Wall clock time and date at job start Mon Mar 30 2020 02:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50703 * 109.46801 * 2 1 4 4 N 1.30804 * 126.25219 * 90.02615 * 3 2 1 5 5 N 1.28675 * 110.29124 * 179.73462 * 4 3 2 6 6 C 1.32304 * 109.48986 * 0.02562 * 5 4 3 7 7 C 1.40816 * 133.47453 * 180.02562 * 6 5 4 8 8 C 1.36021 * 119.23097 * 179.97438 * 7 6 5 9 9 C 1.50698 * 120.12739 * 179.97438 * 8 7 6 10 10 C 1.50704 * 109.46708 * 89.99406 * 9 8 7 11 11 H 1.07997 * 120.00499 * 0.02562 * 10 9 8 12 12 C 1.37885 * 119.99348 * 179.97438 * 10 9 8 13 13 N 1.31506 * 120.00040 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99735 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47095 * 90.00031 * 14 12 10 16 16 H 1.48496 * 109.46933 * 210.00389 * 14 12 10 17 17 H 1.48507 * 109.47000 * 330.00339 * 14 12 10 18 18 C 1.40549 * 119.74403 * 359.97438 * 8 7 6 19 19 C 1.34957 * 120.37003 * 0.02562 * 18 8 7 20 20 N 1.36064 * 126.24434 * 269.71504 * 3 2 1 21 21 H 1.08996 * 109.47300 * 59.99837 * 1 2 3 22 22 H 1.08996 * 109.46743 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47028 * 299.99882 * 1 2 3 24 24 H 1.08996 * 109.47293 * 240.00156 * 2 1 3 25 25 H 1.09000 * 109.47318 * 119.99670 * 2 1 3 26 26 H 1.08000 * 120.38210 * 359.92766 * 7 6 5 27 27 H 1.08997 * 109.47195 * 209.99078 * 9 8 7 28 28 H 1.08999 * 109.46734 * 329.99990 * 9 8 7 29 29 H 0.97008 * 119.99715 * 180.02562 * 13 12 10 30 30 H 1.08002 * 119.81198 * 180.02562 * 18 8 7 31 31 H 1.07993 * 119.74943 * 179.97438 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2906 2.1500 1.0548 5 7 2.7080 3.3146 0.7010 6 6 2.7377 3.3904 -0.6195 7 6 3.1035 4.4062 -1.5236 8 6 3.0210 4.1671 -2.8601 9 6 3.4067 5.2399 -3.8457 10 6 4.8732 5.1192 -4.1710 11 1 5.4665 4.3431 -3.7106 12 6 5.4573 5.9992 -5.0574 13 7 4.7348 6.9440 -5.6185 14 14 7.2750 5.8492 -5.4614 15 1 7.4501 4.9464 -6.6273 16 1 7.8218 7.1907 -5.7876 17 1 7.9979 5.2913 -4.2903 18 6 2.5746 2.9157 -3.3184 19 6 2.2274 1.9516 -2.4401 20 7 2.3056 2.1775 -1.0973 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 3.4448 5.3641 -1.1601 27 1 2.8214 5.1230 -4.7577 28 1 3.2105 6.2201 -3.4110 29 1 5.1457 7.5628 -6.2424 30 1 2.5090 2.7245 -4.3793 31 1 1.8853 0.9938 -2.8033 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259764579.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:09 Heat of formation + Delta-G solvation = 85.247151 kcal Electronic energy + Delta-G solvation = -15280.859311 eV Core-core repulsion = 12756.299222 eV Total energy + Delta-G solvation = -2524.560088 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.13825 -38.01675 -34.85949 -33.84300 -32.39686 -30.67291 -29.37622 -27.33249 -24.27382 -24.01861 -23.25960 -21.07974 -20.81320 -17.57217 -16.59156 -16.49170 -16.15221 -15.20375 -14.80035 -14.64537 -14.07176 -13.82060 -12.90993 -12.53816 -12.20535 -12.16485 -11.91331 -11.65323 -11.42213 -11.31973 -11.24182 -10.81289 -10.70205 -10.47238 -10.14196 -9.83907 -9.51907 -8.99213 -8.56898 -7.52060 -6.19287 -4.24842 1.09085 1.55149 2.63954 3.01719 3.22347 3.29846 3.33811 3.84805 4.27434 4.33887 4.56669 4.75478 4.91002 5.05940 5.09269 5.16743 5.31125 5.36431 5.57519 5.60603 5.78497 5.96092 6.02210 6.16700 6.39991 6.47490 6.68786 6.88967 7.23390 7.32779 7.49681 7.75085 8.09296 8.79520 8.90506 9.40528 10.90323 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.046735 B = 0.005665 C = 0.005542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.984921 B = 4941.792925 C = 5050.905375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.026 4.026 3 C 0.116 3.884 4 N -0.256 5.256 5 N -0.313 5.313 6 C 0.214 3.786 7 C -0.111 4.111 8 C -0.004 4.004 9 C 0.050 3.950 10 C -0.520 4.520 11 H 0.058 0.942 12 C 0.063 3.937 13 N -0.890 5.890 14 Si 0.897 3.103 15 H -0.279 1.279 16 H -0.284 1.284 17 H -0.272 1.272 18 C -0.108 4.108 19 C 0.037 3.963 20 N -0.388 5.388 21 H 0.053 0.947 22 H 0.066 0.934 23 H 0.063 0.937 24 H 0.078 0.922 25 H 0.096 0.904 26 H 0.153 0.847 27 H 0.037 0.963 28 H 0.038 0.962 29 H 0.265 0.735 30 H 0.155 0.845 31 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.021 -12.154 4.001 14.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.066 4.066 3 C -0.146 4.146 4 N -0.096 5.096 5 N -0.159 5.159 6 C -0.034 4.034 7 C -0.132 4.132 8 C -0.011 4.011 9 C 0.013 3.987 10 C -0.558 4.558 11 H 0.077 0.923 12 C -0.140 4.140 13 N -0.528 5.528 14 Si 0.725 3.275 15 H -0.205 1.205 16 H -0.210 1.210 17 H -0.197 1.197 18 C -0.130 4.130 19 C -0.085 4.085 20 N -0.068 5.068 21 H 0.072 0.928 22 H 0.085 0.915 23 H 0.082 0.918 24 H 0.097 0.903 25 H 0.115 0.885 26 H 0.171 0.829 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.172 0.828 31 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -6.895 -11.676 5.519 14.640 hybrid contribution 0.949 -0.351 -1.704 1.982 sum -5.946 -12.027 3.814 13.948 Atomic orbital electron populations 1.21770 0.93962 1.02191 1.02691 1.19852 0.96301 0.86322 1.04117 1.24566 1.10365 0.98209 0.81449 1.74049 1.12720 0.98982 1.23860 1.74898 1.22585 1.12066 1.06390 1.22465 1.01487 0.87022 0.92477 1.20145 1.04410 0.98097 0.90586 1.20761 0.89848 0.95819 0.94691 1.18415 0.97106 0.91105 0.92062 1.20973 0.93029 1.15535 1.26231 0.92348 1.24984 0.98392 0.94956 0.95659 1.69938 1.36160 1.17374 1.29358 0.86500 0.84680 0.77549 0.78815 1.20497 1.20986 1.19716 1.21125 0.98708 0.92683 1.00457 1.21498 1.05363 1.01755 0.79859 1.43573 1.43238 1.13146 1.06857 0.92761 0.91505 0.91829 0.90347 0.88511 0.82949 0.94498 0.94384 0.92574 0.82757 0.82105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.90 37.16 0.37 -0.96 16 2 C -0.03 -0.27 6.46 -27.88 -0.18 -0.45 16 3 C 0.12 1.85 7.39 -154.22 -1.14 0.71 16 4 N -0.26 -4.90 12.19 32.94 0.40 -4.50 16 5 N -0.31 -6.57 12.31 31.14 0.38 -6.18 16 6 C 0.21 4.21 7.92 -156.06 -1.24 2.97 16 7 C -0.11 -2.18 9.75 -39.40 -0.38 -2.56 16 8 C 0.00 -0.09 5.07 -104.55 -0.53 -0.62 16 9 C 0.05 1.16 5.11 -29.03 -0.15 1.01 16 10 C -0.52 -13.51 9.09 -34.44 -0.31 -13.82 16 11 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 13 N -0.89 -24.84 13.29 55.43 0.74 -24.10 16 14 Si 0.90 20.58 29.54 -169.99 -5.02 15.55 16 15 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 18 C -0.11 -1.72 9.67 -39.88 -0.39 -2.11 16 19 C 0.04 0.52 10.91 -16.69 -0.18 0.34 16 20 N -0.39 -6.53 2.95 -59.73 -0.18 -6.71 16 21 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 22 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 26 H 0.15 2.94 8.06 -52.49 -0.42 2.52 16 27 H 0.04 0.87 8.09 -51.93 -0.42 0.45 16 28 H 0.04 0.94 8.08 -51.93 -0.42 0.52 16 29 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 30 H 0.15 2.12 8.06 -52.49 -0.42 1.70 16 31 H 0.16 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 275.42 15.07 4.15 4.15 Total: -1.00 -30.85 275.42 -7.52 -38.37 By element: Atomic # 1 Polarization: 1.11 SS G_CDS: -3.76 Total: -2.66 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: -4.23 Total: -13.93 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: 1.34 Total: -41.49 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.85 -7.52 -38.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259764579.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.616 kcal (2) G-P(sol) polarization free energy of solvation -30.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds