Wall clock time and date at job start Mon Mar 30 2020 03:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.40275 * 126.75492 * 2 1 4 4 N 1.28651 * 109.42313 * 180.02562 * 3 2 1 5 5 C 1.34784 * 110.32206 * 359.97438 * 4 3 2 6 6 C 1.40136 * 133.16030 * 180.02562 * 5 4 3 7 7 C 1.36419 * 119.79754 * 179.97438 * 6 5 4 8 8 C 1.50697 * 119.62177 * 180.02562 * 7 6 5 9 9 C 1.52997 * 109.47466 * 89.99760 * 8 7 6 10 10 C 1.50701 * 109.47212 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47094 * 90.00289 * 14 12 10 16 16 H 1.48505 * 109.47195 * 210.00171 * 14 12 10 17 17 H 1.48493 * 109.47449 * 330.00136 * 14 12 10 18 18 C 1.38905 * 120.75258 * 0.27329 * 7 6 5 19 19 C 1.36663 * 120.57903 * 359.42000 * 18 7 6 20 20 C 1.37463 * 126.75144 * 180.02562 * 2 1 3 21 21 H 1.09004 * 109.47344 * 90.02596 * 1 2 3 22 22 H 1.09004 * 109.47380 * 210.02557 * 1 2 3 23 23 H 1.09003 * 109.46965 * 330.02615 * 1 2 3 24 24 H 1.07996 * 120.10037 * 359.95436 * 6 5 4 25 25 H 1.09002 * 109.47120 * 329.99513 * 8 7 6 26 26 H 1.08998 * 109.46862 * 210.00315 * 8 7 6 27 27 H 1.09002 * 109.47153 * 59.99773 * 9 8 7 28 28 H 1.09001 * 109.46832 * 299.99964 * 9 8 7 29 29 H 0.97002 * 119.99768 * 179.97438 * 13 12 10 30 30 H 1.07998 * 119.70825 * 179.72891 * 18 7 6 31 31 H 1.08002 * 120.09565 * 180.25464 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3044 1.1239 0.0000 4 7 3.5325 0.7406 -0.0005 5 6 3.6028 -0.6054 -0.0004 6 6 4.6737 -1.5093 -0.0003 7 6 4.4280 -2.8512 0.0004 8 6 5.5825 -3.8198 0.0011 9 6 5.9732 -4.1468 1.4438 10 6 7.1273 -5.1158 1.4444 11 1 7.5411 -5.4634 0.5093 12 6 7.6557 -5.5579 2.6387 13 7 7.1521 -5.1343 3.7774 14 14 9.0867 -6.7585 2.6394 15 1 10.3658 -6.0041 2.6386 16 1 9.0162 -7.6120 3.8527 17 1 9.0158 -7.6139 1.4277 18 6 3.1259 -3.3350 -0.0046 19 6 2.0645 -2.4742 0.0015 20 6 2.2875 -1.1014 -0.0005 21 1 -0.3634 -0.0005 -1.0277 22 1 -0.3634 -0.8898 0.5142 23 1 -0.3633 0.8903 0.5134 24 1 5.6902 -1.1448 -0.0011 25 1 6.4329 -3.3718 -0.5130 26 1 5.2889 -4.7353 -0.5123 27 1 5.1228 -4.5947 1.9578 28 1 6.2668 -3.2311 1.9571 29 1 7.5236 -5.4456 4.6176 30 1 2.9509 -4.4007 -0.0084 31 1 1.0553 -2.8589 0.0017 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259869457.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:37 Heat of formation + Delta-G solvation = 96.580300 kcal Electronic energy + Delta-G solvation = -15013.887228 eV Core-core repulsion = 12489.818582 eV Total energy + Delta-G solvation = -2524.068646 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.87318 -37.91015 -34.63427 -33.75926 -31.85672 -30.34983 -28.89549 -27.42306 -25.14602 -23.50804 -22.13349 -21.02973 -20.33718 -17.30940 -17.06195 -16.28678 -15.98773 -15.24383 -14.48966 -14.06764 -13.87225 -13.60669 -13.23146 -12.70301 -12.59745 -12.04444 -11.95999 -11.75457 -11.52257 -10.98664 -10.93467 -10.67103 -10.49564 -10.44775 -9.86897 -9.58679 -9.12687 -8.53960 -8.35842 -7.90665 -6.00874 -4.04156 0.66331 1.58995 2.17294 2.41319 3.32045 3.38520 3.41201 3.90127 4.26944 4.38736 4.45597 4.80349 4.89118 5.03100 5.13332 5.30066 5.35062 5.40471 5.53173 5.84385 6.03182 6.17297 6.31739 6.49342 6.59540 6.67453 6.86722 6.94194 7.10377 7.66000 7.78424 7.98494 8.16998 8.38476 9.02959 9.60248 11.10131 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.054629 B = 0.004881 C = 0.004783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.427707 B = 5735.566245 C = 5852.801860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.405 5.405 3 N -0.026 5.026 4 N -0.221 5.221 5 C -0.012 4.012 6 C -0.043 4.043 7 C -0.072 4.072 8 C -0.077 4.077 9 C 0.028 3.972 10 C -0.523 4.523 11 H 0.057 0.943 12 C 0.058 3.942 13 N -0.894 5.894 14 Si 0.892 3.108 15 H -0.280 1.280 16 H -0.287 1.287 17 H -0.274 1.274 18 C -0.052 4.052 19 C -0.131 4.131 20 C 0.076 3.924 21 H 0.077 0.923 22 H 0.089 0.911 23 H 0.093 0.907 24 H 0.137 0.863 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.018 0.982 28 H 0.019 0.981 29 H 0.261 0.739 30 H 0.138 0.862 31 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.312 5.724 -7.995 16.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.201 5.201 3 N -0.006 5.006 4 N -0.099 5.099 5 C -0.136 4.136 6 C -0.065 4.065 7 C -0.075 4.075 8 C -0.114 4.114 9 C -0.009 4.009 10 C -0.561 4.561 11 H 0.075 0.925 12 C -0.144 4.144 13 N -0.533 5.533 14 Si 0.720 3.280 15 H -0.206 1.206 16 H -0.213 1.213 17 H -0.198 1.198 18 C -0.074 4.074 19 C -0.153 4.153 20 C -0.044 4.044 21 H 0.095 0.905 22 H 0.107 0.893 23 H 0.111 0.889 24 H 0.155 0.845 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.036 0.964 28 H 0.037 0.963 29 H 0.070 0.930 30 H 0.156 0.844 31 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -13.343 7.281 -7.803 17.087 hybrid contribution 0.432 -1.639 0.238 1.711 sum -12.911 5.643 -7.565 15.993 Atomic orbital electron populations 1.21882 0.73487 1.04825 1.03566 1.50002 1.07368 1.03764 1.58948 1.81545 0.94101 1.07812 1.17112 1.74505 1.11224 1.11257 1.12929 1.19804 0.93465 0.89768 1.10584 1.20123 0.97461 0.90966 0.97990 1.19972 0.95916 0.94033 0.97620 1.20849 0.93086 0.95538 1.01970 1.19108 0.96357 0.96813 0.88653 1.21243 1.16130 1.26398 0.92366 0.92506 1.25018 0.97096 0.96584 0.95658 1.69969 1.41665 1.44391 0.97291 0.86598 0.82819 0.81118 0.77491 1.20641 1.21269 1.19841 1.20906 0.91447 1.00055 0.94999 1.19729 1.00075 0.88214 1.07326 1.19342 0.90904 0.90468 1.03708 0.90457 0.89283 0.88882 0.84502 0.91800 0.91792 0.96378 0.96291 0.92966 0.84433 0.85548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.81 11.54 59.85 0.69 1.50 16 2 N -0.40 -5.55 4.12 -65.48 -0.27 -5.82 16 3 N -0.03 -0.43 13.73 60.35 0.83 0.40 16 4 N -0.22 -4.00 12.36 32.07 0.40 -3.61 16 5 C -0.01 -0.21 7.26 -84.98 -0.62 -0.82 16 6 C -0.04 -0.75 9.67 -39.53 -0.38 -1.14 16 7 C -0.07 -1.24 5.09 -105.03 -0.54 -1.78 16 8 C -0.08 -1.49 5.26 -27.89 -0.15 -1.64 16 9 C 0.03 0.69 4.95 -27.88 -0.14 0.55 16 10 C -0.52 -14.37 9.11 -34.44 -0.31 -14.69 16 11 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 13 N -0.89 -26.63 13.29 55.43 0.74 -25.89 16 14 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 17 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 18 C -0.05 -0.77 9.61 -39.90 -0.38 -1.15 16 19 C -0.13 -1.74 10.01 -39.84 -0.40 -2.14 16 20 C 0.08 1.16 6.94 -84.15 -0.58 0.58 16 21 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 22 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 23 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.14 2.29 8.06 -52.49 -0.42 1.87 16 25 H 0.06 1.20 8.07 -51.93 -0.42 0.78 16 26 H 0.06 1.16 8.08 -51.93 -0.42 0.74 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.14 1.75 8.06 -52.49 -0.42 1.33 16 31 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 276.34 15.07 4.16 4.16 Total: -1.00 -32.34 276.34 -5.83 -38.18 By element: Atomic # 1 Polarization: -0.75 SS G_CDS: -3.76 Total: -4.51 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: -2.91 Total: -19.18 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: 1.69 Total: -34.92 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -32.34 -5.83 -38.18 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259869457.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.756 kcal (2) G-P(sol) polarization free energy of solvation -32.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds