Wall clock time and date at job start Mon Mar 30 2020 03:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36489 * 125.49131 * 2 1 4 4 C 1.34583 * 108.56233 * 179.72014 * 3 2 1 5 5 C 1.41862 * 107.33967 * 0.43221 * 4 3 2 6 6 C 1.48209 * 126.47806 * 179.82777 * 5 4 3 7 7 C 1.38658 * 125.96555 * 359.95367 * 6 5 4 8 8 N 1.36160 * 106.90040 * 180.11565 * 7 6 5 9 9 C 1.46509 * 126.39665 * 179.90850 * 8 7 6 10 10 C 1.37591 * 107.21216 * 359.64427 * 8 7 6 11 11 C 1.39886 * 125.69897 * 180.22601 * 10 8 7 12 12 H 1.07995 * 119.99787 * 354.04495 * 11 10 8 13 13 C 1.40106 * 119.99923 * 174.04922 * 11 10 8 14 14 N 1.30762 * 119.99939 * 6.02083 * 13 11 10 15 15 Si 1.86795 * 119.99765 * 186.02475 * 13 11 10 16 16 H 1.48501 * 109.47081 * 94.98489 * 15 13 11 17 17 H 1.48504 * 109.46966 * 214.97845 * 15 13 11 18 18 H 1.48493 * 109.47516 * 334.98146 * 15 13 11 19 19 N 1.32896 * 108.60780 * 0.22841 * 10 8 7 20 20 C 1.36078 * 125.49297 * 179.97438 * 2 1 3 21 21 H 1.09004 * 109.47031 * 270.00351 * 1 2 3 22 22 H 1.09000 * 109.47245 * 29.99927 * 1 2 3 23 23 H 1.09000 * 109.47122 * 150.00405 * 1 2 3 24 24 H 1.07999 * 125.71543 * 0.02562 * 3 2 1 25 25 H 1.07995 * 126.32720 * 180.26409 * 4 3 2 26 26 H 1.07997 * 126.55150 * 0.02562 * 7 6 5 27 27 H 1.09004 * 109.46866 * 269.68596 * 9 8 7 28 28 H 1.08993 * 109.46939 * 149.68994 * 9 8 7 29 29 H 1.08994 * 109.46989 * 29.68376 * 9 8 7 30 30 H 0.96997 * 119.99550 * 179.97438 * 14 13 11 31 31 H 1.08007 * 125.97969 * 0.02562 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2574 1.1113 0.0000 4 6 3.5449 0.7194 0.0062 5 6 3.5552 -0.6992 0.0001 6 6 4.7532 -1.5717 0.0001 7 6 6.0721 -1.1439 0.0052 8 7 6.8506 -2.2611 0.0005 9 6 8.3151 -2.3001 0.0015 10 6 6.0050 -3.3465 0.0008 11 6 6.3996 -4.6886 0.0013 12 1 7.4443 -4.9442 -0.0955 13 6 5.4393 -5.7010 0.1274 14 7 4.1670 -5.3992 0.1261 15 14 5.9767 -7.4819 0.2974 16 1 6.0348 -7.8462 1.7359 17 1 5.0021 -8.3614 -0.3969 18 1 7.3200 -7.6540 -0.3115 19 7 4.7508 -2.9070 0.0005 20 6 2.2551 -1.1079 0.0005 21 1 -0.3633 0.0001 1.0277 22 1 -0.3634 0.8900 -0.5138 23 1 -0.3633 -0.8900 -0.5138 24 1 1.9095 2.1337 0.0004 25 1 4.4103 1.3655 0.0119 26 1 6.4163 -0.1203 0.0103 27 1 8.6789 -2.3106 -1.0260 28 1 8.6542 -3.1991 0.5161 29 1 8.7017 -1.4198 0.5148 30 1 3.5022 -6.1002 0.2130 31 1 1.9119 -2.1320 0.0006 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259375550.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:37 Heat of formation + Delta-G solvation = 87.157676 kcal Electronic energy + Delta-G solvation = -15356.924128 eV Core-core repulsion = 12832.446886 eV Total energy + Delta-G solvation = -2524.477242 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.92801 -41.27975 -35.26714 -34.59753 -33.26241 -30.63124 -29.52502 -27.65532 -27.50771 -25.68005 -22.44664 -21.66798 -20.42528 -19.83412 -18.53462 -17.91771 -16.72699 -16.19678 -16.00113 -15.72072 -14.95718 -14.64227 -14.38305 -13.76745 -13.54055 -13.53012 -13.35116 -13.05170 -12.90503 -12.78606 -12.72368 -12.64512 -12.21093 -11.82097 -11.08801 -10.19559 -9.71286 -9.40709 -9.05823 -8.28568 -8.23332 -6.19736 1.21490 1.43329 1.44141 1.59209 1.74796 2.25661 2.26245 2.30086 2.78197 3.13015 3.76912 4.11354 4.26366 4.31952 4.41257 4.52162 4.60617 4.61080 4.70114 4.74244 4.77295 4.86723 5.16069 5.30463 5.38295 5.71040 5.80789 6.11746 6.26714 6.31046 6.48031 6.71391 6.79695 7.06077 7.46207 8.36189 8.68221 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.028009 B = 0.007584 C = 0.005997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.442987 B = 3691.181751 C = 4668.028029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.454 5.454 3 C -0.006 4.006 4 C -0.214 4.214 5 C -0.100 4.100 6 C 0.036 3.964 7 C -0.153 4.153 8 N -0.512 5.512 9 C 0.093 3.907 10 C 0.332 3.668 11 C -0.493 4.493 12 H 0.089 0.911 13 C 0.031 3.969 14 N -0.793 5.793 15 Si 0.994 3.006 16 H -0.267 1.267 17 H -0.273 1.273 18 H -0.252 1.252 19 N -0.545 5.545 20 C -0.020 4.020 21 H 0.081 0.919 22 H 0.112 0.888 23 H 0.081 0.919 24 H 0.205 0.795 25 H 0.142 0.858 26 H 0.170 0.830 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.273 0.727 31 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.925 8.527 0.163 9.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.130 5.130 3 C -0.135 4.135 4 C -0.239 4.239 5 C -0.108 4.108 6 C -0.096 4.096 7 C -0.284 4.284 8 N -0.200 5.200 9 C -0.050 4.050 10 C 0.086 3.914 11 C -0.533 4.533 12 H 0.107 0.893 13 C -0.188 4.188 14 N -0.419 5.419 15 Si 0.814 3.186 16 H -0.192 1.192 17 H -0.198 1.198 18 H -0.176 1.176 19 N -0.267 5.267 20 C -0.152 4.152 21 H 0.100 0.900 22 H 0.130 0.870 23 H 0.100 0.900 24 H 0.222 0.778 25 H 0.160 0.840 26 H 0.187 0.813 27 H 0.083 0.917 28 H 0.095 0.905 29 H 0.109 0.891 30 H 0.083 0.917 31 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.079 8.038 0.161 9.016 hybrid contribution 0.992 -0.422 0.062 1.080 sum -3.087 7.616 0.223 8.221 Atomic orbital electron populations 1.22266 0.74891 1.05594 1.04208 1.44081 1.07550 1.05083 1.56293 1.22199 0.89393 0.92505 1.09446 1.20988 0.97573 0.92679 1.12694 1.17825 0.90262 0.93188 1.09489 1.19633 0.91202 0.91377 1.07357 1.22534 0.91005 0.91389 1.23517 1.45490 1.07163 1.06116 1.61252 1.21760 0.76876 1.03853 1.02475 1.20599 0.83773 0.89312 0.97672 1.18468 0.95466 0.87505 1.51821 0.89334 1.26736 0.94157 1.05290 0.92605 1.70224 1.02087 1.35382 1.34188 0.85043 0.79221 0.75385 0.78936 1.19210 1.19799 1.17580 1.71236 1.19235 1.07599 1.28605 1.21673 0.90483 0.91399 1.11648 0.90013 0.86980 0.89995 0.77827 0.83978 0.81278 0.91720 0.90541 0.89066 0.91701 0.84026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.40 11.10 127.77 1.42 2.82 16 2 N -0.45 -14.54 3.14 -546.93 -1.72 -16.26 16 3 C -0.01 -0.18 11.40 83.13 0.95 0.77 16 4 C -0.21 -8.03 10.63 22.33 0.24 -7.79 16 5 C -0.10 -4.81 6.12 -20.19 -0.12 -4.93 16 6 C 0.04 2.04 7.02 41.64 0.29 2.33 16 7 C -0.15 -7.66 11.42 84.12 0.96 -6.70 16 8 N -0.51 -25.98 3.20 -542.29 -1.73 -27.71 16 9 C 0.09 3.44 10.91 127.77 1.39 4.83 16 10 C 0.33 19.91 7.41 133.57 0.99 20.90 16 11 C -0.49 -28.28 8.94 23.12 0.21 -28.08 16 12 H 0.09 4.62 7.21 -2.91 -0.02 4.60 16 13 C 0.03 1.68 5.49 85.31 0.47 2.15 16 14 N -0.79 -47.05 11.90 21.86 0.26 -46.79 16 15 Si 0.99 40.85 29.57 68.60 2.03 42.88 16 16 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 17 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 18 H -0.25 -9.71 7.11 99.48 0.71 -9.01 16 19 N -0.55 -34.34 9.40 -182.44 -1.71 -36.06 16 20 C -0.02 -0.90 11.38 83.58 0.95 0.05 16 21 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 22 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 23 H 0.08 1.60 8.14 -2.39 -0.02 1.59 16 24 H 0.20 3.83 8.06 -2.91 -0.02 3.81 16 25 H 0.14 4.72 8.06 -2.91 -0.02 4.70 16 26 H 0.17 7.07 8.06 -2.91 -0.02 7.05 16 27 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.08 2.75 7.40 -2.39 -0.02 2.74 16 29 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 30 H 0.27 14.73 8.29 -92.71 -0.77 13.96 16 31 H 0.14 6.77 8.06 -2.91 -0.02 6.74 16 Total: -1.00 -79.73 276.18 5.99 -73.74 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: 1.12 Total: 23.83 kcal Atomic # 6 Polarization: -21.38 SS G_CDS: 7.74 Total: -13.64 kcal Atomic # 7 Polarization: -121.91 SS G_CDS: -4.91 Total: -126.82 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.88 kcal Total: -79.73 5.99 -73.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259375550.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.900 kcal (2) G-P(sol) polarization free energy of solvation -79.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds