Wall clock time and date at job start Mon Mar 30 2020 02:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.32136 * 118.85461 * 2 1 4 4 C 1.32313 * 121.48798 * 179.97438 * 3 2 1 5 5 C 1.38912 * 118.73729 * 0.02562 * 4 3 2 6 6 C 1.41111 * 118.14785 * 359.97438 * 5 4 3 7 7 N 1.31523 * 118.86042 * 179.97438 * 2 1 3 8 8 C 1.45927 * 105.91824 * 179.97438 * 6 5 4 9 9 C 1.50693 * 126.47116 * 180.02562 * 8 6 5 10 10 C 1.50694 * 109.47516 * 84.99787 * 9 8 6 11 11 H 1.07997 * 120.00219 * 359.97438 * 10 9 8 12 12 C 1.37883 * 120.00476 * 179.97438 * 10 9 8 13 13 N 1.31518 * 119.99684 * 0.02562 * 12 10 9 14 14 Si 1.86793 * 120.00339 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47340 * 0.02562 * 14 12 10 16 16 H 1.48505 * 109.47106 * 119.99900 * 14 12 10 17 17 H 1.48500 * 109.47333 * 239.99972 * 14 12 10 18 18 C 1.34581 * 107.05388 * 359.97438 * 8 6 5 19 19 N 1.36485 * 109.97576 * 0.02562 * 18 8 6 20 20 C 1.46508 * 125.08286 * 179.73826 * 19 18 8 21 21 H 1.09001 * 109.47184 * 89.99861 * 1 2 3 22 22 H 1.08999 * 109.46988 * 209.99155 * 1 2 3 23 23 H 1.09001 * 109.47115 * 329.99940 * 1 2 3 24 24 H 1.08005 * 120.62557 * 180.02562 * 4 3 2 25 25 H 1.09002 * 109.47444 * 205.00023 * 9 8 6 26 26 H 1.09008 * 109.47145 * 324.99581 * 9 8 6 27 27 H 0.96993 * 120.00166 * 180.02562 * 13 12 10 28 28 H 1.07996 * 125.01194 * 180.02562 * 18 8 6 29 29 H 1.08996 * 109.47179 * 90.02093 * 20 19 18 30 30 H 1.08999 * 109.46551 * 210.02387 * 20 19 18 31 31 H 1.08997 * 109.46672 * 330.01986 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1447 1.1573 0.0000 4 6 3.4664 1.2181 0.0005 5 6 4.1896 0.0320 0.0005 6 6 3.4738 -1.1840 0.0005 7 7 2.1419 -1.1519 0.0005 8 6 4.4801 -2.2408 -0.0001 9 6 4.2203 -3.7252 -0.0009 10 6 4.0116 -4.1979 -1.4164 11 1 4.0616 -3.4939 -2.2339 12 6 3.7567 -5.5294 -1.6682 13 7 3.6953 -6.3868 -0.6728 14 14 3.4972 -6.1153 -3.4228 15 1 3.6156 -4.9630 -4.3521 16 1 4.5251 -7.1319 -3.7623 17 1 2.1454 -6.7168 -3.5491 18 6 5.6841 -1.6393 -0.0010 19 7 5.5279 -0.2834 -0.0005 20 6 6.6225 0.6903 0.0043 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8901 0.5137 23 1 -0.3633 0.8900 0.5138 24 1 3.9734 2.1718 0.0009 25 1 5.0751 -4.2439 0.4331 26 1 3.3285 -3.9382 0.5886 27 1 3.5164 -7.3235 -0.8498 28 1 6.6337 -2.1537 -0.0021 29 1 6.8975 0.9329 -1.0221 30 1 6.3007 1.5961 0.5181 31 1 7.4837 0.2662 0.5206 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259578686.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:51 Heat of formation + Delta-G solvation = 77.327961 kcal Electronic energy + Delta-G solvation = -15451.898211 eV Core-core repulsion = 12926.994721 eV Total energy + Delta-G solvation = -2524.903490 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.44305 -38.51788 -34.13623 -32.85726 -32.04117 -30.97389 -28.69542 -27.41820 -25.18279 -23.72107 -22.71923 -21.35151 -19.13127 -17.38296 -16.40210 -16.23205 -15.71569 -15.38869 -14.41829 -14.22895 -14.02036 -13.12856 -12.75086 -12.60695 -12.47546 -12.24952 -12.02035 -11.87219 -11.33320 -11.06288 -10.83181 -10.62196 -10.45915 -10.40795 -9.72198 -9.33214 -8.57803 -8.32114 -8.17320 -7.26481 -5.94103 -3.96313 1.29862 1.64786 2.99268 3.19114 3.34774 3.42434 3.48005 4.35572 4.44224 4.52625 4.54123 4.79477 4.91042 5.00436 5.16811 5.38097 5.40264 5.50516 5.63463 5.89796 5.93854 6.08381 6.26877 6.43256 6.89067 6.98317 7.23403 7.50863 7.60390 7.69913 7.88866 8.01628 8.44069 8.74486 9.07069 9.66028 11.15513 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.023248 B = 0.008273 C = 0.006728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.136254 B = 3383.528044 C = 4160.454308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.265 3.735 3 N -0.512 5.512 4 C 0.146 3.854 5 C -0.020 4.020 6 C 0.139 3.861 7 N -0.457 5.457 8 C -0.097 4.097 9 C 0.083 3.917 10 C -0.501 4.501 11 H 0.053 0.947 12 C 0.057 3.943 13 N -0.896 5.896 14 Si 0.892 3.108 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.283 1.283 18 C 0.043 3.957 19 N -0.479 5.479 20 C 0.083 3.917 21 H 0.076 0.924 22 H 0.081 0.919 23 H 0.076 0.924 24 H 0.155 0.845 25 H 0.029 0.971 26 H 0.035 0.965 27 H 0.260 0.740 28 H 0.176 0.824 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.419 14.288 2.248 14.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.004 4.004 3 N -0.226 5.226 4 C -0.030 4.030 5 C -0.132 4.132 6 C -0.003 4.003 7 N -0.170 5.170 8 C -0.103 4.103 9 C 0.045 3.955 10 C -0.540 4.540 11 H 0.071 0.929 12 C -0.143 4.143 13 N -0.535 5.535 14 Si 0.720 3.280 15 H -0.199 1.199 16 H -0.211 1.211 17 H -0.209 1.209 18 C -0.083 4.083 19 N -0.164 5.164 20 C -0.059 4.059 21 H 0.095 0.905 22 H 0.100 0.900 23 H 0.095 0.905 24 H 0.172 0.828 25 H 0.047 0.953 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.193 0.807 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.626 14.206 2.284 14.626 hybrid contribution 0.960 -0.307 -1.063 1.465 sum 3.585 13.899 1.220 14.405 Atomic orbital electron populations 1.20370 0.86282 1.03286 1.03158 1.22850 0.97673 0.82970 0.96927 1.68076 1.08296 1.30420 1.15840 1.21935 0.89077 0.95087 0.96912 1.19910 0.85833 0.98525 1.08942 1.20359 0.89070 0.92132 0.98721 1.67715 1.08297 1.29370 1.11636 1.21176 0.88014 0.97406 1.03738 1.17750 0.97888 0.82173 0.97657 1.21069 1.47947 0.92908 0.92031 0.92887 1.24970 0.95541 0.96823 0.96994 1.69960 1.49930 1.03046 1.30592 0.86525 0.77779 0.78601 0.85049 1.19905 1.21070 1.20947 1.21848 0.99915 0.80642 1.05913 1.43439 1.03283 1.06125 1.63530 1.21893 0.89064 0.92187 1.02769 0.90528 0.90009 0.90509 0.82755 0.95310 0.94715 0.93034 0.80684 0.91471 0.90511 0.89823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.06 10.30 36.01 0.37 -0.69 16 2 C 0.27 5.06 7.64 -157.13 -1.20 3.86 16 3 N -0.51 -9.04 10.30 -10.64 -0.11 -9.15 16 4 C 0.15 2.33 11.31 -17.09 -0.19 2.13 16 5 C -0.02 -0.36 6.84 -83.99 -0.57 -0.94 16 6 C 0.14 3.10 7.55 -83.09 -0.63 2.47 16 7 N -0.46 -10.34 10.39 -7.58 -0.08 -10.42 16 8 C -0.10 -2.18 5.50 -102.84 -0.57 -2.75 16 9 C 0.08 2.20 5.50 -29.04 -0.16 2.04 16 10 C -0.50 -14.50 9.09 -34.44 -0.31 -14.82 16 11 H 0.05 1.55 7.74 -52.49 -0.41 1.15 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 13 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 14 Si 0.89 22.20 29.54 -169.99 -5.02 17.18 16 15 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 17 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 18 C 0.04 0.77 11.20 -16.77 -0.19 0.58 16 19 N -0.48 -7.42 3.17 -121.79 -0.39 -7.80 16 20 C 0.08 0.78 11.05 59.85 0.66 1.44 16 21 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 22 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 23 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.16 1.78 8.06 -52.48 -0.42 1.36 16 25 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.03 1.01 8.14 -51.92 -0.42 0.59 16 27 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 28 H 0.18 2.59 8.06 -52.49 -0.42 2.17 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.62 8.13 -51.93 -0.42 0.20 16 LS Contribution 276.72 15.07 4.17 4.17 Total: -1.00 -34.46 276.72 -7.34 -41.80 By element: Atomic # 1 Polarization: -0.69 SS G_CDS: -3.77 Total: -4.46 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: -2.89 Total: -5.08 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: 0.16 Total: -53.62 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -34.46 -7.34 -41.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259578686.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.128 kcal (2) G-P(sol) polarization free energy of solvation -34.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds