Wall clock time and date at job start Mon Mar 30 2020 03:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38422 * 122.53614 * 2 1 4 4 C 1.33390 * 114.91870 * 179.97438 * 3 2 1 5 5 S 1.75890 * 109.59395 * 359.97438 * 4 3 2 6 6 C 1.33383 * 122.53781 * 179.97438 * 2 1 3 7 7 S 1.76199 * 125.20691 * 0.06499 * 6 2 1 8 8 O 1.42100 * 106.40461 * 203.51937 * 7 6 2 9 9 O 1.42101 * 106.40026 * 336.43963 * 7 6 2 10 10 C 1.76191 * 107.21952 * 89.97688 * 7 6 2 11 11 H 1.07999 * 120.00203 * 0.02562 * 10 7 6 12 12 C 1.37876 * 120.00199 * 179.97438 * 10 7 6 13 13 N 1.31513 * 119.99999 * 0.02562 * 12 10 7 14 14 Si 1.86804 * 120.00484 * 180.02562 * 12 10 7 15 15 H 1.48505 * 109.47068 * 89.99987 * 14 12 10 16 16 H 1.48491 * 109.47391 * 210.00214 * 14 12 10 17 17 H 1.48499 * 109.46829 * 330.00446 * 14 12 10 18 18 H 1.08995 * 109.47031 * 270.02672 * 1 2 3 19 19 H 1.09001 * 109.46930 * 30.02429 * 1 2 3 20 20 H 1.08996 * 109.46768 * 150.02516 * 1 2 3 21 21 H 1.07999 * 122.54698 * 359.95314 * 3 2 1 22 22 H 1.07998 * 125.20728 * 180.02562 * 4 3 2 23 23 H 0.96998 * 120.00761 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2515 1.1670 0.0000 4 6 3.5737 0.9901 0.0005 5 16 3.9387 -0.7305 0.0018 6 6 2.2245 -1.1245 0.0005 7 16 1.5571 -2.7552 -0.0004 8 8 2.5614 -3.6001 0.5444 9 8 0.2482 -2.6534 0.5433 10 6 1.3606 -3.2374 -1.6836 11 1 1.6392 -2.5585 -2.4759 12 6 0.8520 -4.4819 -1.9893 13 7 0.5131 -5.3090 -1.0246 14 14 0.6443 -4.9935 -3.7739 15 1 1.8852 -5.6589 -4.2458 16 1 -0.4973 -5.9362 -3.8890 17 1 0.3799 -3.7921 -4.6057 18 1 -0.3633 0.0005 1.0276 19 1 -0.3633 0.8898 -0.5142 20 1 -0.3633 -0.8902 -0.5134 21 1 1.7965 2.1464 -0.0007 22 1 4.3078 1.7822 0.0010 23 1 0.1550 -6.1844 -1.2396 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259150557.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:06 Heat of formation + Delta-G solvation = -87.224767 kcal Electronic energy + Delta-G solvation = -12382.073025 eV Core-core repulsion = 10026.553214 eV Total energy + Delta-G solvation = -2355.519812 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 232.001 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.26551 -37.33018 -36.14300 -35.20813 -31.93311 -28.73436 -28.26353 -24.12455 -21.30634 -20.18430 -19.03234 -18.54348 -17.28502 -16.44164 -15.96070 -15.87045 -15.35229 -14.85672 -14.14516 -13.97943 -13.36354 -13.34543 -13.06572 -12.98918 -12.89270 -12.45971 -12.29833 -12.27068 -11.81231 -11.57102 -11.26027 -10.94205 -10.12989 -9.38147 -8.78447 -7.52940 -0.37922 0.13441 0.56090 1.00112 1.34316 1.35341 1.51724 1.58231 2.21157 2.56150 3.40613 3.75695 3.91732 4.17506 4.31767 4.61483 4.68939 4.82060 4.96693 5.12228 5.22773 5.38067 5.55139 5.84346 6.73035 8.19257 Molecular weight = 232.00amu Principal moments of inertia in cm(-1) A = 0.035810 B = 0.010467 C = 0.010291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.712911 B = 2674.433197 C = 2720.232750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.023 3.977 3 C -0.164 4.164 4 C -0.158 4.158 5 S 0.157 5.843 6 C -0.796 4.796 7 S 2.619 3.381 8 O -1.029 7.029 9 O -1.006 7.006 10 C -1.021 5.021 11 H 0.118 0.882 12 C 0.071 3.929 13 N -0.890 5.890 14 Si 0.993 3.007 15 H -0.254 1.254 16 H -0.258 1.258 17 H -0.246 1.246 18 H 0.087 0.913 19 H 0.110 0.890 20 H 0.063 0.937 21 H 0.189 0.811 22 H 0.218 0.782 23 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.265 12.712 -2.498 13.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.007 3.993 3 C -0.194 4.194 4 C -0.295 4.295 5 S 0.423 5.577 6 C -0.998 4.998 7 S 2.805 3.195 8 O -1.026 7.026 9 O -1.004 7.004 10 C -1.155 5.155 11 H 0.136 0.864 12 C -0.142 4.142 13 N -0.521 5.521 14 Si 0.810 3.190 15 H -0.178 1.178 16 H -0.182 1.182 17 H -0.169 1.169 18 H 0.105 0.895 19 H 0.129 0.871 20 H 0.082 0.918 21 H 0.206 0.794 22 H 0.234 0.766 23 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.412 11.247 -1.625 12.190 hybrid contribution -1.143 0.513 -0.937 1.564 sum 3.269 11.760 -2.562 12.472 Atomic orbital electron populations 1.21065 0.88467 1.04693 1.04296 1.19235 0.98392 0.91023 0.90647 1.20604 0.93022 0.99730 1.06023 1.26596 1.00811 0.99087 1.02985 1.84051 1.01005 1.01615 1.71078 1.35450 1.07956 1.26326 1.30092 0.99934 0.72089 0.70404 0.77086 1.93275 1.61953 1.65653 1.81710 1.93286 1.39271 1.86427 1.81368 1.30473 1.57848 1.10716 1.16469 0.86370 1.26066 0.88483 0.93690 1.05960 1.69984 1.35661 1.09779 1.36660 0.85097 0.79620 0.79519 0.74755 1.17779 1.18188 1.16925 0.89472 0.87146 0.91768 0.79440 0.76568 0.88858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.36 8.99 71.24 0.64 -3.72 14 2 C 0.02 0.84 5.80 -20.92 -0.12 0.72 14 3 C -0.16 -4.30 9.98 21.22 0.21 -4.09 14 4 C -0.16 -3.88 11.23 66.72 0.75 -3.13 14 5 S 0.16 5.62 23.22 -56.49 -1.31 4.31 14 6 C -0.80 -35.32 6.41 66.72 0.43 -34.89 14 7 S 2.62 148.13 4.49 -56.49 -0.25 147.88 14 8 O -1.03 -64.54 17.79 -128.00 -2.28 -66.81 14 9 O -1.01 -59.97 15.10 -128.00 -1.93 -61.91 14 10 C -1.02 -57.86 9.58 67.73 0.65 -57.21 14 11 H 0.12 6.10 7.81 -2.91 -0.02 6.08 14 12 C 0.07 3.99 5.46 84.65 0.46 4.45 14 13 N -0.89 -53.38 13.19 21.45 0.28 -53.09 14 14 Si 0.99 41.32 29.54 68.60 2.03 43.35 14 15 H -0.25 -9.99 7.11 99.48 0.71 -9.28 14 16 H -0.26 -9.97 7.11 99.48 0.71 -9.27 14 17 H -0.25 -9.54 7.11 99.48 0.71 -8.83 14 18 H 0.09 2.90 8.14 -2.39 -0.02 2.88 14 19 H 0.11 2.71 8.13 -2.39 -0.02 2.69 14 20 H 0.06 2.68 6.22 -2.39 -0.01 2.67 14 21 H 0.19 3.20 8.06 -2.91 -0.02 3.18 14 22 H 0.22 3.04 8.06 -2.91 -0.02 3.02 14 23 H 0.30 16.09 8.31 -92.71 -0.77 15.32 14 Total: -1.00 -76.48 236.82 0.78 -75.70 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: 1.23 Total: 8.45 kcal Atomic # 6 Polarization: -100.89 SS G_CDS: 3.02 Total: -97.87 kcal Atomic # 7 Polarization: -53.38 SS G_CDS: 0.28 Total: -53.09 kcal Atomic # 8 Polarization: -124.51 SS G_CDS: -4.21 Total: -128.72 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Atomic # 16 Polarization: 153.76 SS G_CDS: -1.57 Total: 152.19 kcal Total: -76.48 0.78 -75.70 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259150557.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.524 kcal (2) G-P(sol) polarization free energy of solvation -76.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds