Wall clock time and date at job start Mon Mar 30 2020 03:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30773 * 1 3 3 Si 1.86798 * 119.99833 * 2 1 4 4 H 1.48497 * 109.47270 * 239.99785 * 3 2 1 5 5 H 1.48498 * 109.47366 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47318 * 119.99344 * 3 2 1 7 7 C 1.40051 * 120.00280 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99633 * 180.02562 * 7 2 1 9 9 C 1.40835 * 119.99888 * 0.02562 * 7 2 1 10 10 N 1.33796 * 119.89950 * 0.26773 * 9 7 2 11 11 C 1.31474 * 121.55444 * 180.30870 * 10 9 7 12 12 F 1.35107 * 119.40657 * 179.69879 * 11 10 9 13 13 C 1.39386 * 121.19055 * 359.68387 * 11 10 9 14 14 C 1.38365 * 119.67003 * 0.02562 * 13 11 10 15 15 C 1.50699 * 120.72457 * 179.97438 * 14 13 11 16 16 F 1.39897 * 109.47377 * 120.02247 * 15 14 13 17 17 F 1.39907 * 109.47091 * 240.02077 * 15 14 13 18 18 C 1.39345 * 118.55047 * 0.02562 * 14 13 11 19 19 N 1.38600 * 120.58528 * 179.97438 * 18 14 13 20 20 H 0.96998 * 120.00682 * 0.02562 * 1 2 3 21 21 H 1.08002 * 120.16774 * 180.02562 * 13 11 10 22 22 H 1.08993 * 109.47299 * 0.02562 * 15 14 13 23 23 H 0.97001 * 120.00179 * 0.02562 * 19 18 14 24 24 H 0.97005 * 120.00096 * 179.72395 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2417 1.6177 0.0000 4 1 3.0955 1.6964 -1.2124 5 1 1.2767 2.7465 -0.0006 6 1 3.0953 1.6966 1.2126 7 6 2.0080 -1.2128 0.0005 8 1 3.0881 -1.2127 0.0010 9 6 1.3039 -2.4325 0.0005 10 7 -0.0340 -2.4302 -0.0054 11 6 -0.7240 -3.5494 0.0004 12 9 -2.0740 -3.4964 0.0002 13 6 -0.0879 -4.7896 0.0065 14 6 1.2945 -4.8503 0.0070 15 6 2.0068 -6.1783 0.0141 16 9 2.8089 -6.2833 -1.1272 17 9 2.8080 -6.2716 1.1573 18 6 2.0135 -3.6567 0.0019 19 7 3.3995 -3.6683 0.0026 20 1 -0.4851 0.8400 -0.0004 21 1 -0.6710 -5.6986 0.0109 22 1 1.2730 -6.9842 0.0178 23 1 3.8774 -4.5124 0.0064 24 1 3.8915 -2.8324 -0.0050 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238660857.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:25 Heat of formation + Delta-G solvation = -134.523979 kcal Electronic energy + Delta-G solvation = -16122.782647 eV Core-core repulsion = 12813.284071 eV Total energy + Delta-G solvation = -3309.498576 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 232.052 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.90257 -49.43344 -47.85383 -40.30753 -35.73219 -35.51611 -33.12301 -30.07883 -27.79992 -26.87106 -23.34598 -22.73458 -19.74770 -19.23629 -18.22767 -18.09384 -17.48997 -17.11938 -16.79225 -16.45076 -16.29314 -15.85482 -14.84122 -14.78996 -14.26655 -14.15563 -14.01183 -13.73445 -13.29781 -13.10492 -12.85656 -12.51306 -12.16417 -11.79501 -11.65692 -11.19039 -10.17583 -9.82547 -8.59171 -8.37677 -6.40922 0.63508 0.82884 1.42793 1.52953 1.55651 2.20559 2.70746 2.88027 3.20902 3.31879 3.60781 3.63118 3.84558 4.25540 4.42309 4.57259 5.04477 5.06815 5.17381 5.33624 5.86806 6.13376 6.39343 6.67183 6.90341 7.13543 7.87510 8.38215 Molecular weight = 232.05amu Principal moments of inertia in cm(-1) A = 0.027848 B = 0.010008 C = 0.007716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.207897 B = 2797.147424 C = 3627.854676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.753 5.753 2 C 0.019 3.981 3 Si 0.993 3.007 4 H -0.254 1.254 5 H -0.275 1.275 6 H -0.254 1.254 7 C -0.444 4.444 8 H 0.109 0.891 9 C 0.215 3.785 10 N -0.536 5.536 11 C 0.237 3.763 12 F -0.150 7.150 13 C -0.256 4.256 14 C -0.208 4.208 15 C 0.330 3.670 16 F -0.209 7.209 17 F -0.209 7.209 18 C 0.118 3.882 19 N -0.850 5.850 20 H 0.281 0.719 21 H 0.146 0.854 22 H 0.154 0.846 23 H 0.395 0.605 24 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.626 -5.565 0.025 7.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.375 5.375 2 C -0.203 4.203 3 Si 0.812 3.188 4 H -0.178 1.178 5 H -0.200 1.200 6 H -0.178 1.178 7 C -0.477 4.477 8 H 0.127 0.873 9 C 0.083 3.917 10 N -0.256 5.256 11 C 0.082 3.918 12 F -0.129 7.129 13 C -0.282 4.282 14 C -0.220 4.220 15 C 0.277 3.723 16 F -0.191 7.191 17 F -0.191 7.191 18 C 0.008 3.992 19 N -0.393 5.393 20 H 0.091 0.909 21 H 0.164 0.836 22 H 0.171 0.829 23 H 0.224 0.776 24 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 4.902 -4.691 0.021 6.785 hybrid contribution 0.435 0.012 -0.003 0.435 sum 5.337 -4.679 0.018 7.098 Atomic orbital electron populations 1.70263 1.09282 1.29540 1.28447 1.27065 0.95626 1.04899 0.92736 0.85095 0.78423 0.74885 0.80370 1.17828 1.20009 1.17819 1.19789 0.95246 0.89585 1.43081 0.87336 1.18437 0.86441 0.92144 0.94634 1.67931 1.08345 1.27079 1.22277 1.18578 0.77891 0.91528 1.03797 1.91407 1.29667 1.97344 1.94516 1.20621 0.93417 0.96381 1.17737 1.19658 0.93745 0.93088 1.15520 1.20314 0.84709 0.96950 0.70332 1.92954 1.76854 1.97211 1.52056 1.92957 1.76904 1.97306 1.51909 1.18800 0.85961 0.93703 1.00690 1.41866 1.01949 1.10922 1.84563 0.90877 0.83650 0.82897 0.77572 0.76586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -40.53 11.46 21.84 0.25 -40.28 14 2 C 0.02 0.93 5.50 85.29 0.47 1.40 14 3 Si 0.99 35.92 29.56 68.60 2.03 37.95 14 4 H -0.25 -8.73 7.11 99.48 0.71 -8.03 14 5 H -0.28 -9.82 7.11 99.48 0.71 -9.12 14 6 H -0.25 -8.73 7.11 99.48 0.71 -8.02 14 7 C -0.44 -22.15 8.88 23.35 0.21 -21.94 14 8 H 0.11 4.69 6.10 -2.91 -0.02 4.67 14 9 C 0.22 11.37 6.57 40.28 0.26 11.64 14 10 N -0.54 -30.50 7.86 -189.64 -1.49 -31.99 14 11 C 0.24 12.23 8.41 85.02 0.71 12.95 14 12 F -0.15 -7.52 17.29 44.97 0.78 -6.74 14 13 C -0.26 -11.01 9.73 22.58 0.22 -10.79 14 14 C -0.21 -8.53 5.41 -19.57 -0.11 -8.63 14 15 C 0.33 10.31 4.96 71.24 0.35 10.66 14 16 F -0.21 -6.71 16.38 44.97 0.74 -5.97 14 17 F -0.21 -6.71 16.37 44.97 0.74 -5.98 14 18 C 0.12 5.35 6.72 39.14 0.26 5.61 14 19 N -0.85 -31.30 8.78 -50.14 -0.44 -31.74 14 20 H 0.28 13.77 8.29 -92.71 -0.77 13.00 14 21 H 0.15 5.06 7.99 -2.91 -0.02 5.03 14 22 H 0.15 3.52 7.93 -2.39 -0.02 3.50 14 23 H 0.39 12.91 6.44 -92.71 -0.60 12.32 14 24 H 0.40 13.77 6.82 -92.70 -0.63 13.14 14 Total: -1.00 -62.41 228.76 5.04 -57.37 By element: Atomic # 1 Polarization: 26.43 SS G_CDS: 0.06 Total: 26.49 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: 2.39 Total: 0.90 kcal Atomic # 7 Polarization: -102.34 SS G_CDS: -1.68 Total: -104.02 kcal Atomic # 9 Polarization: -20.94 SS G_CDS: 2.25 Total: -18.69 kcal Atomic # 14 Polarization: 35.92 SS G_CDS: 2.03 Total: 37.95 kcal Total: -62.41 5.04 -57.37 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238660857.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.158 kcal (2) G-P(sol) polarization free energy of solvation -62.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds