Wall clock time and date at job start Mon Mar 30 2020 03:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46902 * 111.00124 * 2 1 4 4 C 1.50706 * 109.46577 * 66.04630 * 3 2 1 5 5 H 1.07995 * 120.00167 * 359.72326 * 4 3 2 6 6 C 1.37879 * 119.99394 * 180.02562 * 4 3 2 7 7 N 1.31514 * 119.99350 * 179.97438 * 6 4 3 8 8 Si 1.86798 * 120.00608 * 0.02562 * 6 4 3 9 9 H 1.48500 * 109.47353 * 89.99430 * 8 6 4 10 10 H 1.48494 * 109.47031 * 209.99977 * 8 6 4 11 11 H 1.48504 * 109.46680 * 329.99678 * 8 6 4 12 12 C 1.40037 * 111.00328 * 236.04602 * 2 1 3 13 13 C 1.38232 * 120.01904 * 63.67922 * 12 2 1 14 14 C 1.39813 * 119.84475 * 179.75017 * 13 12 2 15 15 C 1.43194 * 120.05422 * 180.23140 * 14 13 12 16 16 N 5.87489 * 93.06556 * 267.53253 * 2 1 3 17 17 C 1.39762 * 119.88976 * 0.49874 * 14 13 12 18 18 C 1.37802 * 120.04328 * 359.77914 * 17 14 13 19 19 C 1.38941 * 120.15867 * 359.96921 * 18 17 14 20 20 N 1.39488 * 119.94896 * 179.97438 * 19 18 17 21 21 H 1.09007 * 109.47149 * 60.00173 * 1 2 3 22 22 H 1.09002 * 109.47016 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47669 * 299.99609 * 1 2 3 24 24 H 1.09000 * 109.47263 * 306.04831 * 3 2 1 25 25 H 1.09001 * 109.47582 * 186.04110 * 3 2 1 26 26 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 27 27 H 1.08004 * 120.07803 * 359.97438 * 13 12 2 28 28 H 1.07996 * 119.98024 * 179.74983 * 17 14 13 29 29 H 1.07994 * 119.92215 * 179.97438 * 18 17 14 30 30 H 0.96996 * 120.00066 * 180.02562 * 20 19 18 31 31 H 0.97010 * 119.99906 * 0.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0470 1.2985 5 1 1.0703 1.5127 2.0468 6 6 2.0267 3.3494 1.5286 7 7 1.7134 3.9391 2.6615 8 14 2.9987 4.2767 0.2305 9 1 2.0612 4.9803 -0.6812 10 1 3.8853 5.2683 0.8906 11 1 3.8222 3.3183 -0.5496 12 6 1.9709 -0.7302 -1.0844 13 6 1.7233 -0.3071 -2.3769 14 6 2.2306 -1.0360 -3.4568 15 6 1.9810 -0.5991 -4.7974 16 7 1.7831 -0.2526 -5.8610 17 6 2.9769 -2.1949 -3.2257 18 6 3.2161 -2.6156 -1.9355 19 6 2.7173 -1.8899 -0.8608 20 7 2.9616 -2.3201 0.4434 21 1 -0.3634 0.5138 -0.8901 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8899 24 1 1.5611 1.9274 -0.8309 25 1 3.0797 1.3445 -0.1082 26 1 1.9873 4.8555 2.8233 27 1 1.1424 0.5864 -2.5521 28 1 3.3660 -2.7612 -4.0589 29 1 3.7927 -3.5116 -1.7592 30 1 2.6134 -1.8142 1.1942 31 1 3.4797 -3.1252 0.5995 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130267025.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:02 Heat of formation + Delta-G solvation = 43.117652 kcal Electronic energy + Delta-G solvation = -15394.519327 eV Core-core repulsion = 12868.132366 eV Total energy + Delta-G solvation = -2526.386960 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.95969 -38.07512 -37.18438 -35.21642 -34.62130 -31.22950 -30.17852 -29.36878 -26.53685 -24.31580 -23.74822 -21.94255 -19.56068 -18.71927 -17.90398 -17.77386 -16.62577 -16.29130 -15.72827 -15.30857 -14.90908 -14.74323 -14.57971 -14.52060 -14.39285 -13.68971 -13.58628 -13.27156 -13.13626 -12.93156 -12.72554 -12.37937 -11.95190 -11.80875 -11.45713 -11.38012 -10.79099 -9.75029 -9.26704 -8.33613 -8.27702 -6.30163 0.11485 0.45443 1.33088 1.35882 1.44979 1.71408 2.06403 2.33231 3.00562 3.04376 3.05162 3.10867 3.26155 3.97127 4.21673 4.44401 4.54593 4.67048 4.74231 4.88525 4.90000 5.02861 5.18739 5.21191 5.32522 5.48914 5.56492 5.82192 5.99443 6.29961 6.52950 6.58707 6.76552 6.86886 7.14669 7.33367 8.87723 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.023773 B = 0.008173 C = 0.006884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.500844 B = 3425.014591 C = 4066.330624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.493 5.493 3 C 0.179 3.821 4 C -0.510 4.510 5 H 0.050 0.950 6 C 0.015 3.985 7 N -0.944 5.944 8 Si 0.932 3.068 9 H -0.273 1.273 10 H -0.281 1.281 11 H -0.251 1.251 12 C -0.013 4.013 13 C -0.059 4.059 14 C -0.111 4.111 15 C 0.289 3.711 16 N -0.488 5.488 17 C -0.008 4.008 18 C -0.193 4.193 19 C 0.271 3.729 20 N -0.844 5.844 21 H 0.019 0.981 22 H 0.077 0.923 23 H 0.057 0.943 24 H -0.015 1.015 25 H 0.026 0.974 26 H 0.266 0.734 27 H 0.109 0.891 28 H 0.160 0.840 29 H 0.169 0.831 30 H 0.409 0.591 31 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.048 -15.564 -7.560 17.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 N -0.214 5.214 3 C 0.052 3.948 4 C -0.549 4.549 5 H 0.068 0.932 6 C -0.183 4.183 7 N -0.584 5.584 8 Si 0.757 3.243 9 H -0.199 1.199 10 H -0.207 1.207 11 H -0.175 1.175 12 C -0.112 4.112 13 C -0.083 4.083 14 C -0.118 4.118 15 C -0.024 4.024 16 N -0.166 5.166 17 C -0.029 4.029 18 C -0.216 4.216 19 C 0.158 3.842 20 N -0.379 5.379 21 H 0.038 0.962 22 H 0.096 0.904 23 H 0.076 0.924 24 H 0.003 0.997 25 H 0.044 0.956 26 H 0.075 0.925 27 H 0.128 0.872 28 H 0.178 0.822 29 H 0.187 0.813 30 H 0.239 0.761 31 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 3.909 -15.096 -8.617 17.816 hybrid contribution -0.102 1.437 -0.053 1.442 sum 3.807 -13.658 -8.670 16.620 Atomic orbital electron populations 1.22260 0.86340 1.01323 1.00337 1.59433 1.08327 1.14534 1.39076 1.19986 0.95029 0.85061 0.94680 1.21230 1.34470 0.97350 1.01811 0.93221 1.25673 0.96913 0.98470 0.97212 1.70020 1.48542 1.13834 1.26039 0.85932 0.79548 0.79108 0.79719 1.19851 1.20682 1.17514 1.18483 1.06015 0.97819 0.88857 1.21429 0.96747 0.97938 0.92175 1.15680 1.11039 1.01408 0.83703 1.25994 0.91734 0.92004 0.92704 1.81209 1.11798 1.10352 1.13209 1.21117 0.92025 0.91802 0.98002 1.20737 1.07491 1.03557 0.89792 1.18073 0.89182 0.89812 0.87102 1.42606 1.59759 1.31233 1.04319 0.96242 0.90419 0.92408 0.99735 0.95595 0.92490 0.87249 0.82250 0.81327 0.76142 0.75712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.56 9.09 127.69 1.16 2.72 16 2 N -0.49 -18.36 3.87 -723.92 -2.80 -21.16 16 3 C 0.18 8.14 3.38 85.56 0.29 8.43 16 4 C -0.51 -27.96 9.07 25.60 0.23 -27.73 16 5 H 0.05 2.98 7.34 -2.91 -0.02 2.96 16 6 C 0.02 0.86 5.47 84.66 0.46 1.32 16 7 N -0.94 -57.39 13.96 21.45 0.30 -57.09 16 8 Si 0.93 43.63 27.47 68.60 1.88 45.51 16 9 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 10 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 11 H -0.25 -11.10 6.54 99.48 0.65 -10.44 16 12 C -0.01 -0.40 4.69 38.19 0.18 -0.22 16 13 C -0.06 -1.78 8.40 22.65 0.19 -1.59 16 14 C -0.11 -2.80 5.74 -21.29 -0.12 -2.93 16 15 C 0.29 8.25 15.32 88.33 1.35 9.61 16 16 N -0.49 -16.00 18.54 19.00 0.35 -15.65 16 17 C -0.01 -0.15 9.74 22.54 0.22 0.07 16 18 C -0.19 -3.26 9.86 22.34 0.22 -3.04 16 19 C 0.27 6.41 6.77 38.45 0.26 6.67 16 20 N -0.84 -17.01 9.06 -50.97 -0.46 -17.47 16 21 H 0.02 0.66 7.46 -2.38 -0.02 0.65 16 22 H 0.08 2.27 8.13 -2.39 -0.02 2.25 16 23 H 0.06 2.30 6.85 -2.39 -0.02 2.29 16 24 H -0.02 -0.69 6.91 -2.39 -0.02 -0.71 16 25 H 0.03 1.21 7.12 -2.39 -0.02 1.19 16 26 H 0.27 15.20 8.31 -92.70 -0.77 14.43 16 27 H 0.11 3.56 7.15 -2.91 -0.02 3.54 16 28 H 0.16 1.89 8.06 -2.91 -0.02 1.86 16 29 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 30 H 0.41 10.05 8.09 -92.71 -0.75 9.30 16 31 H 0.41 5.18 8.84 -92.70 -0.82 4.36 16 Total: -1.00 -66.62 273.49 3.27 -63.35 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -0.45 Total: 9.20 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: 4.45 Total: -6.69 kcal Atomic # 7 Polarization: -108.76 SS G_CDS: -2.61 Total: -111.37 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 1.88 Total: 45.51 kcal Total: -66.62 3.27 -63.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130267025.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.470 kcal (2) G-P(sol) polarization free energy of solvation -66.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds