Wall clock time and date at job start Mon Mar 30 2020 03:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47380 * 2 1 4 4 C 1.50704 * 109.47030 * 120.00161 * 2 1 3 5 5 H 1.07995 * 119.99752 * 120.00163 * 4 2 1 6 6 C 1.37879 * 119.99852 * 299.99786 * 4 2 1 7 7 N 1.31513 * 120.00025 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 119.99746 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47199 * 90.00691 * 8 6 4 10 10 H 1.48505 * 109.47328 * 210.00373 * 8 6 4 11 11 H 1.48499 * 109.47631 * 330.00321 * 8 6 4 12 12 N 1.46900 * 109.47614 * 240.00281 * 2 1 3 13 13 C 1.46907 * 110.99871 * 61.06516 * 12 2 1 14 14 C 1.39072 * 111.00234 * 185.02308 * 12 2 1 15 15 C 1.39035 * 120.60289 * 303.28993 * 14 12 2 16 16 N 1.31656 * 120.77321 * 179.97438 * 15 14 12 17 17 C 1.31948 * 122.18456 * 0.02562 * 16 15 14 18 18 C 1.37909 * 121.12211 * 359.97438 * 17 16 15 19 19 C 1.40021 * 119.07878 * 0.02562 * 18 17 16 20 20 C 1.43199 * 120.97427 * 179.97438 * 19 18 17 21 21 N 4.59643 * 103.63059 * 199.50307 * 2 1 3 22 22 H 1.08994 * 109.47621 * 298.07732 * 1 2 3 23 23 H 1.09001 * 109.47074 * 58.08097 * 1 2 3 24 24 H 1.09007 * 109.47218 * 178.07324 * 1 2 3 25 25 H 0.97002 * 119.99918 * 179.97438 * 7 6 4 26 26 H 1.08999 * 109.46457 * 183.95549 * 13 12 2 27 27 H 1.08995 * 109.47042 * 303.95842 * 13 12 2 28 28 H 1.08999 * 109.46503 * 63.95962 * 13 12 2 29 29 H 1.08002 * 119.61428 * 0.25326 * 15 14 12 30 30 H 1.07995 * 119.44043 * 179.97438 * 17 16 15 31 31 H 1.07999 * 120.45399 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4828 7 7 0.9427 0.8296 2.6034 8 14 2.3212 -1.1204 4.0079 9 1 3.6295 -0.5460 4.4124 10 1 1.3429 -0.9494 5.1120 11 1 2.4857 -2.5663 3.7120 12 7 2.0197 -0.6924 -1.1994 13 6 1.5697 -0.0116 -2.4210 14 6 3.4053 -0.8102 -1.1761 15 6 4.2096 0.3177 -1.0585 16 7 5.5216 0.2100 -1.0355 17 6 6.1327 -0.9562 -1.1222 18 6 5.4168 -2.1289 -1.2416 19 6 4.0181 -2.0723 -1.2711 20 6 3.2347 -3.2647 -1.3944 21 7 2.6131 -4.2107 -1.4913 22 1 -0.3634 0.4836 0.9066 23 1 -0.3633 0.5434 -0.8723 24 1 -0.3634 -1.0271 -0.0346 25 1 0.7081 1.1608 3.4844 26 1 1.8866 -0.5834 -3.2932 27 1 0.4826 0.0671 -2.4135 28 1 2.0061 0.9863 -2.4624 29 1 3.7528 1.2932 -0.9805 30 1 7.2117 -0.9931 -1.0993 31 1 5.9281 -3.0776 -1.3122 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135585777.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:45 Heat of formation + Delta-G solvation = 79.069244 kcal Electronic energy + Delta-G solvation = -15967.849172 eV Core-core repulsion = 13443.021190 eV Total energy + Delta-G solvation = -2524.827982 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.23679 -37.05118 -36.10607 -33.09918 -32.13378 -30.35522 -28.69298 -26.11992 -24.55742 -24.26112 -22.42970 -19.81135 -18.91296 -16.88304 -16.22257 -15.64073 -14.96767 -14.73607 -14.19342 -13.94970 -13.42829 -13.29972 -12.76382 -12.70881 -12.50700 -12.39924 -12.03267 -11.63788 -11.10667 -10.83610 -10.80288 -10.53718 -10.41203 -10.07817 -9.64213 -9.34398 -9.06076 -8.60985 -8.43774 -7.59823 -6.14110 -4.19470 1.03577 1.40058 3.12451 3.25049 3.31840 3.36645 3.47019 4.15085 4.26295 4.31336 4.46967 4.81953 5.17780 5.19810 5.30912 5.54195 5.74747 5.85210 5.90527 6.02129 6.22898 6.32018 6.65272 6.77722 6.87224 6.92155 7.23432 7.52517 7.67230 7.90736 8.00425 8.09073 8.23117 8.31833 8.84323 9.46551 10.92149 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.020236 B = 0.010911 C = 0.009956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.343239 B = 2565.647229 C = 2811.569011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.216 3.784 3 H 0.011 0.989 4 C -0.510 4.510 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.888 5.888 8 Si 0.893 3.107 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.273 1.273 12 N -0.517 5.517 13 C 0.029 3.971 14 C 0.148 3.852 15 C 0.085 3.915 16 N -0.462 5.462 17 C 0.074 3.926 18 C -0.126 4.126 19 C 0.016 3.984 20 C 0.280 3.720 21 N -0.420 5.420 22 H 0.091 0.909 23 H 0.012 0.988 24 H 0.035 0.965 25 H 0.263 0.737 26 H 0.055 0.945 27 H 0.078 0.922 28 H 0.026 0.974 29 H 0.159 0.841 30 H 0.158 0.842 31 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.798 -0.634 -7.678 10.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.113 3.887 3 H 0.029 0.971 4 C -0.548 4.548 5 H 0.077 0.923 6 C -0.136 4.136 7 N -0.526 5.526 8 Si 0.721 3.279 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.240 5.240 13 C -0.118 4.118 14 C 0.048 3.952 15 C -0.076 4.076 16 N -0.171 5.171 17 C -0.081 4.081 18 C -0.149 4.149 19 C 0.004 3.996 20 C -0.036 4.036 21 N -0.096 5.096 22 H 0.110 0.890 23 H 0.031 0.969 24 H 0.055 0.945 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.096 0.904 28 H 0.045 0.955 29 H 0.176 0.824 30 H 0.175 0.825 31 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.018 -1.692 -7.599 9.840 hybrid contribution 0.223 -0.048 1.047 1.071 sum 6.241 -1.740 -6.553 9.215 Atomic orbital electron populations 1.21864 0.96903 0.99766 1.00727 1.19462 0.92883 0.92020 0.84350 0.97107 1.21031 1.31530 1.12531 0.89734 0.92318 1.24846 0.94858 0.94922 0.98965 1.69858 1.36266 1.22741 1.23770 0.86556 0.78687 0.80219 0.82469 1.20488 1.21017 1.19827 1.59698 1.04848 1.54544 1.04869 1.22411 1.01894 0.96046 0.91446 1.19701 0.91453 0.91446 0.92568 1.23332 0.88974 0.99304 0.96030 1.67406 1.11570 1.28317 1.09846 1.22480 1.00283 0.87085 0.98244 1.22062 0.91933 1.00755 1.00113 1.16345 0.91440 0.87666 1.04163 1.25093 0.92777 0.92092 0.93606 1.81106 1.07970 1.12085 1.08402 0.89045 0.96867 0.94537 0.92712 0.92611 0.90374 0.95515 0.82430 0.82466 0.84329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.11 8.74 37.15 0.32 -2.78 16 2 C 0.22 5.08 1.71 -68.87 -0.12 4.96 16 3 H 0.01 0.28 7.16 -51.93 -0.37 -0.09 16 4 C -0.51 -13.43 8.03 -34.44 -0.28 -13.70 16 5 H 0.06 1.60 7.04 -52.49 -0.37 1.23 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.89 -24.26 11.31 55.43 0.63 -23.64 16 8 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 11 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 12 N -0.52 -10.43 4.07 -172.28 -0.70 -11.13 16 13 C 0.03 0.47 9.15 60.07 0.55 1.02 16 14 C 0.15 2.78 3.36 -83.38 -0.28 2.50 16 15 C 0.08 1.51 9.83 -17.33 -0.17 1.34 16 16 N -0.46 -7.62 10.33 -13.15 -0.14 -7.76 16 17 C 0.07 1.01 11.16 -17.62 -0.20 0.81 16 18 C -0.13 -1.72 9.86 -39.03 -0.38 -2.10 16 19 C 0.02 0.28 5.58 -106.40 -0.59 -0.32 16 20 C 0.28 5.26 14.95 -22.47 -0.34 4.93 16 21 N -0.42 -8.46 18.54 41.84 0.78 -7.69 16 22 H 0.09 2.33 6.02 -51.93 -0.31 2.01 16 23 H 0.01 0.25 6.44 -51.93 -0.33 -0.08 16 24 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.08 1.26 6.17 -51.93 -0.32 0.94 16 28 H 0.03 0.40 7.56 -51.93 -0.39 0.01 16 29 H 0.16 2.77 7.09 -52.49 -0.37 2.40 16 30 H 0.16 1.52 8.06 -52.49 -0.42 1.10 16 31 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 270.95 15.07 4.08 4.08 Total: -1.00 -29.05 270.95 -5.25 -34.30 By element: Atomic # 1 Polarization: 0.59 SS G_CDS: -3.30 Total: -2.70 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: -1.58 Total: -1.67 kcal Atomic # 7 Polarization: -50.77 SS G_CDS: 0.57 Total: -50.21 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -29.05 -5.25 -34.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135585777.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.367 kcal (2) G-P(sol) polarization free energy of solvation -29.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds