Wall clock time and date at job start Mon Mar 30 2020 03:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.46505 * 119.99508 * 2 1 4 4 C 1.50691 * 109.47222 * 269.99666 * 3 2 1 5 5 H 1.08002 * 119.99739 * 0.02562 * 4 3 2 6 6 C 1.37872 * 120.00131 * 180.02562 * 4 3 2 7 7 N 1.31511 * 119.99970 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 119.99977 * 180.02562 * 6 4 3 9 9 H 1.48492 * 109.47133 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47467 * 119.99640 * 8 6 4 11 11 H 1.48504 * 109.46932 * 239.99686 * 8 6 4 12 12 C 1.39920 * 120.00061 * 179.97438 * 2 1 3 13 13 C 1.39382 * 119.81455 * 180.02562 * 12 2 1 14 14 C 1.37746 * 120.38906 * 179.97438 * 13 12 2 15 15 C 1.38827 * 119.92823 * 0.02562 * 14 13 12 16 16 N 1.38292 * 133.96874 * 180.32203 * 15 14 13 17 17 H 0.97000 * 126.35571 * 359.90195 * 16 15 14 18 18 C 1.35984 * 107.28740 * 180.02562 * 16 15 14 19 19 N 1.30127 * 110.10812 * 359.63420 * 18 16 15 20 20 C 1.35796 * 109.67371 * 0.22649 * 19 18 16 21 21 C 1.38191 * 119.81676 * 0.02562 * 12 2 1 22 22 H 1.09002 * 109.46702 * 269.99709 * 1 2 3 23 23 H 1.08994 * 109.47157 * 30.00063 * 1 2 3 24 24 H 1.09002 * 109.46802 * 150.00089 * 1 2 3 25 25 H 1.08994 * 109.47197 * 30.00517 * 3 2 1 26 26 H 1.09007 * 109.46620 * 149.99738 * 3 2 1 27 27 H 0.97006 * 120.00127 * 180.02562 * 7 6 4 28 28 H 1.08005 * 119.80567 * 0.02562 * 13 12 2 29 29 H 1.07997 * 120.03871 * 180.02562 * 14 13 12 30 30 H 1.08002 * 124.94899 * 179.90451 * 18 16 15 31 31 H 1.08006 * 120.14608 * 0.02562 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 -1.4207 5 1 2.0975 1.0962 -2.2416 6 6 3.1268 2.8775 -1.6727 7 7 3.5540 3.6177 -0.6731 8 14 3.4376 3.4171 -3.4339 9 1 2.8598 2.4171 -4.3672 10 1 2.8004 4.7381 -3.6667 11 1 4.9001 3.5248 -3.6678 12 6 2.1647 -1.2117 0.0005 13 6 3.5585 -1.2072 0.0011 14 6 4.2592 -2.3932 0.0021 15 6 3.5756 -3.6015 0.0022 16 7 3.9692 -4.9272 0.0086 17 1 4.8817 -5.2561 0.0135 18 6 2.8395 -5.6841 0.0041 19 7 1.7877 -4.9180 0.0031 20 6 2.1710 -3.6152 0.0019 21 6 1.4699 -2.4063 0.0005 22 1 -0.3633 -0.0001 1.0277 23 1 -0.3633 0.8899 -0.5138 24 1 -0.3633 -0.8900 -0.5138 25 1 1.6084 2.0284 0.5139 26 1 3.1500 1.1385 0.5139 27 1 4.0308 4.4437 -0.8503 28 1 4.0923 -0.2683 0.0015 29 1 5.3391 -2.3830 0.0030 30 1 2.8182 -6.7639 0.0058 31 1 0.3899 -2.4056 -0.0003 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258966670.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:51 Heat of formation + Delta-G solvation = 80.472431 kcal Electronic energy + Delta-G solvation = -15425.376565 eV Core-core repulsion = 12900.609429 eV Total energy + Delta-G solvation = -2524.767136 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.50958 -37.88458 -34.57646 -32.79494 -32.44374 -29.45294 -28.47369 -27.55173 -24.97654 -22.69302 -22.26239 -21.10889 -19.92806 -17.70904 -16.58252 -16.22173 -15.89688 -14.84762 -14.73279 -14.15773 -13.71441 -13.57471 -13.43129 -12.65525 -12.24481 -11.94448 -11.48851 -11.42958 -11.27259 -11.00009 -10.79362 -10.42521 -10.26849 -10.04592 -9.67983 -9.50097 -8.61543 -8.50906 -7.67850 -6.40975 -5.99108 -4.17471 1.49937 2.31214 3.25121 3.27416 3.30972 3.33477 3.38980 4.12402 4.40253 4.54613 4.71893 5.09784 5.21553 5.57111 5.82911 5.84316 5.92219 6.05581 6.13865 6.16030 6.37172 6.52217 6.86428 6.90926 7.08877 7.15668 7.30793 7.33561 7.71373 7.81578 8.16354 8.25179 8.31408 8.50209 8.92981 9.49736 10.95309 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.036017 B = 0.006565 C = 0.006079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.219742 B = 4263.723445 C = 4604.949640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.616 5.616 3 C 0.249 3.751 4 C -0.531 4.531 5 H 0.061 0.939 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.235 3.765 13 C -0.141 4.141 14 C -0.079 4.079 15 C -0.019 4.019 16 N -0.605 5.605 17 H 0.415 0.585 18 C 0.245 3.755 19 N -0.511 5.511 20 C 0.092 3.908 21 C -0.191 4.191 22 H 0.036 0.964 23 H 0.067 0.933 24 H 0.056 0.944 25 H 0.032 0.968 26 H 0.035 0.965 27 H 0.263 0.737 28 H 0.143 0.857 29 H 0.116 0.884 30 H 0.206 0.794 31 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.978 -13.204 2.029 13.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.323 5.323 3 C 0.129 3.871 4 C -0.570 4.570 5 H 0.079 0.921 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.723 3.277 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.127 3.873 13 C -0.163 4.163 14 C -0.101 4.101 15 C -0.127 4.127 16 N -0.219 5.219 17 H 0.253 0.747 18 C -0.042 4.042 19 N -0.233 5.233 20 C -0.026 4.026 21 C -0.218 4.218 22 H 0.054 0.946 23 H 0.085 0.915 24 H 0.075 0.925 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.073 0.927 28 H 0.161 0.839 29 H 0.134 0.866 30 H 0.223 0.777 31 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.061 -12.997 2.076 13.162 hybrid contribution 1.533 0.421 -1.037 1.898 sum 1.593 -12.577 1.039 12.720 Atomic orbital electron populations 1.21478 0.81321 1.01985 0.99756 1.47043 1.04389 1.04102 1.76734 1.19289 0.92059 0.78810 0.96922 1.21659 1.36130 1.06407 0.92794 0.92110 1.24960 0.95471 0.96291 0.97350 1.69939 1.38474 1.14361 1.30680 0.86483 0.77980 0.78507 0.84760 1.19715 1.20937 1.20901 1.17548 0.90978 0.85923 0.92857 1.20840 0.92727 0.98053 1.04670 1.19653 0.98515 0.88833 1.03072 1.18717 0.95538 0.84861 1.13539 1.42992 1.09430 1.05336 1.64109 0.74732 1.25090 0.80598 0.98403 1.00124 1.70361 1.28867 1.01155 1.22891 1.18581 0.89905 0.91209 1.02891 1.19407 0.98921 0.87980 1.15509 0.94567 0.91462 0.92544 0.95036 0.94691 0.92715 0.83933 0.86623 0.77734 0.86084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.79 10.18 59.85 0.61 2.40 16 2 N -0.62 -13.31 3.00 -180.99 -0.54 -13.86 16 3 C 0.25 6.17 4.91 -5.19 -0.03 6.15 16 4 C -0.53 -14.35 9.39 -34.45 -0.32 -14.68 16 5 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 6 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 7 N -0.90 -25.38 13.29 55.43 0.74 -24.64 16 8 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 9 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 C 0.23 4.88 6.55 -83.76 -0.55 4.33 16 13 C -0.14 -2.80 9.19 -39.34 -0.36 -3.16 16 14 C -0.08 -1.35 10.06 -39.54 -0.40 -1.75 16 15 C -0.02 -0.32 7.30 -83.89 -0.61 -0.93 16 16 N -0.61 -7.51 6.24 -11.72 -0.07 -7.58 16 17 H 0.42 3.45 8.96 -40.82 -0.37 3.08 16 18 C 0.24 3.06 12.97 -89.82 -1.16 1.90 16 19 N -0.51 -8.82 11.27 -12.06 -0.14 -8.95 16 20 C 0.09 1.74 7.22 -84.71 -0.61 1.13 16 21 C -0.19 -3.76 9.25 -39.03 -0.36 -4.12 16 22 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 24 H 0.06 0.94 6.18 -51.93 -0.32 0.62 16 25 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 26 H 0.04 0.90 6.18 -51.92 -0.32 0.58 16 27 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.14 3.02 6.11 -52.48 -0.32 2.70 16 29 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 30 H 0.21 1.44 8.06 -52.49 -0.42 1.02 16 31 H 0.12 2.26 6.11 -52.48 -0.32 1.94 16 LS Contribution 267.19 15.07 4.03 4.03 Total: -1.00 -31.79 267.19 -8.20 -40.00 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -3.30 Total: 2.04 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -3.89 Total: -7.15 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: -0.02 Total: -55.03 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -31.79 -8.20 -40.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258966670.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.468 kcal (2) G-P(sol) polarization free energy of solvation -31.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds