Wall clock time and date at job start Mon Mar 30 2020 03:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00106 * 2 1 4 4 H 1.48499 * 109.47106 * 270.00054 * 3 2 1 5 5 H 1.48497 * 109.47070 * 29.99900 * 3 2 1 6 6 H 1.48498 * 109.47201 * 150.00250 * 3 2 1 7 7 C 1.37878 * 119.99734 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00050 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99687 * 179.97438 * 7 2 1 10 10 H 1.09008 * 109.46904 * 60.00185 * 9 7 2 11 11 N 1.46896 * 109.47491 * 299.99994 * 9 7 2 12 12 C 1.50705 * 109.46950 * 179.97438 * 9 7 2 13 13 C 1.38637 * 120.76644 * 100.00544 * 12 9 7 14 14 C 1.38415 * 119.21996 * 179.97438 * 13 12 9 15 15 F 1.35102 * 119.60665 * 180.02562 * 14 13 12 16 16 N 1.32103 * 120.78604 * 359.97438 * 14 13 12 17 17 C 1.32059 * 121.67390 * 0.02562 * 16 14 13 18 18 F 1.35100 * 119.64441 * 179.97438 * 17 16 14 19 19 C 1.38692 * 120.70692 * 359.97438 * 17 16 14 20 20 F 1.35102 * 120.42620 * 180.02562 * 19 17 16 21 21 H 0.97001 * 119.99649 * 0.02562 * 1 2 3 22 22 H 1.00903 * 111.00104 * 299.99953 * 11 9 7 23 23 H 1.00897 * 110.99827 * 63.95312 * 11 9 7 24 24 H 1.07996 * 120.38939 * 0.24837 * 13 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 1 3.8752 -0.6804 0.8889 11 7 4.0008 -0.5014 -1.2005 12 6 4.0139 -2.6150 -0.0010 13 6 4.4449 -3.2149 -1.1742 14 6 4.9005 -4.5214 -1.1372 15 9 5.3229 -5.1134 -2.2757 16 7 4.9281 -5.1959 -0.0017 17 6 4.5256 -4.6572 1.1349 18 9 4.5711 -5.3848 2.2723 19 6 4.0566 -3.3525 1.1733 20 9 3.6467 -2.8069 2.3393 21 1 -0.4850 0.8401 -0.0004 22 1 3.6770 -0.9587 -2.0396 23 1 3.7314 0.4709 -1.1917 24 1 4.4296 -2.6678 -2.1052 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238616683.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:28 Heat of formation + Delta-G solvation = -102.120478 kcal Electronic energy + Delta-G solvation = -16049.543703 eV Core-core repulsion = 12741.450247 eV Total energy + Delta-G solvation = -3308.093455 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 232.052 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -50.73132 -50.26313 -49.78893 -41.21513 -37.49462 -34.38371 -32.73936 -31.48006 -28.56191 -26.01511 -24.89424 -22.60371 -19.85542 -19.42232 -19.27656 -18.84489 -18.06393 -17.74168 -16.86618 -16.84048 -16.26118 -16.13417 -15.78725 -15.56988 -15.14104 -14.68504 -14.34875 -13.93591 -13.67428 -13.51314 -13.15088 -12.83537 -12.26177 -11.75651 -11.32527 -10.99073 -10.88724 -10.00460 -9.58185 -8.44201 -6.57144 -0.63646 -0.38508 1.26049 1.36347 1.43722 1.60906 2.00476 2.19521 2.40179 2.88007 3.03068 3.13860 3.43194 3.81737 4.08459 4.30635 4.42088 4.65237 5.03214 5.18739 5.29347 5.85857 5.91249 6.19356 6.45809 6.60222 7.10127 8.71306 Molecular weight = 232.05amu Principal moments of inertia in cm(-1) A = 0.031411 B = 0.009351 C = 0.008034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.198665 B = 2993.694244 C = 3484.558233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.026 3.974 3 Si 0.934 3.066 4 H -0.245 1.245 5 H -0.294 1.294 6 H -0.243 1.243 7 C -0.557 4.557 8 H 0.036 0.964 9 C 0.216 3.784 10 H 0.063 0.937 11 N -0.833 5.833 12 C 0.019 3.981 13 C -0.147 4.147 14 C 0.337 3.663 15 F -0.092 7.092 16 N -0.544 5.544 17 C 0.314 3.686 18 F -0.096 7.096 19 C 0.017 3.983 20 F -0.118 7.118 21 H 0.272 0.728 22 H 0.346 0.654 23 H 0.327 0.673 24 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.009 -3.141 -2.361 10.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.175 4.175 3 Si 0.758 3.242 4 H -0.170 1.170 5 H -0.221 1.221 6 H -0.167 1.167 7 C -0.596 4.596 8 H 0.054 0.946 9 C 0.106 3.894 10 H 0.080 0.920 11 N -0.368 5.368 12 C 0.011 3.989 13 C -0.168 4.168 14 C 0.185 3.815 15 F -0.071 7.071 16 N -0.265 5.265 17 C 0.159 3.841 18 F -0.075 7.075 19 C -0.007 4.007 20 F -0.096 7.096 21 H 0.081 0.919 22 H 0.160 0.840 23 H 0.144 0.856 24 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 10.885 -4.087 -2.058 11.807 hybrid contribution -1.582 1.221 0.333 2.026 sum 9.302 -2.866 -1.725 9.885 Atomic orbital electron populations 1.70019 1.08262 1.28746 1.49684 1.25841 0.95553 1.02984 0.93108 0.86012 0.79343 0.78521 0.80298 1.16979 1.22083 1.16696 1.21533 0.90569 0.93853 1.53672 0.94567 1.18205 0.91750 0.86617 0.92815 0.91954 1.59637 1.65918 1.06120 1.05155 1.20349 0.90678 0.97630 0.90291 1.21752 1.00831 0.92975 1.01274 1.17418 0.95477 0.87972 0.80683 1.91678 1.86913 1.84377 1.44167 1.66043 1.22024 1.40311 0.98111 1.17173 0.99046 0.85699 0.82145 1.91664 1.93734 1.77347 1.44755 1.18193 1.06279 0.92063 0.84154 1.91540 1.88040 1.85336 1.44699 0.91865 0.83955 0.85632 0.79235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.39 13.96 21.45 0.30 -53.09 14 2 C 0.03 1.37 5.47 84.65 0.46 1.83 14 3 Si 0.93 38.42 24.61 68.60 1.69 40.11 14 4 H -0.25 -9.03 7.01 99.48 0.70 -8.33 14 5 H -0.29 -12.45 7.11 99.48 0.71 -11.74 14 6 H -0.24 -9.39 6.54 99.48 0.65 -8.74 14 7 C -0.56 -28.43 9.29 25.60 0.24 -28.19 14 8 H 0.04 2.11 7.98 -2.91 -0.02 2.08 14 9 C 0.22 8.90 2.25 43.43 0.10 8.99 14 10 H 0.06 2.68 7.07 -2.38 -0.02 2.66 14 11 N -0.83 -29.17 8.65 -174.94 -1.51 -30.68 14 12 C 0.02 0.70 5.05 -19.65 -0.10 0.60 14 13 C -0.15 -4.43 9.29 22.41 0.21 -4.22 14 14 C 0.34 10.12 8.41 84.69 0.71 10.84 14 15 F -0.09 -2.49 17.29 44.97 0.78 -1.71 14 16 N -0.54 -18.11 10.38 -197.87 -2.05 -20.17 14 17 C 0.31 10.78 8.42 84.77 0.71 11.49 14 18 F -0.10 -3.18 17.21 44.97 0.77 -2.40 14 19 C 0.02 0.63 7.29 22.50 0.16 0.80 14 20 F -0.12 -4.68 16.70 44.97 0.75 -3.93 14 21 H 0.27 14.60 8.31 -92.71 -0.77 13.83 14 22 H 0.35 10.90 7.36 -89.69 -0.66 10.24 14 23 H 0.33 11.66 4.30 -89.70 -0.39 11.27 14 24 H 0.19 4.71 6.38 -2.91 -0.02 4.69 14 Total: -1.00 -57.16 226.35 3.40 -53.77 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: 0.18 Total: 15.97 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: 2.50 Total: 2.14 kcal Atomic # 7 Polarization: -100.67 SS G_CDS: -3.27 Total: -103.94 kcal Atomic # 9 Polarization: -10.34 SS G_CDS: 2.30 Total: -8.04 kcal Atomic # 14 Polarization: 38.42 SS G_CDS: 1.69 Total: 40.11 kcal Total: -57.16 3.40 -53.77 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238616683.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.355 kcal (2) G-P(sol) polarization free energy of solvation -57.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds