Wall clock time and date at job start Mon Mar 30 2020 03:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46902 * 111.00124 * 2 1 4 4 C 1.50706 * 109.46577 * 66.04630 * 3 2 1 5 5 H 1.07995 * 120.00167 * 359.72326 * 4 3 2 6 6 C 1.37879 * 119.99394 * 180.02562 * 4 3 2 7 7 N 1.31514 * 119.99350 * 179.97438 * 6 4 3 8 8 Si 1.86798 * 120.00608 * 0.02562 * 6 4 3 9 9 H 1.48500 * 109.47353 * 89.99430 * 8 6 4 10 10 H 1.48494 * 109.47031 * 209.99977 * 8 6 4 11 11 H 1.48504 * 109.46680 * 329.99678 * 8 6 4 12 12 C 1.40037 * 111.00328 * 236.04602 * 2 1 3 13 13 C 1.38232 * 120.01904 * 63.67922 * 12 2 1 14 14 C 1.39813 * 119.84475 * 179.75017 * 13 12 2 15 15 C 1.43194 * 120.05422 * 180.23140 * 14 13 12 16 16 N 5.87489 * 93.06556 * 267.53253 * 2 1 3 17 17 C 1.39762 * 119.88976 * 0.49874 * 14 13 12 18 18 C 1.37802 * 120.04328 * 359.77914 * 17 14 13 19 19 C 1.38941 * 120.15867 * 359.96921 * 18 17 14 20 20 N 1.39488 * 119.94896 * 179.97438 * 19 18 17 21 21 H 1.09007 * 109.47149 * 60.00173 * 1 2 3 22 22 H 1.09002 * 109.47016 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47669 * 299.99609 * 1 2 3 24 24 H 1.09000 * 109.47263 * 306.04831 * 3 2 1 25 25 H 1.09001 * 109.47582 * 186.04110 * 3 2 1 26 26 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 27 27 H 1.08004 * 120.07803 * 359.97438 * 13 12 2 28 28 H 1.07996 * 119.98024 * 179.74983 * 17 14 13 29 29 H 1.07994 * 119.92215 * 179.97438 * 18 17 14 30 30 H 0.96996 * 120.00066 * 180.02562 * 20 19 18 31 31 H 0.97010 * 119.99906 * 0.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0470 1.2985 5 1 1.0703 1.5127 2.0468 6 6 2.0267 3.3494 1.5286 7 7 1.7134 3.9391 2.6615 8 14 2.9987 4.2767 0.2305 9 1 2.0612 4.9803 -0.6812 10 1 3.8853 5.2683 0.8906 11 1 3.8222 3.3183 -0.5496 12 6 1.9709 -0.7302 -1.0844 13 6 1.7233 -0.3071 -2.3769 14 6 2.2306 -1.0360 -3.4568 15 6 1.9810 -0.5991 -4.7974 16 7 1.7831 -0.2526 -5.8610 17 6 2.9769 -2.1949 -3.2257 18 6 3.2161 -2.6156 -1.9355 19 6 2.7173 -1.8899 -0.8608 20 7 2.9616 -2.3201 0.4434 21 1 -0.3634 0.5138 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8899 24 1 1.5611 1.9274 -0.8309 25 1 3.0797 1.3445 -0.1082 26 1 1.9873 4.8555 2.8233 27 1 1.1424 0.5864 -2.5521 28 1 3.3660 -2.7612 -4.0589 29 1 3.7927 -3.5116 -1.7592 30 1 2.6134 -1.8142 1.1942 31 1 3.4797 -3.1252 0.5995 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130267025.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:03 Heat of formation + Delta-G solvation = 63.670983 kcal Electronic energy + Delta-G solvation = -15393.628067 eV Core-core repulsion = 12868.132366 eV Total energy + Delta-G solvation = -2525.495701 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.81962 -36.77903 -35.90394 -34.18497 -32.56997 -30.00340 -28.89748 -27.78712 -25.04584 -23.04255 -22.45086 -20.50094 -18.20931 -17.03609 -16.88211 -16.57053 -15.00868 -14.68628 -14.40805 -13.99985 -13.73144 -13.49378 -13.43044 -13.09775 -12.55304 -12.47617 -12.26681 -12.03130 -11.69766 -11.29105 -11.17675 -10.72136 -10.46017 -10.34812 -9.91818 -9.40648 -8.68029 -8.65362 -7.75620 -7.30956 -6.12949 -4.11414 1.18027 1.49380 2.88640 3.18585 3.24905 3.33170 3.36083 4.03819 4.09952 4.21762 4.36261 4.52314 4.99799 5.16743 5.19660 5.54034 5.70757 5.86046 6.04807 6.07459 6.18697 6.32862 6.52056 6.60514 6.72739 6.78028 6.93291 7.46384 7.58005 7.70993 7.73208 8.00767 8.06555 8.56409 8.93723 9.48361 10.99641 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.023773 B = 0.008173 C = 0.006884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.500844 B = 3425.014591 C = 4066.330624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.494 5.494 3 C 0.166 3.834 4 C -0.513 4.513 5 H 0.082 0.918 6 C 0.072 3.928 7 N -0.897 5.897 8 Si 0.870 3.130 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.265 1.265 12 C 0.023 3.977 13 C -0.053 4.053 14 C -0.101 4.101 15 C 0.271 3.729 16 N -0.451 5.451 17 C -0.027 4.027 18 C -0.208 4.208 19 C 0.270 3.730 20 N -0.852 5.852 21 H 0.019 0.981 22 H 0.050 0.950 23 H 0.084 0.916 24 H -0.011 1.011 25 H 0.031 0.969 26 H 0.265 0.735 27 H 0.127 0.873 28 H 0.126 0.874 29 H 0.129 0.871 30 H 0.416 0.584 31 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.452 -13.385 -6.076 14.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.215 5.215 3 C 0.041 3.959 4 C -0.551 4.551 5 H 0.100 0.900 6 C -0.131 4.131 7 N -0.536 5.536 8 Si 0.698 3.302 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.190 1.190 12 C -0.076 4.076 13 C -0.077 4.077 14 C -0.108 4.108 15 C -0.043 4.043 16 N -0.128 5.128 17 C -0.049 4.049 18 C -0.232 4.232 19 C 0.159 3.841 20 N -0.388 5.388 21 H 0.038 0.962 22 H 0.069 0.931 23 H 0.102 0.898 24 H 0.007 0.993 25 H 0.049 0.951 26 H 0.074 0.926 27 H 0.144 0.856 28 H 0.144 0.856 29 H 0.147 0.853 30 H 0.248 0.752 31 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 2.301 -12.866 -7.130 14.889 hybrid contribution 0.423 0.905 -0.579 1.155 sum 2.724 -11.961 -7.709 14.488 Atomic orbital electron populations 1.22313 0.86621 1.00017 1.01738 1.59615 1.07940 1.16820 1.37125 1.20295 0.95422 0.82808 0.97330 1.20978 1.35864 0.97362 1.00944 0.89959 1.24861 0.95610 0.97324 0.95260 1.69882 1.46587 1.13295 1.23843 0.86930 0.80790 0.80275 0.82245 1.20238 1.21055 1.18985 1.18454 1.03275 0.96215 0.89657 1.21570 0.96397 0.98042 0.91672 1.15653 1.09778 1.00252 0.85079 1.25826 0.92770 0.92957 0.92750 1.81192 1.10389 1.09187 1.11987 1.20725 0.94205 0.93286 0.96649 1.20344 1.08669 1.03141 0.91040 1.17892 0.89948 0.90522 0.85748 1.42585 1.60196 1.30849 1.05160 0.96214 0.93115 0.89751 0.99309 0.95111 0.92557 0.85551 0.85613 0.85347 0.75198 0.77838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.70 9.09 60.06 0.55 1.24 16 2 N -0.49 -9.25 3.87 -180.17 -0.70 -9.95 16 3 C 0.17 3.78 3.38 -4.97 -0.02 3.76 16 4 C -0.51 -13.70 9.07 -34.44 -0.31 -14.01 16 5 H 0.08 2.36 7.34 -52.49 -0.39 1.97 16 6 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 7 N -0.90 -26.56 13.96 55.43 0.77 -25.78 16 8 Si 0.87 21.04 27.47 -169.99 -4.67 16.37 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.27 -6.21 6.54 56.52 0.37 -5.85 16 12 C 0.02 0.37 4.69 -83.56 -0.39 -0.02 16 13 C -0.05 -0.83 8.40 -39.00 -0.33 -1.16 16 14 C -0.10 -1.40 5.74 -106.82 -0.61 -2.01 16 15 C 0.27 4.10 15.32 -22.47 -0.34 3.76 16 16 N -0.45 -7.63 18.54 41.84 0.78 -6.86 16 17 C -0.03 -0.31 9.74 -39.17 -0.38 -0.69 16 18 C -0.21 -2.29 9.86 -39.48 -0.39 -2.68 16 19 C 0.27 3.63 6.77 -83.56 -0.57 3.07 16 20 N -0.85 -9.83 9.06 32.54 0.29 -9.53 16 21 H 0.02 0.33 7.46 -51.92 -0.39 -0.06 16 22 H 0.05 0.76 8.13 -51.93 -0.42 0.34 16 23 H 0.08 1.61 6.85 -51.93 -0.36 1.26 16 24 H -0.01 -0.25 6.91 -51.93 -0.36 -0.61 16 25 H 0.03 0.73 7.12 -51.93 -0.37 0.36 16 26 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 27 H 0.13 2.05 7.15 -52.48 -0.38 1.67 16 28 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 29 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 30 H 0.42 5.47 8.09 -40.82 -0.33 5.14 16 31 H 0.39 3.22 8.84 -40.82 -0.36 2.86 16 LS Contribution 273.49 15.07 4.12 4.12 Total: -1.00 -30.08 273.49 -5.65 -35.73 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -3.36 Total: 2.75 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: -2.90 Total: -6.84 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: 1.15 Total: -52.12 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.67 Total: 16.37 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.08 -5.65 -35.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130267025.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.403 kcal (2) G-P(sol) polarization free energy of solvation -30.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds