Wall clock time and date at job start Mon Mar 30 2020 03:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46495 * 119.99955 * 2 1 4 4 C 1.38772 * 119.99353 * 179.97438 * 2 1 3 5 5 C 1.40962 * 120.34487 * 0.02562 * 4 2 1 6 6 C 1.35004 * 120.30387 * 179.97438 * 5 4 2 7 7 N 1.36463 * 120.82405 * 0.26041 * 6 5 4 8 8 C 1.37965 * 132.90784 * 179.69922 * 7 6 5 9 9 C 1.39514 * 125.63854 * 0.03539 * 8 7 6 10 10 H 1.08005 * 119.99635 * 0.02562 * 9 8 7 11 11 C 1.39781 * 120.00116 * 180.02562 * 9 8 7 12 12 N 1.31034 * 120.00154 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00243 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46854 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47503 * 119.99899 * 13 11 9 16 16 H 1.48498 * 109.47359 * 240.00180 * 13 11 9 17 17 N 1.33402 * 108.72269 * 180.02562 * 8 7 6 18 18 C 1.32144 * 109.92882 * 359.40261 * 17 8 7 19 19 C 1.37915 * 120.48190 * 359.43639 * 7 6 5 20 20 C 1.38807 * 120.33338 * 179.97438 * 4 2 1 21 21 H 1.09003 * 109.47079 * 270.00824 * 1 2 3 22 22 H 1.09004 * 109.46714 * 30.00083 * 1 2 3 23 23 H 1.08994 * 109.47325 * 149.99862 * 1 2 3 24 24 H 1.09006 * 109.47042 * 269.99191 * 3 2 1 25 25 H 1.08993 * 109.47702 * 29.99606 * 3 2 1 26 26 H 1.08999 * 109.46906 * 150.00131 * 3 2 1 27 27 H 1.08000 * 119.84396 * 359.97438 * 5 4 2 28 28 H 1.08002 * 119.58472 * 179.97438 * 6 5 4 29 29 H 0.97002 * 120.00463 * 180.02562 * 12 11 9 30 30 H 1.07995 * 125.95039 * 179.90497 * 18 17 8 31 31 H 1.07996 * 120.49158 * 0.04671 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1588 -1.2019 0.0005 5 6 1.4612 -2.4268 0.0005 6 6 2.1369 -3.5955 0.0005 7 7 3.5014 -3.6144 0.0059 8 6 4.4267 -4.6377 0.0125 9 6 4.1308 -6.0011 0.0147 10 1 3.1022 -6.3305 0.0107 11 6 5.1656 -6.9409 0.0221 12 7 6.4135 -6.5413 0.0275 13 14 4.7694 -8.7664 0.0258 14 1 3.2962 -8.9532 0.0204 15 1 5.3539 -9.4022 -1.1822 16 1 5.3431 -9.3950 1.2427 17 7 5.6510 -4.1080 0.0162 18 6 5.5712 -2.7891 -0.0006 19 6 4.2174 -2.4356 -0.0003 20 6 3.5468 -1.2101 0.0000 21 1 -0.3633 0.0001 1.0277 22 1 -0.3633 0.8900 -0.5139 23 1 -0.3634 -0.8899 -0.5138 24 1 2.3793 1.5833 -1.0277 25 1 1.6085 2.0284 0.5137 26 1 3.1499 1.1383 0.5138 27 1 0.3812 -2.4302 0.0005 28 1 1.5907 -4.5273 0.0010 29 1 7.1316 -7.1934 0.0323 30 1 6.4055 -2.1034 -0.0006 31 1 4.1003 -0.2828 -0.0001 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260002864.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:20 Heat of formation + Delta-G solvation = 98.035646 kcal Electronic energy + Delta-G solvation = -15536.404803 eV Core-core repulsion = 13012.399265 eV Total energy + Delta-G solvation = -2524.005537 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.70720 -37.67529 -34.70964 -33.28673 -31.27295 -29.65140 -28.23027 -27.43975 -25.48347 -23.24002 -22.04173 -20.34743 -19.90750 -17.47282 -16.10523 -15.88832 -15.43785 -14.81939 -14.80536 -14.16219 -13.92584 -13.33814 -13.06694 -12.50305 -12.38361 -12.11777 -11.87379 -11.69582 -11.31396 -11.19649 -10.83527 -10.58985 -10.52447 -10.11712 -9.69052 -9.28061 -8.05248 -8.02510 -7.53212 -6.46924 -6.17296 -4.04080 2.03869 2.63696 3.11297 3.13626 3.17600 3.59233 3.95824 4.30844 4.41691 4.81358 5.21751 5.24669 5.43645 5.50215 5.57285 5.69808 5.76818 5.82606 5.91541 6.13127 6.21694 6.44840 6.54622 6.79378 6.97961 7.13788 7.24860 7.53825 7.82895 7.87789 8.07957 8.22419 8.43697 8.88420 9.18119 10.04023 10.45481 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.050339 B = 0.006580 C = 0.005844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.090001 B = 4254.416402 C = 4790.044506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.640 5.640 3 C 0.102 3.898 4 C 0.147 3.853 5 C -0.222 4.222 6 C 0.126 3.874 7 N -0.425 5.425 8 C 0.347 3.653 9 C -0.448 4.448 10 H 0.080 0.920 11 C 0.076 3.924 12 N -0.742 5.742 13 Si 0.916 3.084 14 H -0.263 1.263 15 H -0.274 1.274 16 H -0.274 1.274 17 N -0.475 5.475 18 C -0.022 4.022 19 C -0.077 4.077 20 C -0.157 4.157 21 H 0.037 0.963 22 H 0.056 0.944 23 H 0.064 0.936 24 H 0.039 0.961 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.126 0.874 28 H 0.145 0.855 29 H 0.273 0.727 30 H 0.145 0.855 31 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.186 7.883 -0.052 12.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.356 5.356 3 C -0.041 4.041 4 C 0.047 3.953 5 C -0.246 4.246 6 C 0.001 3.999 7 N -0.104 5.104 8 C 0.109 3.891 9 C -0.487 4.487 10 H 0.098 0.902 11 C -0.147 4.147 12 N -0.367 5.367 13 Si 0.740 3.260 14 H -0.187 1.187 15 H -0.199 1.199 16 H -0.199 1.199 17 N -0.192 5.192 18 C -0.178 4.178 19 C -0.181 4.181 20 C -0.184 4.184 21 H 0.056 0.944 22 H 0.074 0.926 23 H 0.083 0.917 24 H 0.057 0.943 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.143 0.857 28 H 0.162 0.838 29 H 0.084 0.916 30 H 0.162 0.838 31 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.268 7.415 -0.033 11.106 hybrid contribution -1.003 -0.190 -0.001 1.021 sum -9.272 7.225 -0.034 11.754 Atomic orbital electron populations 1.21445 0.80694 1.01743 1.00198 1.45614 1.04033 1.02978 1.82949 1.21454 0.97204 0.85131 1.00359 1.17367 0.90716 0.84817 1.02401 1.19994 0.98835 0.90452 1.15362 1.21123 0.83144 0.98520 0.97151 1.43207 1.04119 1.08742 1.54314 1.20304 0.80702 0.88644 0.99458 1.18024 0.94535 0.86836 1.49302 0.90185 1.25665 0.94420 1.00785 0.93813 1.70167 0.99271 1.35249 1.32019 0.86152 0.79553 0.81834 0.78456 1.18725 1.19929 1.19937 1.71020 1.19216 1.05169 1.23772 1.22501 0.91667 0.93777 1.09836 1.18791 0.93035 0.85240 1.21077 1.19635 0.90873 0.95359 1.12484 0.94422 0.92569 0.91743 0.94290 0.92598 0.91508 0.85676 0.83751 0.91610 0.83803 0.86545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.20 10.19 59.85 0.61 1.81 16 2 N -0.64 -9.67 3.38 -187.20 -0.63 -10.31 16 3 C 0.10 1.26 10.19 59.84 0.61 1.87 16 4 C 0.15 2.77 6.58 -83.48 -0.55 2.22 16 5 C -0.22 -4.08 9.13 -39.70 -0.36 -4.44 16 6 C 0.13 2.63 10.79 -16.64 -0.18 2.45 16 7 N -0.43 -10.77 3.00 -60.30 -0.18 -10.95 16 8 C 0.35 9.86 7.48 -155.02 -1.16 8.70 16 9 C -0.45 -12.21 9.18 -38.53 -0.35 -12.56 16 10 H 0.08 2.00 7.67 -52.48 -0.40 1.60 16 11 C 0.08 2.00 5.49 -17.32 -0.10 1.91 16 12 N -0.74 -20.69 11.86 55.54 0.66 -20.03 16 13 Si 0.92 19.05 29.56 -169.99 -5.02 14.03 16 14 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 15 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 16 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 17 N -0.47 -13.98 9.28 -11.87 -0.11 -14.09 16 18 C -0.02 -0.57 12.01 -16.79 -0.20 -0.77 16 19 C -0.08 -1.91 6.80 -83.95 -0.57 -2.48 16 20 C -0.16 -3.28 9.30 -38.83 -0.36 -3.64 16 21 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 22 H 0.06 0.53 8.07 -51.93 -0.42 0.11 16 23 H 0.06 0.73 6.20 -51.93 -0.32 0.41 16 24 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.55 8.07 -51.93 -0.42 0.13 16 26 H 0.07 0.85 6.21 -51.93 -0.32 0.53 16 27 H 0.13 1.87 6.19 -52.49 -0.32 1.54 16 28 H 0.15 2.64 7.88 -52.49 -0.41 2.23 16 29 H 0.27 6.88 8.30 -40.82 -0.34 6.54 16 30 H 0.14 3.29 8.06 -52.49 -0.42 2.87 16 31 H 0.12 2.16 6.19 -52.49 -0.32 1.83 16 LS Contribution 264.68 15.07 3.99 3.99 Total: -1.00 -32.54 264.68 -7.27 -39.81 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -3.35 Total: 2.49 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: -2.61 Total: -4.94 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: -0.27 Total: -55.38 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.02 Total: 14.03 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -32.54 -7.27 -39.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260002864.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.846 kcal (2) G-P(sol) polarization free energy of solvation -32.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds