Wall clock time and date at job start Mon Mar 30 2020 03:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.40275 * 126.75492 * 2 1 4 4 N 1.28651 * 109.42313 * 180.02562 * 3 2 1 5 5 C 1.34784 * 110.32206 * 359.97438 * 4 3 2 6 6 C 1.40136 * 133.16030 * 180.02562 * 5 4 3 7 7 C 1.36419 * 119.79754 * 179.97438 * 6 5 4 8 8 C 1.50697 * 119.62177 * 180.02562 * 7 6 5 9 9 C 1.52997 * 109.47466 * 89.99760 * 8 7 6 10 10 C 1.50701 * 109.47212 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47094 * 90.00289 * 14 12 10 16 16 H 1.48505 * 109.47195 * 210.00171 * 14 12 10 17 17 H 1.48493 * 109.47449 * 330.00136 * 14 12 10 18 18 C 1.38905 * 120.75258 * 0.27329 * 7 6 5 19 19 C 1.36663 * 120.57903 * 359.42000 * 18 7 6 20 20 C 1.37463 * 126.75144 * 180.02562 * 2 1 3 21 21 H 1.09004 * 109.47344 * 90.02596 * 1 2 3 22 22 H 1.09004 * 109.47380 * 210.02557 * 1 2 3 23 23 H 1.09003 * 109.46965 * 330.02615 * 1 2 3 24 24 H 1.07996 * 120.10037 * 359.95436 * 6 5 4 25 25 H 1.09002 * 109.47120 * 329.99513 * 8 7 6 26 26 H 1.08998 * 109.46862 * 210.00315 * 8 7 6 27 27 H 1.09002 * 109.47153 * 59.99773 * 9 8 7 28 28 H 1.09001 * 109.46832 * 299.99964 * 9 8 7 29 29 H 0.97002 * 119.99768 * 179.97438 * 13 12 10 30 30 H 1.07998 * 119.70825 * 179.72891 * 18 7 6 31 31 H 1.08002 * 120.09565 * 180.25464 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3044 1.1239 0.0000 4 7 3.5325 0.7406 -0.0005 5 6 3.6028 -0.6054 -0.0004 6 6 4.6737 -1.5093 -0.0003 7 6 4.4280 -2.8512 0.0004 8 6 5.5825 -3.8198 0.0011 9 6 5.9732 -4.1468 1.4438 10 6 7.1273 -5.1158 1.4444 11 1 7.5411 -5.4634 0.5093 12 6 7.6557 -5.5579 2.6387 13 7 7.1521 -5.1343 3.7774 14 14 9.0867 -6.7585 2.6394 15 1 10.3658 -6.0041 2.6386 16 1 9.0162 -7.6120 3.8527 17 1 9.0158 -7.6139 1.4277 18 6 3.1259 -3.3350 -0.0046 19 6 2.0645 -2.4742 0.0015 20 6 2.2875 -1.1014 -0.0005 21 1 -0.3634 -0.0005 -1.0277 22 1 -0.3634 -0.8898 0.5142 23 1 -0.3633 0.8903 0.5134 24 1 5.6902 -1.1448 -0.0011 25 1 6.4329 -3.3718 -0.5130 26 1 5.2889 -4.7353 -0.5123 27 1 5.1228 -4.5947 1.9578 28 1 6.2668 -3.2311 1.9571 29 1 7.5236 -5.4456 4.6176 30 1 2.9509 -4.4007 -0.0084 31 1 1.0553 -2.8589 0.0017 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259869457.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:37 Heat of formation + Delta-G solvation = 76.026758 kcal Electronic energy + Delta-G solvation = -15014.778497 eV Core-core repulsion = 12489.818582 eV Total energy + Delta-G solvation = -2524.959914 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.06114 -39.17601 -35.80681 -35.51386 -33.58636 -31.53463 -30.43219 -28.39770 -26.91328 -24.75983 -23.72977 -22.13389 -21.89905 -18.68212 -18.30703 -18.06826 -17.08039 -16.54125 -16.45104 -15.19783 -15.11657 -14.53099 -14.51354 -14.29438 -13.83935 -13.58824 -13.38206 -13.24352 -12.79277 -12.73813 -12.49228 -12.33608 -11.83594 -11.73943 -11.57673 -11.34930 -11.13162 -10.51461 -9.75622 -9.15203 -8.15627 -6.26834 -0.52599 0.35423 1.19782 1.20087 1.44276 1.45174 1.56142 2.44404 2.66592 3.09239 3.18149 3.51057 3.64503 3.91175 4.14643 4.28851 4.38037 4.47842 4.54734 4.64085 4.79833 4.92297 4.94075 5.05925 5.20356 5.28427 5.52532 5.55836 5.61532 5.82403 5.87049 5.90026 6.27615 6.91061 6.95335 7.42724 8.95862 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.054629 B = 0.004881 C = 0.004783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.427707 B = 5735.566245 C = 5852.801860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.388 5.388 3 N -0.040 5.040 4 N -0.257 5.257 5 C -0.036 4.036 6 C -0.064 4.064 7 C -0.081 4.081 8 C -0.063 4.063 9 C 0.033 3.967 10 C -0.540 4.540 11 H 0.066 0.934 12 C 0.000 4.000 13 N -0.935 5.935 14 Si 0.963 3.037 15 H -0.276 1.276 16 H -0.284 1.284 17 H -0.259 1.259 18 C -0.061 4.061 19 C -0.108 4.108 20 C 0.070 3.930 21 H 0.101 0.899 22 H 0.116 0.884 23 H 0.107 0.893 24 H 0.127 0.873 25 H 0.063 0.937 26 H 0.080 0.920 27 H -0.002 1.002 28 H -0.015 1.015 29 H 0.262 0.738 30 H 0.161 0.839 31 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.094 4.499 -8.966 18.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.185 5.185 3 N -0.019 5.019 4 N -0.135 5.135 5 C -0.161 4.161 6 C -0.086 4.086 7 C -0.084 4.084 8 C -0.100 4.100 9 C -0.004 4.004 10 C -0.578 4.578 11 H 0.084 0.916 12 C -0.198 4.198 13 N -0.576 5.576 14 Si 0.788 3.212 15 H -0.202 1.202 16 H -0.210 1.210 17 H -0.183 1.183 18 C -0.083 4.083 19 C -0.130 4.130 20 C -0.052 4.052 21 H 0.120 0.880 22 H 0.135 0.865 23 H 0.126 0.874 24 H 0.145 0.855 25 H 0.082 0.918 26 H 0.099 0.901 27 H 0.016 0.984 28 H 0.003 0.997 29 H 0.071 0.929 30 H 0.179 0.821 31 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -15.150 6.080 -8.795 18.543 hybrid contribution 0.839 -1.196 0.538 1.557 sum -14.311 4.884 -8.257 17.229 Atomic orbital electron populations 1.22479 0.69888 1.06990 1.05824 1.50446 1.09130 1.02474 1.56462 1.81428 0.94116 1.09045 1.17304 1.74478 1.12265 1.11887 1.14828 1.20014 0.94788 0.89868 1.11462 1.20095 0.97416 0.91509 0.99588 1.19835 0.96519 0.93275 0.98774 1.20581 0.94275 0.96958 0.98207 1.18958 0.95021 0.94597 0.91798 1.21737 1.16756 1.26550 0.92797 0.91612 1.25960 1.00012 0.98538 0.95271 1.70111 1.43445 1.45999 0.98000 0.85475 0.79048 0.78742 0.77950 1.20191 1.21004 1.18305 1.21151 0.90530 1.01557 0.95027 1.20144 1.01838 0.86770 1.04228 1.19645 0.90275 0.91680 1.03600 0.88049 0.86527 0.87442 0.85527 0.91827 0.90124 0.98362 0.99701 0.92920 0.82139 0.80853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.02 11.54 127.77 1.47 2.49 16 2 N -0.39 -9.75 4.12 -361.07 -1.49 -11.24 16 3 N -0.04 -1.28 13.73 37.02 0.51 -0.77 16 4 N -0.26 -9.52 12.36 -52.44 -0.65 -10.17 16 5 C -0.04 -1.28 7.26 39.72 0.29 -0.99 16 6 C -0.06 -2.31 9.67 22.31 0.22 -2.09 16 7 C -0.08 -2.77 5.09 -20.13 -0.10 -2.87 16 8 C -0.06 -2.44 5.26 29.85 0.16 -2.28 16 9 C 0.03 1.71 4.95 29.85 0.15 1.86 16 10 C -0.54 -29.93 9.11 25.60 0.23 -29.70 16 11 H 0.07 3.44 7.74 -2.91 -0.02 3.41 16 12 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 13 N -0.94 -56.81 13.29 21.45 0.28 -56.53 16 14 Si 0.96 43.65 29.54 68.60 2.03 45.68 16 15 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 16 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 17 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 18 C -0.06 -1.66 9.61 22.06 0.21 -1.45 16 19 C -0.11 -2.50 10.01 22.10 0.22 -2.28 16 20 C 0.07 2.00 6.94 39.03 0.27 2.27 16 21 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 22 H 0.12 0.78 8.14 -2.38 -0.02 0.76 16 23 H 0.11 0.99 8.14 -2.39 -0.02 0.98 16 24 H 0.13 4.60 8.06 -2.91 -0.02 4.57 16 25 H 0.06 2.43 8.07 -2.39 -0.02 2.41 16 26 H 0.08 2.83 8.08 -2.39 -0.02 2.81 16 27 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 28 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 29 H 0.26 15.01 8.31 -92.71 -0.77 14.23 16 30 H 0.16 3.58 8.06 -2.91 -0.02 3.56 16 31 H 0.17 2.36 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -72.07 276.34 5.39 -66.69 By element: Atomic # 1 Polarization: -0.18 SS G_CDS: 1.12 Total: 0.94 kcal Atomic # 6 Polarization: -38.18 SS G_CDS: 3.58 Total: -34.60 kcal Atomic # 7 Polarization: -77.37 SS G_CDS: -1.34 Total: -78.71 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -72.07 5.39 -66.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259869457.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.712 kcal (2) G-P(sol) polarization free energy of solvation -72.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds