Wall clock time and date at job start Mon Mar 30 2020 03:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36637 * 125.09689 * 2 1 4 4 C 1.34356 * 109.94550 * 179.97438 * 3 2 1 5 5 C 1.46423 * 107.08036 * 359.97438 * 4 3 2 6 6 N 1.32998 * 133.75678 * 180.02562 * 5 4 3 7 7 C 1.31542 * 121.40167 * 179.97438 * 6 5 4 8 8 C 1.38676 * 121.27316 * 0.02562 * 7 6 5 9 9 C 1.50706 * 120.15780 * 179.97438 * 8 7 6 10 10 H 1.09001 * 109.46953 * 159.99874 * 9 8 7 11 11 N 1.46893 * 109.47176 * 40.00414 * 9 8 7 12 12 C 1.50697 * 109.47178 * 279.99737 * 9 8 7 13 13 H 1.07998 * 120.00039 * 0.02562 * 12 9 8 14 14 C 1.37880 * 119.99815 * 180.02562 * 12 9 8 15 15 N 1.31508 * 119.99915 * 0.02562 * 14 12 9 16 16 Si 1.86805 * 119.99777 * 180.02562 * 14 12 9 17 17 H 1.48501 * 109.47152 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.46821 * 119.99784 * 16 14 12 19 19 H 1.48494 * 109.47204 * 240.00116 * 16 14 12 20 20 C 1.38302 * 119.67834 * 0.22917 * 8 7 6 21 21 C 1.37631 * 125.09520 * 179.97438 * 2 1 3 22 22 H 1.08995 * 109.46852 * 90.03074 * 1 2 3 23 23 H 1.09001 * 109.47174 * 210.02606 * 1 2 3 24 24 H 1.09002 * 109.47166 * 330.02424 * 1 2 3 25 25 H 1.07999 * 125.02246 * 359.95945 * 3 2 1 26 26 H 1.08001 * 126.45842 * 180.02562 * 4 3 2 27 27 H 1.07997 * 119.35911 * 180.02562 * 7 6 5 28 28 H 1.00901 * 111.00080 * 176.04330 * 11 9 8 29 29 H 1.00899 * 110.99958 * 299.99574 * 11 9 8 30 30 H 0.97001 * 119.99839 * 179.97438 * 15 14 12 31 31 H 1.07991 * 120.85841 * 179.72315 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2506 1.1179 0.0000 4 6 3.5474 0.7668 0.0006 5 6 3.5967 -0.6966 0.0016 6 7 4.5878 -1.5836 0.0029 7 6 4.3497 -2.8773 0.0041 8 6 3.0537 -3.3708 0.0035 9 6 2.8099 -4.8580 0.0044 10 1 1.7979 -5.0600 0.3553 11 7 3.7770 -5.5122 0.8957 12 6 2.9730 -5.3946 -1.3944 13 1 3.2281 -4.7257 -2.2030 14 6 2.7965 -6.7394 -1.6417 15 7 2.4853 -7.5538 -0.6572 16 14 2.9993 -7.4047 -3.3755 17 1 3.3484 -6.2920 -4.2949 18 1 4.0837 -8.4190 -3.3927 19 1 1.7278 -8.0318 -3.8170 20 6 1.9862 -2.4916 -0.0031 21 6 2.2563 -1.1261 0.0005 22 1 -0.3633 -0.0006 -1.0276 23 1 -0.3633 -0.8898 0.5142 24 1 -0.3633 0.8902 0.5135 25 1 1.8833 2.1336 -0.0006 26 1 4.3940 1.4375 0.0011 27 1 5.1796 -3.5684 0.0055 28 1 3.5937 -6.5021 0.9639 29 1 4.7234 -5.3398 0.5914 30 1 2.3608 -8.4999 -0.8313 31 1 0.9693 -2.8550 -0.0081 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259861881.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:08 Heat of formation + Delta-G solvation = 68.503336 kcal Electronic energy + Delta-G solvation = -15510.212145 eV Core-core repulsion = 12984.925991 eV Total energy + Delta-G solvation = -2525.286154 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.05614 -37.75455 -34.79270 -32.58327 -31.34240 -30.74648 -28.30215 -26.27478 -25.80033 -22.97055 -22.71619 -20.45135 -19.40010 -17.02320 -16.56696 -15.96283 -15.67481 -15.20812 -14.64469 -13.92230 -13.73317 -13.24030 -13.06688 -12.76964 -12.42522 -12.22677 -12.05053 -11.59866 -11.35051 -11.19063 -10.94278 -10.82710 -10.09776 -10.01463 -9.47084 -8.77895 -8.50694 -7.68302 -7.52669 -7.19834 -6.13254 -4.30694 1.63684 2.07946 3.01921 3.02801 3.19302 3.28401 3.34090 4.28912 4.66718 4.73770 4.83235 5.02282 5.09794 5.20592 5.38994 5.49888 5.61002 5.78962 5.91911 6.19619 6.29259 6.45539 6.60874 6.91229 6.91435 7.08766 7.51286 7.60611 7.62862 7.70655 8.03551 8.61010 8.76221 8.88653 9.08046 9.41771 10.83882 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.035202 B = 0.006828 C = 0.006531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.217397 B = 4099.552782 C = 4286.154425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.490 5.490 3 C 0.048 3.952 4 C -0.191 4.191 5 C 0.064 3.936 6 N -0.460 5.460 7 C 0.106 3.894 8 C -0.051 4.051 9 C 0.247 3.753 10 H 0.048 0.952 11 N -0.849 5.849 12 C -0.545 4.545 13 H 0.057 0.943 14 C 0.068 3.932 15 N -0.893 5.893 16 Si 0.897 3.103 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.283 1.283 20 C -0.101 4.101 21 C 0.051 3.949 22 H 0.066 0.934 23 H 0.080 0.920 24 H 0.079 0.921 25 H 0.167 0.833 26 H 0.146 0.854 27 H 0.154 0.846 28 H 0.357 0.643 29 H 0.313 0.687 30 H 0.266 0.734 31 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.450 12.583 1.248 13.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.175 5.175 3 C -0.078 4.078 4 C -0.218 4.218 5 C -0.068 4.068 6 N -0.168 5.168 7 C -0.061 4.061 8 C -0.055 4.055 9 C 0.136 3.864 10 H 0.066 0.934 11 N -0.380 5.380 12 C -0.584 4.584 13 H 0.075 0.925 14 C -0.135 4.135 15 N -0.532 5.532 16 Si 0.725 3.275 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.209 1.209 20 C -0.131 4.131 21 C -0.056 4.056 22 H 0.084 0.916 23 H 0.099 0.901 24 H 0.097 0.903 25 H 0.185 0.815 26 H 0.164 0.836 27 H 0.171 0.829 28 H 0.174 0.826 29 H 0.123 0.877 30 H 0.076 0.924 31 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.296 13.251 1.873 13.783 hybrid contribution -0.714 -1.308 -1.922 2.432 sum -4.009 11.943 -0.049 12.598 Atomic orbital electron populations 1.21882 0.77571 1.03875 1.02735 1.43571 1.05555 1.04304 1.64059 1.21677 0.90218 0.90999 1.04907 1.21398 0.95718 0.91650 1.12985 1.19939 0.87528 0.93846 1.05524 1.67092 1.35035 1.02529 1.12109 1.22405 0.96358 0.90001 0.97334 1.21168 0.92549 0.98535 0.93265 1.17913 0.93960 0.83292 0.91234 0.93411 1.59512 1.05193 1.19737 1.53536 1.21847 1.48680 0.93276 0.94646 0.92464 1.25008 0.94156 0.96874 0.97472 1.69748 1.47699 1.04466 1.31256 0.86451 0.77832 0.78933 0.84323 1.19698 1.20794 1.20863 1.20270 0.99973 0.88370 1.04444 1.19132 0.91778 0.88798 1.05887 0.91575 0.90150 0.90273 0.81548 0.83621 0.82928 0.82621 0.87729 0.92425 0.85887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.83 11.03 59.85 0.66 1.49 16 2 N -0.49 -7.19 3.17 -121.80 -0.39 -7.58 16 3 C 0.05 0.63 11.28 -16.78 -0.19 0.44 16 4 C -0.19 -2.99 11.08 -37.66 -0.42 -3.41 16 5 C 0.06 1.27 7.52 -83.12 -0.62 0.64 16 6 N -0.46 -9.88 10.42 -9.86 -0.10 -9.99 16 7 C 0.11 2.30 10.44 -17.51 -0.18 2.12 16 8 C -0.05 -1.15 4.91 -104.43 -0.51 -1.66 16 9 C 0.25 6.07 2.95 -70.02 -0.21 5.86 16 10 H 0.05 1.27 8.03 -51.93 -0.42 0.86 16 11 N -0.85 -19.98 9.02 -6.65 -0.06 -20.04 16 12 C -0.54 -14.47 8.71 -34.44 -0.30 -14.77 16 13 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 14 C 0.07 1.79 5.38 -17.82 -0.10 1.69 16 15 N -0.89 -24.12 11.54 55.43 0.64 -23.48 16 16 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 17 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 C -0.10 -2.06 9.73 -39.20 -0.38 -2.44 16 21 C 0.05 0.96 6.82 -83.95 -0.57 0.39 16 22 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.08 0.82 8.12 -51.93 -0.42 0.40 16 24 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.17 1.39 8.06 -52.49 -0.42 0.96 16 26 H 0.15 1.94 8.06 -52.49 -0.42 1.51 16 27 H 0.15 3.14 6.64 -52.49 -0.35 2.79 16 28 H 0.36 8.94 7.08 -39.29 -0.28 8.66 16 29 H 0.31 6.95 7.34 -39.29 -0.29 6.67 16 30 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 31 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 LS Contribution 268.55 15.07 4.05 4.05 Total: -1.00 -30.22 268.55 -7.11 -37.34 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: -3.41 Total: 13.60 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: -2.82 Total: -9.64 kcal Atomic # 7 Polarization: -61.17 SS G_CDS: 0.09 Total: -61.08 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -30.22 -7.11 -37.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259861881.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.841 kcal (2) G-P(sol) polarization free energy of solvation -30.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds