Wall clock time and date at job start Mon Mar 30 2020 03:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30766 * 1 3 3 Si 1.86804 * 119.99759 * 2 1 4 4 H 1.48504 * 109.47026 * 274.98577 * 3 2 1 5 5 H 1.48499 * 109.47139 * 34.98808 * 3 2 1 6 6 H 1.48496 * 109.46715 * 154.98715 * 3 2 1 7 7 C 1.40014 * 119.99955 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99612 * 186.27251 * 7 2 1 9 9 C 1.41282 * 120.00199 * 6.26970 * 7 2 1 10 10 N 1.33789 * 119.82691 * 353.60975 * 9 7 2 11 11 C 1.31454 * 121.70812 * 180.02562 * 10 9 7 12 12 C 1.50702 * 119.41083 * 180.02562 * 11 10 9 13 13 F 1.39899 * 109.47204 * 119.99137 * 12 11 10 14 14 F 1.39899 * 109.47436 * 239.99819 * 12 11 10 15 15 C 1.38596 * 121.18370 * 359.73186 * 11 10 9 16 16 C 1.39449 * 119.52018 * 0.54589 * 15 11 10 17 17 N 1.39396 * 120.79390 * 179.74794 * 16 15 11 18 18 C 1.39410 * 118.41908 * 359.47327 * 16 15 11 19 19 F 1.35102 * 120.58717 * 180.22717 * 18 16 15 20 20 H 0.97000 * 120.00032 * 359.97438 * 1 2 3 21 21 H 1.09007 * 109.46878 * 359.97438 * 12 11 10 22 22 H 1.08004 * 120.24062 * 180.26832 * 15 11 10 23 23 H 0.96997 * 120.00308 * 179.72058 * 17 16 15 24 24 H 0.97008 * 119.99322 * 359.44647 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2416 1.6178 0.0000 4 1 2.3837 2.1073 -1.3948 5 1 1.4957 2.6200 0.8028 6 1 3.5878 1.4121 0.5920 7 6 2.0077 -1.2126 -0.0005 8 1 3.0829 -1.2153 0.1017 9 6 1.3077 -2.4324 -0.1347 10 7 -0.0302 -2.4356 -0.1322 11 6 -0.7187 -3.5488 -0.2540 12 6 -2.2246 -3.4923 -0.2452 13 9 -2.7176 -4.0042 -1.4502 14 9 -2.7137 -4.2553 0.8205 15 6 -0.0845 -4.7729 -0.3965 16 6 1.3089 -4.8286 -0.3998 17 7 1.9741 -6.0459 -0.5361 18 6 2.0208 -3.6371 -0.2692 19 9 3.3718 -3.6397 -0.2714 20 1 -0.4850 0.8400 0.0004 21 1 -2.5487 -2.4579 -0.1298 22 1 -0.6652 -5.6776 -0.4998 23 1 2.9438 -6.0709 -0.5409 24 1 1.4673 -6.8685 -0.6222 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238639006.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:53 Heat of formation + Delta-G solvation = -141.685646 kcal Electronic energy + Delta-G solvation = -16027.140352 eV Core-core repulsion = 12717.331223 eV Total energy + Delta-G solvation = -3309.809130 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 232.052 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.89545 -49.17316 -47.88596 -40.16956 -36.44827 -35.22425 -32.35772 -30.18670 -28.37991 -26.77164 -23.50487 -22.53345 -19.72229 -18.97384 -18.13881 -18.10115 -17.83524 -17.61070 -16.60874 -16.36606 -16.16788 -15.43104 -14.90515 -14.86504 -14.35248 -14.29603 -13.89154 -13.72675 -13.47257 -13.00851 -12.82482 -12.61177 -12.22332 -12.09589 -11.69713 -11.16924 -9.87251 -9.69347 -8.66031 -8.47824 -6.66724 0.46232 1.01726 1.41886 1.51795 1.56412 2.20449 2.64369 2.70736 2.98527 3.36333 3.52786 3.81633 4.01716 4.28283 4.50991 4.63444 4.89826 5.16305 5.21562 5.42157 5.62587 6.09725 6.36590 6.65086 6.76489 7.01196 7.82178 8.30441 Molecular weight = 232.05amu Principal moments of inertia in cm(-1) A = 0.022389 B = 0.011215 C = 0.007842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.289306 B = 2496.119427 C = 3569.822110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.738 5.738 2 C 0.029 3.971 3 Si 0.991 3.009 4 H -0.262 1.262 5 H -0.260 1.260 6 H -0.259 1.259 7 C -0.445 4.445 8 H 0.088 0.912 9 C 0.231 3.769 10 N -0.494 5.494 11 C 0.091 3.909 12 C 0.336 3.664 13 F -0.203 7.203 14 F -0.203 7.203 15 C -0.330 4.330 16 C 0.248 3.752 17 N -0.856 5.856 18 C -0.175 4.175 19 F -0.160 7.160 20 H 0.288 0.712 21 H 0.138 0.862 22 H 0.130 0.870 23 H 0.403 0.597 24 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.941 -3.204 -0.557 3.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.359 5.359 2 C -0.195 4.195 3 Si 0.811 3.189 4 H -0.186 1.186 5 H -0.184 1.184 6 H -0.183 1.183 7 C -0.475 4.475 8 H 0.106 0.894 9 C 0.107 3.893 10 N -0.209 5.209 11 C -0.057 4.057 12 C 0.281 3.719 13 F -0.184 7.184 14 F -0.184 7.184 15 C -0.359 4.359 16 C 0.136 3.864 17 N -0.398 5.398 18 C -0.203 4.203 19 F -0.140 7.140 20 H 0.099 0.901 21 H 0.155 0.845 22 H 0.148 0.852 23 H 0.232 0.768 24 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -1.538 -2.246 -0.457 2.760 hybrid contribution 1.127 -0.800 -0.147 1.390 sum -0.411 -3.047 -0.604 3.133 Atomic orbital electron populations 1.70123 1.08765 1.30120 1.26864 1.26962 0.95853 1.04375 0.92341 0.85051 0.79003 0.75316 0.79552 1.18623 1.18410 1.18262 1.19930 0.95376 0.90375 1.41802 0.89379 1.18668 0.88163 0.91826 0.90690 1.68386 1.06509 1.25851 1.20200 1.21548 0.95670 0.90808 0.97682 1.20080 0.87473 0.93569 0.70734 1.92940 1.88722 1.89756 1.46998 1.92940 1.88860 1.79470 1.57143 1.20594 0.91777 0.98620 1.24890 1.17616 0.91586 0.85665 0.91541 1.41996 1.09284 1.04766 1.83769 1.18324 0.76864 0.94863 1.30255 1.91193 1.29314 1.97239 1.96220 0.90052 0.84496 0.85171 0.76798 0.75937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -37.04 11.49 21.84 0.25 -36.79 14 2 C 0.03 1.40 5.49 85.28 0.47 1.87 14 3 Si 0.99 36.48 29.56 68.60 2.03 38.51 14 4 H -0.26 -9.33 7.11 99.48 0.71 -8.62 14 5 H -0.26 -8.92 7.11 99.48 0.71 -8.21 14 6 H -0.26 -9.41 7.11 99.48 0.71 -8.70 14 7 C -0.45 -23.96 8.98 23.45 0.21 -23.75 14 8 H 0.09 4.62 7.45 -2.91 -0.02 4.59 14 9 C 0.23 12.76 6.55 40.18 0.26 13.02 14 10 N -0.49 -26.41 7.77 -177.31 -1.38 -27.79 14 11 C 0.09 4.29 6.28 42.70 0.27 4.56 14 12 C 0.34 13.22 5.53 71.24 0.39 13.61 14 13 F -0.20 -7.71 17.24 44.97 0.78 -6.94 14 14 F -0.20 -7.70 17.25 44.97 0.78 -6.92 14 15 C -0.33 -14.40 9.50 22.65 0.22 -14.18 14 16 C 0.25 10.87 6.81 38.51 0.26 11.13 14 17 N -0.86 -27.90 9.09 -50.91 -0.46 -28.36 14 18 C -0.17 -8.87 7.36 23.14 0.17 -8.70 14 19 F -0.16 -7.82 16.05 44.97 0.72 -7.10 14 20 H 0.29 12.78 8.29 -92.71 -0.77 12.01 14 21 H 0.14 5.10 8.10 -2.38 -0.02 5.08 14 22 H 0.13 4.97 8.06 -2.91 -0.02 4.95 14 23 H 0.40 12.06 8.41 -92.71 -0.78 11.28 14 24 H 0.41 10.57 8.86 -92.70 -0.82 9.74 14 Total: -1.00 -60.36 235.44 4.65 -55.71 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: -0.31 Total: 22.12 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: 2.25 Total: -2.44 kcal Atomic # 7 Polarization: -91.35 SS G_CDS: -1.59 Total: -92.94 kcal Atomic # 9 Polarization: -23.23 SS G_CDS: 2.27 Total: -20.96 kcal Atomic # 14 Polarization: 36.48 SS G_CDS: 2.03 Total: 38.51 kcal Total: -60.36 4.65 -55.71 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238639006.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.980 kcal (2) G-P(sol) polarization free energy of solvation -60.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds