Wall clock time and date at job start Mon Mar 30 2020 03:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36637 * 125.09689 * 2 1 4 4 C 1.34356 * 109.94550 * 179.97438 * 3 2 1 5 5 C 1.46423 * 107.08036 * 359.97438 * 4 3 2 6 6 N 1.32998 * 133.75678 * 180.02562 * 5 4 3 7 7 C 1.31542 * 121.40167 * 179.97438 * 6 5 4 8 8 C 1.38676 * 121.27316 * 0.02562 * 7 6 5 9 9 C 1.50706 * 120.15780 * 179.97438 * 8 7 6 10 10 H 1.09001 * 109.46953 * 159.99874 * 9 8 7 11 11 N 1.46893 * 109.47176 * 40.00414 * 9 8 7 12 12 C 1.50697 * 109.47178 * 279.99737 * 9 8 7 13 13 H 1.07998 * 120.00039 * 0.02562 * 12 9 8 14 14 C 1.37880 * 119.99815 * 180.02562 * 12 9 8 15 15 N 1.31508 * 119.99915 * 0.02562 * 14 12 9 16 16 Si 1.86805 * 119.99777 * 180.02562 * 14 12 9 17 17 H 1.48501 * 109.47152 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.46821 * 119.99784 * 16 14 12 19 19 H 1.48494 * 109.47204 * 240.00116 * 16 14 12 20 20 C 1.38302 * 119.67834 * 0.22917 * 8 7 6 21 21 C 1.37631 * 125.09520 * 179.97438 * 2 1 3 22 22 H 1.08995 * 109.46852 * 90.03074 * 1 2 3 23 23 H 1.09001 * 109.47174 * 210.02606 * 1 2 3 24 24 H 1.09002 * 109.47166 * 330.02424 * 1 2 3 25 25 H 1.07999 * 125.02246 * 359.95945 * 3 2 1 26 26 H 1.08001 * 126.45842 * 180.02562 * 4 3 2 27 27 H 1.07997 * 119.35911 * 180.02562 * 7 6 5 28 28 H 1.00901 * 111.00080 * 176.04330 * 11 9 8 29 29 H 1.00899 * 110.99958 * 299.99574 * 11 9 8 30 30 H 0.97001 * 119.99839 * 179.97438 * 15 14 12 31 31 H 1.07991 * 120.85841 * 179.72315 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2506 1.1179 0.0000 4 6 3.5474 0.7668 0.0006 5 6 3.5967 -0.6966 0.0016 6 7 4.5878 -1.5836 0.0029 7 6 4.3497 -2.8773 0.0041 8 6 3.0537 -3.3708 0.0035 9 6 2.8099 -4.8580 0.0044 10 1 1.7979 -5.0600 0.3553 11 7 3.7770 -5.5122 0.8957 12 6 2.9730 -5.3946 -1.3944 13 1 3.2281 -4.7257 -2.2030 14 6 2.7965 -6.7394 -1.6417 15 7 2.4853 -7.5538 -0.6572 16 14 2.9993 -7.4047 -3.3755 17 1 3.3484 -6.2920 -4.2949 18 1 4.0837 -8.4190 -3.3927 19 1 1.7278 -8.0318 -3.8170 20 6 1.9862 -2.4916 -0.0031 21 6 2.2563 -1.1261 0.0005 22 1 -0.3633 -0.0006 -1.0276 23 1 -0.3633 -0.8898 0.5142 24 1 -0.3633 0.8902 0.5135 25 1 1.8833 2.1336 -0.0006 26 1 4.3940 1.4375 0.0011 27 1 5.1796 -3.5684 0.0055 28 1 3.5937 -6.5021 0.9639 29 1 4.7234 -5.3398 0.5914 30 1 2.3608 -8.4999 -0.8313 31 1 0.9693 -2.8550 -0.0081 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259861881.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:08 Heat of formation + Delta-G solvation = 47.794834 kcal Electronic energy + Delta-G solvation = -15511.110133 eV Core-core repulsion = 12984.925991 eV Total energy + Delta-G solvation = -2526.184142 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.38991 -39.24328 -36.60613 -34.13488 -32.97570 -32.21715 -29.84106 -27.94345 -27.19173 -24.61427 -24.22239 -21.99156 -20.73062 -18.68359 -18.20160 -17.41407 -17.34919 -16.46176 -16.35071 -15.51488 -15.20194 -14.89777 -14.29893 -14.27966 -13.75109 -13.60861 -13.38418 -13.20668 -13.04470 -12.84075 -12.69074 -12.44716 -11.99009 -11.91909 -11.00404 -10.73322 -10.16492 -9.28662 -9.09622 -8.76446 -8.13283 -6.40452 0.18121 0.53347 1.35181 1.38880 1.49785 1.79211 1.90518 2.35809 3.01826 3.10294 3.44542 3.76116 3.94625 4.08264 4.18760 4.39102 4.48297 4.58611 4.62557 4.73586 4.81605 4.88465 5.10559 5.16738 5.50399 5.61861 5.70944 5.78158 6.01056 6.18559 6.43241 6.59948 6.89143 7.09185 7.20784 7.36742 8.80285 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.035202 B = 0.006828 C = 0.006531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.217397 B = 4099.552782 C = 4286.154425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.487 5.487 3 C 0.088 3.912 4 C -0.223 4.223 5 C 0.039 3.961 6 N -0.478 5.478 7 C 0.092 3.908 8 C -0.081 4.081 9 C 0.255 3.745 10 H 0.019 0.981 11 N -0.842 5.842 12 C -0.560 4.560 13 H 0.043 0.957 14 C 0.027 3.973 15 N -0.913 5.913 16 Si 0.958 3.042 17 H -0.277 1.277 18 H -0.275 1.275 19 H -0.277 1.277 20 C -0.103 4.103 21 C 0.037 3.963 22 H 0.078 0.922 23 H 0.074 0.926 24 H 0.121 0.879 25 H 0.228 0.772 26 H 0.166 0.834 27 H 0.151 0.849 28 H 0.348 0.652 29 H 0.320 0.680 30 H 0.269 0.731 31 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.617 15.053 0.729 15.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.171 5.171 3 C -0.039 4.039 4 C -0.248 4.248 5 C -0.094 4.094 6 N -0.186 5.186 7 C -0.075 4.075 8 C -0.085 4.085 9 C 0.145 3.855 10 H 0.037 0.963 11 N -0.372 5.372 12 C -0.599 4.599 13 H 0.061 0.939 14 C -0.173 4.173 15 N -0.552 5.552 16 Si 0.784 3.216 17 H -0.201 1.201 18 H -0.201 1.201 19 H -0.202 1.202 20 C -0.132 4.132 21 C -0.071 4.071 22 H 0.097 0.903 23 H 0.093 0.907 24 H 0.139 0.861 25 H 0.244 0.756 26 H 0.183 0.817 27 H 0.169 0.831 28 H 0.163 0.837 29 H 0.130 0.870 30 H 0.079 0.921 31 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.478 15.728 1.361 16.409 hybrid contribution -0.451 -1.884 -1.728 2.596 sum -4.928 13.844 -0.367 14.700 Atomic orbital electron populations 1.22260 0.74642 1.05772 1.04180 1.43997 1.07365 1.03301 1.62409 1.22602 0.88972 0.92580 0.99784 1.21763 0.98023 0.89544 1.15477 1.20770 0.87799 0.95885 1.04958 1.67086 1.36121 1.02491 1.12924 1.22327 0.96079 0.90527 0.98544 1.20932 0.93649 0.97394 0.96516 1.17658 0.92532 0.85097 0.90260 0.96324 1.59468 1.05499 1.18844 1.53352 1.21989 1.49123 0.93556 0.95245 0.93916 1.25681 0.93793 0.96999 1.00875 1.69832 1.47883 1.04747 1.32744 0.85512 0.77987 0.78078 0.80054 1.20139 1.20059 1.20242 1.20350 0.99767 0.89347 1.03741 1.19110 0.92629 0.89305 1.06101 0.90313 0.90680 0.86105 0.75604 0.81676 0.83140 0.83684 0.87012 0.92112 0.85166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.16 11.03 127.77 1.41 2.57 16 2 N -0.49 -12.59 3.17 -539.26 -1.71 -14.31 16 3 C 0.09 1.84 11.28 83.06 0.94 2.78 16 4 C -0.22 -6.34 11.08 23.51 0.26 -6.08 16 5 C 0.04 1.52 7.52 41.72 0.31 1.84 16 6 N -0.48 -21.00 10.42 -185.10 -1.93 -22.92 16 7 C 0.09 4.15 10.44 84.84 0.89 5.03 16 8 C -0.08 -3.78 4.91 -19.74 -0.10 -3.87 16 9 C 0.26 13.13 2.95 43.43 0.13 13.26 16 10 H 0.02 1.05 8.03 -2.39 -0.02 1.03 16 11 N -0.84 -41.24 9.02 -174.96 -1.58 -42.82 16 12 C -0.56 -30.67 8.71 25.60 0.22 -30.45 16 13 H 0.04 2.41 7.74 -2.91 -0.02 2.39 16 14 C 0.03 1.46 5.38 84.66 0.46 1.92 16 15 N -0.91 -50.09 11.54 21.45 0.25 -49.84 16 16 Si 0.96 43.00 29.54 68.60 2.03 45.02 16 17 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 18 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 19 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 20 C -0.10 -4.26 9.73 22.51 0.22 -4.04 16 21 C 0.04 1.36 6.82 39.08 0.27 1.62 16 22 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 23 H 0.07 1.33 8.12 -2.39 -0.02 1.31 16 24 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.23 2.01 8.06 -2.91 -0.02 1.99 16 26 H 0.17 3.92 8.06 -2.91 -0.02 3.89 16 27 H 0.15 6.57 6.64 -2.91 -0.02 6.55 16 28 H 0.35 18.03 7.08 -89.69 -0.64 17.40 16 29 H 0.32 14.82 7.34 -89.69 -0.66 14.16 16 30 H 0.27 13.97 8.31 -92.71 -0.77 13.20 16 31 H 0.13 5.00 8.06 -2.91 -0.02 4.98 16 Total: -1.00 -67.67 268.55 1.93 -65.74 By element: Atomic # 1 Polarization: 34.69 SS G_CDS: -0.13 Total: 34.55 kcal Atomic # 6 Polarization: -20.43 SS G_CDS: 5.00 Total: -15.42 kcal Atomic # 7 Polarization: -124.92 SS G_CDS: -4.97 Total: -129.89 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Total: -67.67 1.93 -65.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259861881.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.536 kcal (2) G-P(sol) polarization free energy of solvation -67.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds