Wall clock time and date at job start Mon Mar 30 2020 02:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.32136 * 118.85461 * 2 1 4 4 C 1.32313 * 121.48798 * 179.97438 * 3 2 1 5 5 C 1.38912 * 118.73729 * 0.02562 * 4 3 2 6 6 C 1.41111 * 118.14785 * 359.97438 * 5 4 3 7 7 N 1.31523 * 118.86042 * 179.97438 * 2 1 3 8 8 C 1.45927 * 105.91824 * 179.97438 * 6 5 4 9 9 C 1.50693 * 126.47116 * 180.02562 * 8 6 5 10 10 C 1.50694 * 109.47516 * 84.99787 * 9 8 6 11 11 H 1.07997 * 120.00219 * 359.97438 * 10 9 8 12 12 C 1.37883 * 120.00476 * 179.97438 * 10 9 8 13 13 N 1.31518 * 119.99684 * 0.02562 * 12 10 9 14 14 Si 1.86793 * 120.00339 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47340 * 0.02562 * 14 12 10 16 16 H 1.48505 * 109.47106 * 119.99900 * 14 12 10 17 17 H 1.48500 * 109.47333 * 239.99972 * 14 12 10 18 18 C 1.34581 * 107.05388 * 359.97438 * 8 6 5 19 19 N 1.36485 * 109.97576 * 0.02562 * 18 8 6 20 20 C 1.46508 * 125.08286 * 179.73826 * 19 18 8 21 21 H 1.09001 * 109.47184 * 89.99861 * 1 2 3 22 22 H 1.08999 * 109.46988 * 209.99155 * 1 2 3 23 23 H 1.09001 * 109.47115 * 329.99940 * 1 2 3 24 24 H 1.08005 * 120.62557 * 180.02562 * 4 3 2 25 25 H 1.09002 * 109.47444 * 205.00023 * 9 8 6 26 26 H 1.09008 * 109.47145 * 324.99581 * 9 8 6 27 27 H 0.96993 * 120.00166 * 180.02562 * 13 12 10 28 28 H 1.07996 * 125.01194 * 180.02562 * 18 8 6 29 29 H 1.08996 * 109.47179 * 90.02093 * 20 19 18 30 30 H 1.08999 * 109.46551 * 210.02387 * 20 19 18 31 31 H 1.08997 * 109.46672 * 330.01986 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1447 1.1573 0.0000 4 6 3.4664 1.2181 0.0005 5 6 4.1896 0.0320 0.0005 6 6 3.4738 -1.1840 0.0005 7 7 2.1419 -1.1519 0.0005 8 6 4.4801 -2.2408 -0.0001 9 6 4.2203 -3.7252 -0.0009 10 6 4.0116 -4.1979 -1.4164 11 1 4.0616 -3.4939 -2.2339 12 6 3.7567 -5.5294 -1.6682 13 7 3.6953 -6.3868 -0.6728 14 14 3.4972 -6.1153 -3.4228 15 1 3.6156 -4.9630 -4.3521 16 1 4.5251 -7.1319 -3.7623 17 1 2.1454 -6.7168 -3.5491 18 6 5.6841 -1.6393 -0.0010 19 7 5.5279 -0.2834 -0.0005 20 6 6.6225 0.6903 0.0043 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8901 0.5137 23 1 -0.3633 0.8900 0.5138 24 1 3.9734 2.1718 0.0009 25 1 5.0751 -4.2439 0.4331 26 1 3.3285 -3.9382 0.5886 27 1 3.5164 -7.3235 -0.8498 28 1 6.6337 -2.1537 -0.0021 29 1 6.8975 0.9329 -1.0221 30 1 6.3007 1.5961 0.5181 31 1 7.4837 0.2662 0.5206 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259578686.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:51 Heat of formation + Delta-G solvation = 54.345594 kcal Electronic energy + Delta-G solvation = -15452.894802 eV Core-core repulsion = 12926.994721 eV Total energy + Delta-G solvation = -2525.900080 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.81571 -39.87094 -35.83425 -34.65550 -33.38813 -32.53664 -30.18340 -28.87748 -26.66561 -25.11933 -24.55433 -22.70174 -20.62058 -18.80837 -18.43327 -17.71255 -17.03342 -16.70714 -16.38514 -15.37555 -15.33293 -14.52499 -14.41619 -14.03950 -13.95043 -13.51462 -13.33837 -13.20124 -12.97319 -12.70951 -12.49100 -12.40281 -12.16958 -11.87630 -11.72618 -11.45768 -10.58350 -10.00713 -9.56149 -8.77853 -8.13573 -6.27748 -0.07104 0.25293 1.36069 1.38416 1.50349 1.70929 1.80077 2.42287 2.94098 3.12554 3.17377 3.24284 3.59817 3.71563 3.96645 4.25617 4.41996 4.53456 4.70063 4.76758 4.77172 4.79222 4.90338 5.04697 5.30966 5.45157 5.50091 5.62925 5.77840 6.02263 6.19104 6.26082 6.33229 6.82680 7.34179 7.39431 8.93216 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.023248 B = 0.008273 C = 0.006728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.136254 B = 3383.528044 C = 4160.454308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.256 3.744 3 N -0.517 5.517 4 C 0.168 3.832 5 C -0.027 4.027 6 C 0.091 3.909 7 N -0.515 5.515 8 C -0.166 4.166 9 C 0.099 3.901 10 C -0.517 4.517 11 H 0.042 0.958 12 C 0.004 3.996 13 N -0.930 5.930 14 Si 0.962 3.038 15 H -0.271 1.271 16 H -0.268 1.268 17 H -0.280 1.280 18 C 0.081 3.919 19 N -0.461 5.461 20 C 0.070 3.930 21 H 0.087 0.913 22 H 0.075 0.925 23 H 0.103 0.897 24 H 0.210 0.790 25 H 0.016 0.984 26 H -0.014 1.014 27 H 0.265 0.735 28 H 0.208 0.792 29 H 0.085 0.915 30 H 0.104 0.896 31 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.996 16.976 1.303 17.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.013 4.013 3 N -0.232 5.232 4 C -0.008 4.008 5 C -0.140 4.140 6 C -0.048 4.048 7 N -0.230 5.230 8 C -0.173 4.173 9 C 0.062 3.938 10 C -0.555 4.555 11 H 0.061 0.939 12 C -0.194 4.194 13 N -0.571 5.571 14 Si 0.787 3.213 15 H -0.196 1.196 16 H -0.194 1.194 17 H -0.206 1.206 18 C -0.049 4.049 19 N -0.143 5.143 20 C -0.069 4.069 21 H 0.106 0.894 22 H 0.094 0.906 23 H 0.121 0.879 24 H 0.227 0.773 25 H 0.034 0.966 26 H 0.005 0.995 27 H 0.073 0.927 28 H 0.225 0.775 29 H 0.104 0.896 30 H 0.123 0.877 31 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.231 16.928 1.343 17.500 hybrid contribution 0.536 -1.019 -0.716 1.356 sum 4.767 15.909 0.627 16.620 Atomic orbital electron populations 1.20490 0.83990 1.04268 1.04119 1.23560 0.99283 0.82720 0.95722 1.68225 1.09207 1.29316 1.16421 1.22821 0.88496 0.96277 0.93227 1.20017 0.86718 0.97719 1.09555 1.20573 0.89592 0.93902 1.00731 1.67679 1.09401 1.31485 1.14429 1.20834 0.90852 0.95598 1.09979 1.17292 0.95012 0.85842 0.95659 1.21337 1.48073 0.93134 0.92939 0.93948 1.25872 0.95063 0.96922 1.01522 1.70080 1.50609 1.03484 1.32889 0.85447 0.78049 0.78239 0.79576 1.19579 1.19351 1.20557 1.22136 0.99316 0.81912 1.01525 1.43792 1.03800 1.06083 1.60651 1.22434 0.87800 0.91821 1.04826 0.89445 0.90593 0.87883 0.77308 0.96626 0.99520 0.92655 0.77541 0.89636 0.87741 0.87277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.05 10.30 71.24 0.73 -1.31 16 2 C 0.26 9.83 7.64 138.73 1.06 10.89 16 3 N -0.52 -17.27 10.30 -187.57 -1.93 -19.20 16 4 C 0.17 4.82 11.31 84.78 0.96 5.78 16 5 C -0.03 -0.94 6.84 39.12 0.27 -0.67 16 6 C 0.09 4.20 7.55 41.63 0.31 4.51 16 7 N -0.52 -24.39 10.39 -177.91 -1.85 -26.24 16 8 C -0.17 -7.79 5.50 -18.71 -0.10 -7.89 16 9 C 0.10 5.67 5.50 29.10 0.16 5.83 16 10 C -0.52 -31.31 9.09 25.60 0.23 -31.08 16 11 H 0.04 2.59 7.74 -2.91 -0.02 2.56 16 12 C 0.00 0.23 5.46 84.66 0.46 0.69 16 13 N -0.93 -58.10 13.29 21.45 0.28 -57.82 16 14 Si 0.96 46.47 29.54 68.60 2.03 48.50 16 15 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 16 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 17 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 18 C 0.08 2.80 11.20 83.13 0.93 3.73 16 19 N -0.46 -12.87 3.17 -539.23 -1.71 -14.58 16 20 C 0.07 0.95 11.05 127.77 1.41 2.36 16 21 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 22 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 23 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 24 H 0.21 3.54 8.06 -2.91 -0.02 3.52 16 25 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 26 H -0.01 -0.87 8.14 -2.38 -0.02 -0.89 16 27 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 28 H 0.21 5.62 8.06 -2.91 -0.02 5.60 16 29 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.11 1.01 8.13 -2.39 -0.02 0.99 16 Total: -1.00 -81.04 276.72 4.38 -76.66 By element: Atomic # 1 Polarization: -1.29 SS G_CDS: 1.13 Total: -0.17 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: 6.43 Total: -7.15 kcal Atomic # 7 Polarization: -112.64 SS G_CDS: -5.20 Total: -117.84 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.50 kcal Total: -81.04 4.38 -76.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259578686.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.009 kcal (2) G-P(sol) polarization free energy of solvation -81.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds