Wall clock time and date at job start Mon Mar 30 2020 02:53:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50704 * 1
3 3 N 1.32136 * 118.85461 * 2 1
4 4 C 1.32313 * 121.48798 * 179.97438 * 3 2 1
5 5 C 1.38912 * 118.73729 * 0.02562 * 4 3 2
6 6 C 1.41111 * 118.14785 * 359.97438 * 5 4 3
7 7 N 1.31523 * 118.86042 * 179.97438 * 2 1 3
8 8 C 1.45927 * 105.91824 * 179.97438 * 6 5 4
9 9 C 1.50693 * 126.47116 * 180.02562 * 8 6 5
10 10 C 1.50694 * 109.47516 * 84.99787 * 9 8 6
11 11 H 1.07997 * 120.00219 * 359.97438 * 10 9 8
12 12 C 1.37883 * 120.00476 * 179.97438 * 10 9 8
13 13 N 1.31518 * 119.99684 * 0.02562 * 12 10 9
14 14 Si 1.86793 * 120.00339 * 179.97438 * 12 10 9
15 15 H 1.48501 * 109.47340 * 0.02562 * 14 12 10
16 16 H 1.48505 * 109.47106 * 119.99900 * 14 12 10
17 17 H 1.48500 * 109.47333 * 239.99972 * 14 12 10
18 18 C 1.34581 * 107.05388 * 359.97438 * 8 6 5
19 19 N 1.36485 * 109.97576 * 0.02562 * 18 8 6
20 20 C 1.46508 * 125.08286 * 179.73826 * 19 18 8
21 21 H 1.09001 * 109.47184 * 89.99861 * 1 2 3
22 22 H 1.08999 * 109.46988 * 209.99155 * 1 2 3
23 23 H 1.09001 * 109.47115 * 329.99940 * 1 2 3
24 24 H 1.08005 * 120.62557 * 180.02562 * 4 3 2
25 25 H 1.09002 * 109.47444 * 205.00023 * 9 8 6
26 26 H 1.09008 * 109.47145 * 324.99581 * 9 8 6
27 27 H 0.96993 * 120.00166 * 180.02562 * 13 12 10
28 28 H 1.07996 * 125.01194 * 180.02562 * 18 8 6
29 29 H 1.08996 * 109.47179 * 90.02093 * 20 19 18
30 30 H 1.08999 * 109.46551 * 210.02387 * 20 19 18
31 31 H 1.08997 * 109.46672 * 330.01986 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.1447 1.1573 0.0000
4 6 3.4664 1.2181 0.0005
5 6 4.1896 0.0320 0.0005
6 6 3.4738 -1.1840 0.0005
7 7 2.1419 -1.1519 0.0005
8 6 4.4801 -2.2408 -0.0001
9 6 4.2203 -3.7252 -0.0009
10 6 4.0116 -4.1979 -1.4164
11 1 4.0616 -3.4939 -2.2339
12 6 3.7567 -5.5294 -1.6682
13 7 3.6953 -6.3868 -0.6728
14 14 3.4972 -6.1153 -3.4228
15 1 3.6156 -4.9630 -4.3521
16 1 4.5251 -7.1319 -3.7623
17 1 2.1454 -6.7168 -3.5491
18 6 5.6841 -1.6393 -0.0010
19 7 5.5279 -0.2834 -0.0005
20 6 6.6225 0.6903 0.0043
21 1 -0.3633 0.0000 -1.0277
22 1 -0.3633 -0.8901 0.5137
23 1 -0.3633 0.8900 0.5138
24 1 3.9734 2.1718 0.0009
25 1 5.0751 -4.2439 0.4331
26 1 3.3285 -3.9382 0.5886
27 1 3.5164 -7.3235 -0.8498
28 1 6.6337 -2.1537 -0.0021
29 1 6.8975 0.9329 -1.0221
30 1 6.3007 1.5961 0.5181
31 1 7.4837 0.2662 0.5206
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000259578686.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:53:51
Heat of formation + Delta-G solvation = 77.327961 kcal
Electronic energy + Delta-G solvation = -15451.898211 eV
Core-core repulsion = 12926.994721 eV
Total energy + Delta-G solvation = -2524.903490 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 231.107 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-41.44305 -38.51788 -34.13623 -32.85726 -32.04117 -30.97389 -28.69542 -27.41820
-25.18279 -23.72107 -22.71923 -21.35151 -19.13127 -17.38296 -16.40210 -16.23205
-15.71569 -15.38869 -14.41829 -14.22895 -14.02036 -13.12856 -12.75086 -12.60695
-12.47546 -12.24952 -12.02035 -11.87219 -11.33320 -11.06288 -10.83181 -10.62196
-10.45915 -10.40795 -9.72198 -9.33214 -8.57803 -8.32114 -8.17320 -7.26481
-5.94103 -3.96313 1.29862 1.64786 2.99268 3.19114 3.34774 3.42434
3.48005 4.35572 4.44224 4.52625 4.54123 4.79477 4.91042 5.00436
5.16811 5.38097 5.40264 5.50516 5.63463 5.89796 5.93854 6.08381
6.26877 6.43256 6.89067 6.98317 7.23403 7.50863 7.60390 7.69913
7.88866 8.01628 8.44069 8.74486 9.07069 9.66028 11.15513
Molecular weight = 231.11amu
Principal moments of inertia in cm(-1)
A = 0.023248 B = 0.008273 C = 0.006728
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1204.136254 B = 3383.528044 C = 4160.454308
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.072 4.072
2 C 0.265 3.735
3 N -0.512 5.512
4 C 0.146 3.854
5 C -0.020 4.020
6 C 0.139 3.861
7 N -0.457 5.457
8 C -0.097 4.097
9 C 0.083 3.917
10 C -0.501 4.501
11 H 0.053 0.947
12 C 0.057 3.943
13 N -0.896 5.896
14 Si 0.892 3.108
15 H -0.274 1.274
16 H -0.284 1.284
17 H -0.283 1.283
18 C 0.043 3.957
19 N -0.479 5.479
20 C 0.083 3.917
21 H 0.076 0.924
22 H 0.081 0.919
23 H 0.076 0.924
24 H 0.155 0.845
25 H 0.029 0.971
26 H 0.035 0.965
27 H 0.260 0.740
28 H 0.176 0.824
29 H 0.067 0.933
30 H 0.076 0.924
31 H 0.083 0.917
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.419 14.288 2.248 14.862
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C -0.004 4.004
3 N -0.226 5.226
4 C -0.030 4.030
5 C -0.132 4.132
6 C -0.003 4.003
7 N -0.170 5.170
8 C -0.103 4.103
9 C 0.045 3.955
10 C -0.540 4.540
11 H 0.071 0.929
12 C -0.143 4.143
13 N -0.535 5.535
14 Si 0.720 3.280
15 H -0.199 1.199
16 H -0.211 1.211
17 H -0.209 1.209
18 C -0.083 4.083
19 N -0.164 5.164
20 C -0.059 4.059
21 H 0.095 0.905
22 H 0.100 0.900
23 H 0.095 0.905
24 H 0.172 0.828
25 H 0.047 0.953
26 H 0.053 0.947
27 H 0.070 0.930
28 H 0.193 0.807
29 H 0.085 0.915
30 H 0.095 0.905
31 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges 2.626 14.206 2.284 14.626
hybrid contribution 0.960 -0.307 -1.063 1.465
sum 3.585 13.899 1.220 14.405
Atomic orbital electron populations
1.20370 0.86282 1.03286 1.03158 1.22850 0.97673 0.82970 0.96927
1.68076 1.08296 1.30420 1.15840 1.21935 0.89077 0.95087 0.96912
1.19910 0.85833 0.98525 1.08942 1.20359 0.89070 0.92132 0.98721
1.67715 1.08297 1.29370 1.11636 1.21176 0.88014 0.97406 1.03738
1.17750 0.97888 0.82173 0.97657 1.21069 1.47947 0.92908 0.92031
0.92887 1.24970 0.95541 0.96823 0.96994 1.69960 1.49930 1.03046
1.30592 0.86525 0.77779 0.78601 0.85049 1.19905 1.21070 1.20947
1.21848 0.99915 0.80642 1.05913 1.43439 1.03283 1.06125 1.63530
1.21893 0.89064 0.92187 1.02769 0.90528 0.90009 0.90509 0.82755
0.95310 0.94715 0.93034 0.80684 0.91471 0.90511 0.89823
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -1.06 10.30 36.01 0.37 -0.69 16
2 C 0.27 5.06 7.64 -157.13 -1.20 3.86 16
3 N -0.51 -9.04 10.30 -10.64 -0.11 -9.15 16
4 C 0.15 2.33 11.31 -17.09 -0.19 2.13 16
5 C -0.02 -0.36 6.84 -83.99 -0.57 -0.94 16
6 C 0.14 3.10 7.55 -83.09 -0.63 2.47 16
7 N -0.46 -10.34 10.39 -7.58 -0.08 -10.42 16
8 C -0.10 -2.18 5.50 -102.84 -0.57 -2.75 16
9 C 0.08 2.20 5.50 -29.04 -0.16 2.04 16
10 C -0.50 -14.50 9.09 -34.44 -0.31 -14.82 16
11 H 0.05 1.55 7.74 -52.49 -0.41 1.15 16
12 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16
13 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16
14 Si 0.89 22.20 29.54 -169.99 -5.02 17.18 16
15 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16
16 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16
17 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16
18 C 0.04 0.77 11.20 -16.77 -0.19 0.58 16
19 N -0.48 -7.42 3.17 -121.79 -0.39 -7.80 16
20 C 0.08 0.78 11.05 59.85 0.66 1.44 16
21 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16
22 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16
23 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16
24 H 0.16 1.78 8.06 -52.48 -0.42 1.36 16
25 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16
26 H 0.03 1.01 8.14 -51.92 -0.42 0.59 16
27 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16
28 H 0.18 2.59 8.06 -52.49 -0.42 2.17 16
29 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16
30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16
31 H 0.08 0.62 8.13 -51.93 -0.42 0.20 16
LS Contribution 276.72 15.07 4.17 4.17
Total: -1.00 -34.46 276.72 -7.34 -41.80
By element:
Atomic # 1 Polarization: -0.69 SS G_CDS: -3.77 Total: -4.46 kcal
Atomic # 6 Polarization: -2.19 SS G_CDS: -2.89 Total: -5.08 kcal
Atomic # 7 Polarization: -53.78 SS G_CDS: 0.16 Total: -53.62 kcal
Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal
Total LS contribution 4.17 Total: 4.17 kcal
Total: -34.46 -7.34 -41.80 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259578686.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 119.128 kcal
(2) G-P(sol) polarization free energy of solvation -34.457 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.670 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.342 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.800 kcal
(6) G-S(sol) free energy of system = (1) + (5) 77.328 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds