Wall clock time and date at job start Mon Mar 30 2020 03:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.46505 * 119.99508 * 2 1 4 4 C 1.50691 * 109.47222 * 269.99666 * 3 2 1 5 5 H 1.08002 * 119.99739 * 0.02562 * 4 3 2 6 6 C 1.37872 * 120.00131 * 180.02562 * 4 3 2 7 7 N 1.31511 * 119.99970 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 119.99977 * 180.02562 * 6 4 3 9 9 H 1.48492 * 109.47133 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47467 * 119.99640 * 8 6 4 11 11 H 1.48504 * 109.46932 * 239.99686 * 8 6 4 12 12 C 1.39920 * 120.00061 * 179.97438 * 2 1 3 13 13 C 1.39382 * 119.81455 * 180.02562 * 12 2 1 14 14 C 1.37746 * 120.38906 * 179.97438 * 13 12 2 15 15 C 1.38827 * 119.92823 * 0.02562 * 14 13 12 16 16 N 1.38292 * 133.96874 * 180.32203 * 15 14 13 17 17 H 0.97000 * 126.35571 * 359.90195 * 16 15 14 18 18 C 1.35984 * 107.28740 * 180.02562 * 16 15 14 19 19 N 1.30127 * 110.10812 * 359.63420 * 18 16 15 20 20 C 1.35796 * 109.67371 * 0.22649 * 19 18 16 21 21 C 1.38191 * 119.81676 * 0.02562 * 12 2 1 22 22 H 1.09002 * 109.46702 * 269.99709 * 1 2 3 23 23 H 1.08994 * 109.47157 * 30.00063 * 1 2 3 24 24 H 1.09002 * 109.46802 * 150.00089 * 1 2 3 25 25 H 1.08994 * 109.47197 * 30.00517 * 3 2 1 26 26 H 1.09007 * 109.46620 * 149.99738 * 3 2 1 27 27 H 0.97006 * 120.00127 * 180.02562 * 7 6 4 28 28 H 1.08005 * 119.80567 * 0.02562 * 13 12 2 29 29 H 1.07997 * 120.03871 * 180.02562 * 14 13 12 30 30 H 1.08002 * 124.94899 * 179.90451 * 18 16 15 31 31 H 1.08006 * 120.14608 * 0.02562 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 -1.4207 5 1 2.0975 1.0962 -2.2416 6 6 3.1268 2.8775 -1.6727 7 7 3.5540 3.6177 -0.6731 8 14 3.4376 3.4171 -3.4339 9 1 2.8598 2.4171 -4.3672 10 1 2.8004 4.7381 -3.6667 11 1 4.9001 3.5248 -3.6678 12 6 2.1647 -1.2117 0.0005 13 6 3.5585 -1.2072 0.0011 14 6 4.2592 -2.3932 0.0021 15 6 3.5756 -3.6015 0.0022 16 7 3.9692 -4.9272 0.0086 17 1 4.8817 -5.2561 0.0135 18 6 2.8395 -5.6841 0.0041 19 7 1.7877 -4.9180 0.0031 20 6 2.1710 -3.6152 0.0019 21 6 1.4699 -2.4063 0.0005 22 1 -0.3633 -0.0001 1.0277 23 1 -0.3633 0.8899 -0.5138 24 1 -0.3633 -0.8900 -0.5138 25 1 1.6084 2.0284 0.5139 26 1 3.1500 1.1385 0.5139 27 1 4.0308 4.4437 -0.8503 28 1 4.0923 -0.2683 0.0015 29 1 5.3391 -2.3830 0.0030 30 1 2.8182 -6.7639 0.0058 31 1 0.3899 -2.4056 -0.0003 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258966670.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:51 Heat of formation + Delta-G solvation = 60.735603 kcal Electronic energy + Delta-G solvation = -15426.232418 eV Core-core repulsion = 12900.609429 eV Total energy + Delta-G solvation = -2525.622989 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.74373 -39.39520 -36.16191 -34.63915 -33.81838 -30.99450 -29.88588 -29.26445 -26.65626 -24.47025 -23.56729 -22.36543 -21.40562 -18.93920 -18.60314 -17.76136 -17.32836 -16.64617 -15.99041 -15.79436 -15.21595 -14.92937 -14.81536 -14.23621 -13.94637 -13.48566 -13.28544 -13.04180 -12.76838 -12.69858 -12.60484 -12.24873 -11.82573 -11.64246 -11.51773 -10.78687 -10.60938 -10.12718 -9.03663 -8.32171 -7.73208 -6.33998 0.17798 0.88447 1.38261 1.40287 1.52426 2.07882 2.24639 2.37245 2.62103 3.08900 3.09970 3.60455 3.92272 4.30169 4.42054 4.53034 4.57370 4.66728 4.72352 4.79810 4.90102 5.01112 5.16379 5.31092 5.46580 5.58494 5.67828 5.70670 5.90645 6.11099 6.51779 6.73414 6.85408 6.91436 7.11984 7.38019 8.86254 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.036017 B = 0.006565 C = 0.006079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.219742 B = 4263.723445 C = 4604.949640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.630 5.630 3 C 0.266 3.734 4 C -0.541 4.541 5 H 0.048 0.952 6 C 0.015 3.985 7 N -0.925 5.925 8 Si 0.960 3.040 9 H -0.273 1.273 10 H -0.276 1.276 11 H -0.276 1.276 12 C 0.215 3.785 13 C -0.173 4.173 14 C -0.062 4.062 15 C -0.025 4.025 16 N -0.588 5.588 17 H 0.439 0.561 18 C 0.279 3.721 19 N -0.556 5.556 20 C 0.072 3.928 21 C -0.200 4.200 22 H 0.052 0.948 23 H 0.060 0.940 24 H 0.070 0.930 25 H 0.012 0.988 26 H 0.018 0.982 27 H 0.267 0.733 28 H 0.119 0.881 29 H 0.147 0.853 30 H 0.266 0.734 31 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.862 -15.798 1.332 15.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.339 5.339 3 C 0.144 3.856 4 C -0.579 4.579 5 H 0.066 0.934 6 C -0.184 4.184 7 N -0.565 5.565 8 Si 0.785 3.215 9 H -0.198 1.198 10 H -0.201 1.201 11 H -0.201 1.201 12 C 0.109 3.891 13 C -0.196 4.196 14 C -0.083 4.083 15 C -0.134 4.134 16 N -0.202 5.202 17 H 0.280 0.720 18 C -0.008 4.008 19 N -0.279 5.279 20 C -0.046 4.046 21 C -0.226 4.226 22 H 0.070 0.930 23 H 0.079 0.921 24 H 0.089 0.911 25 H 0.030 0.970 26 H 0.036 0.964 27 H 0.076 0.924 28 H 0.137 0.863 29 H 0.164 0.836 30 H 0.281 0.719 31 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.973 -15.638 1.384 15.729 hybrid contribution 1.292 0.977 -0.777 1.797 sum 2.265 -14.661 0.607 14.847 Atomic orbital electron populations 1.21570 0.79674 1.02289 1.00871 1.46928 1.05426 1.03403 1.78157 1.18833 0.91294 0.79955 0.95473 1.21818 1.36218 1.06523 0.93382 0.93373 1.25724 0.95132 0.96264 1.01269 1.70036 1.39063 1.14807 1.32635 0.85481 0.78066 0.78080 0.79874 1.19762 1.20129 1.20118 1.17725 0.91471 0.85841 0.94104 1.20740 0.92662 0.98377 1.07796 1.19847 0.99893 0.88032 1.00563 1.18747 0.94929 0.86567 1.13176 1.42981 1.10993 1.03402 1.62858 0.71958 1.26272 0.79171 1.00308 0.95052 1.70378 1.31171 1.00564 1.25813 1.18835 0.91043 0.91879 1.02839 1.19452 0.99104 0.88227 1.15863 0.93001 0.92136 0.91146 0.97029 0.96386 0.92380 0.86272 0.83565 0.71870 0.85949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.70 10.18 127.77 1.30 5.00 16 2 N -0.63 -28.47 3.00 -726.53 -2.18 -30.65 16 3 C 0.27 13.89 4.91 85.63 0.42 14.31 16 4 C -0.54 -30.23 9.39 25.60 0.24 -29.99 16 5 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 6 C 0.02 0.86 5.46 84.65 0.46 1.32 16 7 N -0.93 -53.61 13.29 21.44 0.28 -53.32 16 8 Si 0.96 43.82 29.54 68.60 2.03 45.85 16 9 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 10 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 11 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 12 C 0.21 9.22 6.55 38.11 0.25 9.47 16 13 C -0.17 -7.12 9.19 22.43 0.21 -6.91 16 14 C -0.06 -2.06 10.06 22.29 0.22 -1.84 16 15 C -0.03 -0.79 7.30 38.81 0.28 -0.51 16 16 N -0.59 -12.02 6.24 -191.01 -1.19 -13.21 16 17 H 0.44 5.03 8.96 -92.71 -0.83 4.20 16 18 C 0.28 5.64 12.97 180.07 2.33 7.97 16 19 N -0.56 -17.72 11.27 -192.07 -2.17 -19.89 16 20 C 0.07 2.64 7.22 39.44 0.28 2.93 16 21 C -0.20 -7.94 9.25 22.62 0.21 -7.73 16 22 H 0.05 1.73 8.14 -2.39 -0.02 1.72 16 23 H 0.06 2.28 8.07 -2.39 -0.02 2.27 16 24 H 0.07 2.39 6.18 -2.39 -0.01 2.37 16 25 H 0.01 0.64 8.07 -2.39 -0.02 0.62 16 26 H 0.02 1.00 6.18 -2.38 -0.01 0.98 16 27 H 0.27 14.52 8.31 -92.70 -0.77 13.75 16 28 H 0.12 5.38 6.11 -2.91 -0.02 5.36 16 29 H 0.15 3.80 8.06 -2.91 -0.02 3.78 16 30 H 0.27 1.87 8.06 -2.91 -0.02 1.85 16 31 H 0.12 4.65 6.11 -2.91 -0.02 4.63 16 Total: -1.00 -70.92 267.19 3.32 -67.60 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: 0.33 Total: 9.61 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: 6.22 Total: -5.98 kcal Atomic # 7 Polarization: -111.82 SS G_CDS: -5.25 Total: -117.07 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -70.92 3.32 -67.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258966670.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.335 kcal (2) G-P(sol) polarization free energy of solvation -70.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds