0.292 5.292
4 C 0.136 3.864
5 C -0.580 4.580
6 H 0.074 0.926
7 C -0.182 4.182
8 N -0.563 5.563
9 Si 0.780 3.220
10 H -0.193 1.193
11 H -0.203 1.203
12 H -0.210 1.210
13 C 0.096 3.904
14 C -0.200 4.200
15 C -0.064 4.064
16 C -0.076 4.076
17 C -0.010 4.010
18 N -0.138 5.138
19 N -0.145 5.145
20 C -0.148 4.148
21 H 0.080 0.920
22 H 0.057 0.943
23 H 0.108 0.892
24 H 0.088 0.912
25 H 0.116 0.884
26 H 0.040 0.960
27 H 0.038 0.962
28 H 0.076 0.924
29 H 0.192 0.808
30 H 0.195 0.805
31 H 0.163 0.837
Dipole moment (debyes) X Y Z Total
from point charges -4.633 -7.163 9.208 12.553
hybrid contribution 0.664 -0.553 -1.374 1.624
sum -3.968 -7.717 7.834 11.690
Atomic orbital electron populations
1.22143 0.94859 1.03170 1.01778 1.21689 0.94928 0.81262 1.03639
1.47254 1.64807 1.13789 1.03317 1.18992 0.95052 0.92259 0.80115
1.21777 0.97819 1.31876 1.06497 0.92594 1.25657 1.01319 0.94666
0.96521 1.70016 1.37289 1.34103 1.14857 0.85557 0.80293 0.77901
0.78229 1.19311 1.20298 1.20953 1.19355 0.90581 0.92355 0.88085
1.21304 1.07461 1.02397 0.88853 1.21928 0.92731 0.91176 1.00602
1.16198 1.12313 0.93046 0.86074 1.25182 0.91907 0.91975 0.91943
1.81177 1.11222 1.08668 1.12765 1.67178 1.11609 1.37934 0.97808
1.22241 1.04728 0.92635 0.95163 0.91983 0.94285 0.89230 0.91195
0.88408 0.95970 0.96203 0.92443 0.80820 0.80539 0.83744
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.43 10.24 71.98 0.74 -2.69 16
2 C 0.11 2.76 5.89 86.38 0.51 3.27 16
3 N -0.59 -20.42 2.58 -701.11 -1.81 -22.23 16
4 C 0.26 11.54 4.91 85.63 0.42 11.96 16
5 C -0.54 -27.11 9.39 25.60 0.24 -26.87 16
6 H 0.06 2.82 7.81 -2.91 -0.02 2.80 16
7 C 0.02 0.95 5.46 84.65 0.46 1.41 16
8 N -0.92 -50.72 13.29 21.45 0.28 -50.44 16
9 Si 0.95 41.60 29.54 68.60 2.03 43.63 16
10 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16
11 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16
12 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16
13 C 0.21 6.85 6.57 38.52 0.25 7.10 16
14 C -0.17 -4.01 9.28 22.55 0.21 -3.80 16
15 C -0.04 -0.93 9.78 22.60 0.22 -0.71 16
16 C 0.06 1.89 6.59 40.57 0.27 2.15 16
17 C 0.31 9.50 15.53 88.33 1.37 10.88 16
18 N -0.46 -15.45 18.54 19.00 0.35 -15.10 16
19 N -0.44 -15.94 10.26 -188.46 -1.93 -17.87 16
20 C 0.02 0.78 10.37 85.02 0.88 1.67 16
21 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16
22 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16
23 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16
24 H 0.07 1.99 8.07 -2.38 -0.02 1.97 16
25 H 0.10 1.92 6.23 -2.39 -0.01 1.90 16
26 H 0.02 1.06 8.07 -2.39 -0.02 1.04 16
27 H 0.02 0.98 6.21 -2.39 -0.01 0.96 16
28 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16
29 H 0.17 2.82 6.25 -2.91 -0.02 2.80 16
30 H 0.18 2.46 8.06 -2.91 -0.02 2.43 16
31 H 0.15 6.19 6.14 -2.91 -0.02 6.17 16
Total: -1.00 -59.96 279.12 5.64 -54.32
By element:
Atomic # 1 Polarization: 2.16 SS G_CDS: 1.14 Total: 3.30 kcal
Atomic # 6 Polarization: -1.19 SS G_CDS: 5.57 Total: 4.38 kcal
Atomic # 7 Polarization: -102.53 SS G_CDS: -3.10 Total: -105.63 kcal
Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal
Total: -59.96 5.64 -54.32 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000129148681.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 105.767 kcal
(2) G-P(sol) polarization free energy of solvation -59.958 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.808 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.636 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.322 kcal
(6) G-S(sol) free energy of system = (1) + (5) 51.445 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds