Wall clock time and date at job start Mon Mar 30 2020 03:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30628 * 1 3 3 Si 1.86810 * 119.99732 * 2 1 4 4 H 1.48501 * 109.46992 * 240.00093 * 3 2 1 5 5 H 1.48495 * 109.47050 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46747 * 120.00467 * 3 2 1 7 7 C 1.40186 * 120.00229 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00377 * 179.97438 * 7 2 1 9 9 C 1.41334 * 120.00441 * 0.02562 * 7 2 1 10 10 C 1.40663 * 120.25865 * 180.02562 * 9 7 2 11 11 C 1.39394 * 118.65219 * 179.97438 * 10 9 7 12 12 O 1.22166 * 120.37811 * 179.97438 * 11 10 9 13 13 N 1.34995 * 119.24723 * 359.74114 * 11 10 9 14 14 C 1.36193 * 119.34140 * 179.72213 * 13 11 10 15 15 C 1.35339 * 120.95937 * 180.21889 * 14 13 11 16 16 C 1.40062 * 120.28806 * 0.30359 * 15 14 13 17 17 C 1.36743 * 119.49951 * 359.97438 * 16 15 14 18 18 O 1.35827 * 120.33488 * 180.02562 * 17 16 15 19 19 C 1.36913 * 120.26454 * 0.50608 * 13 11 10 20 20 N 1.32585 * 121.15638 * 359.48614 * 19 13 11 21 21 H 0.96994 * 119.99804 * 359.97438 * 1 2 3 22 22 H 1.08006 * 120.67428 * 359.97438 * 10 9 7 23 23 H 1.08002 * 119.52353 * 0.50360 * 14 13 11 24 24 H 1.07994 * 119.85129 * 180.28486 * 15 14 13 25 25 H 1.07996 * 120.24814 * 180.02562 * 16 15 14 26 26 H 0.96698 * 113.99281 * 0.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6179 0.0000 4 1 3.0940 1.6965 -1.2125 5 1 1.2752 2.7465 0.0006 6 1 3.0941 1.6964 1.2125 7 6 2.0073 -1.2140 -0.0005 8 1 3.0873 -1.2140 -0.0010 9 6 1.3007 -2.4381 -0.0016 10 6 1.9987 -3.6593 -0.0016 11 6 1.2683 -4.8466 -0.0022 12 8 1.8422 -5.9250 -0.0027 13 7 -0.0805 -4.7912 0.0026 14 6 -0.7961 -5.9500 -0.0037 15 6 -2.1493 -5.9326 -0.0036 16 6 -2.8402 -4.7142 -0.0033 17 6 -2.1369 -3.5415 -0.0027 18 8 -2.7896 -2.3503 -0.0020 19 6 -0.7215 -3.5814 -0.0025 20 7 -0.0400 -2.4441 -0.0020 21 1 -0.4849 0.8400 0.0004 22 1 3.0786 -3.6768 -0.0012 23 1 -0.2761 -6.8966 -0.0041 24 1 -2.6989 -6.8623 -0.0039 25 1 -3.9200 -4.7011 -0.0028 26 1 -3.7533 -2.4299 -0.0015 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260314536.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:25 Heat of formation + Delta-G solvation = -30.691798 kcal Electronic energy + Delta-G solvation = -15750.973381 eV Core-core repulsion = 12987.834046 eV Total energy + Delta-G solvation = -2763.139335 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 232.063 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.93097 -39.65586 -38.08376 -37.73627 -35.39647 -33.56202 -32.06692 -29.77209 -28.55071 -25.63202 -24.28661 -23.58198 -20.70301 -19.53361 -18.85875 -18.58498 -17.67232 -17.11597 -16.87605 -15.92686 -15.60150 -15.16954 -14.94027 -14.74604 -14.24791 -13.53270 -13.29619 -13.28213 -13.10467 -12.94972 -12.58689 -12.53058 -12.03310 -11.26670 -10.85784 -10.79190 -10.31187 -9.86305 -8.63414 -8.21059 -6.93887 -0.32960 0.15058 1.36301 1.38673 1.53325 1.60325 1.67320 2.06750 2.15048 2.72192 3.03804 3.55969 3.59282 3.91344 4.00268 4.20506 4.57008 4.80796 4.93010 4.99636 5.04741 5.13957 5.29397 5.41104 5.77403 5.92650 6.09769 6.29767 6.59118 6.96786 7.27669 7.59126 8.14231 Molecular weight = 232.06amu Principal moments of inertia in cm(-1) A = 0.030817 B = 0.009895 C = 0.007510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.369621 B = 2829.068690 C = 3727.595322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.709 5.709 2 C 0.016 3.984 3 Si 1.002 2.998 4 H -0.257 1.257 5 H -0.256 1.256 6 H -0.257 1.257 7 C -0.405 4.405 8 H 0.100 0.900 9 C 0.246 3.754 10 C -0.500 4.500 11 C 0.484 3.516 12 O -0.642 6.642 13 N -0.446 5.446 14 C 0.024 3.976 15 C -0.136 4.136 16 C -0.148 4.148 17 C 0.117 3.883 18 O -0.452 6.452 19 C 0.332 3.668 20 N -0.485 5.485 21 H 0.296 0.704 22 H 0.104 0.896 23 H 0.160 0.840 24 H 0.194 0.806 25 H 0.201 0.799 26 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.824 -0.144 -0.013 11.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.328 5.328 2 C -0.211 4.211 3 Si 0.820 3.180 4 H -0.181 1.181 5 H -0.179 1.179 6 H -0.181 1.181 7 C -0.433 4.433 8 H 0.118 0.882 9 C 0.127 3.873 10 C -0.526 4.526 11 C 0.304 3.696 12 O -0.537 6.537 13 N -0.155 5.155 14 C -0.097 4.097 15 C -0.159 4.159 16 C -0.173 4.173 17 C 0.067 3.933 18 O -0.256 6.256 19 C 0.079 3.921 20 N -0.208 5.208 21 H 0.107 0.893 22 H 0.123 0.877 23 H 0.178 0.822 24 H 0.212 0.788 25 H 0.218 0.782 26 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -11.256 0.580 -0.006 11.271 hybrid contribution 0.841 -0.460 -0.003 0.959 sum -10.415 0.120 -0.009 10.415 Atomic orbital electron populations 1.70070 1.08860 1.31108 1.22739 1.27319 0.96142 1.05024 0.92655 0.84961 0.78675 0.74010 0.80386 1.18086 1.17911 1.18095 1.20336 0.95668 0.89820 1.37475 0.88242 1.18920 0.87868 0.93488 0.86986 1.21879 0.99135 0.91300 1.40305 1.16711 0.80001 0.91193 0.81719 1.90705 1.68435 1.32273 1.62301 1.43750 1.09250 1.07172 1.55287 1.22355 0.94673 0.90384 1.02312 1.20950 0.90365 1.00788 1.03751 1.21832 1.02713 0.89273 1.03433 1.17814 0.86676 0.87462 1.01374 1.85131 1.25506 1.25387 1.89583 1.20782 0.94446 0.80930 0.95939 1.69800 1.08374 1.19266 1.23387 0.89287 0.87737 0.82237 0.78850 0.78247 0.72694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -35.40 11.49 21.86 0.25 -35.15 15 2 C 0.02 0.76 5.50 85.35 0.47 1.23 15 3 Si 1.00 35.33 29.56 68.60 2.03 37.36 15 4 H -0.26 -8.86 7.11 99.48 0.71 -8.15 15 5 H -0.26 -8.21 7.11 99.48 0.71 -7.50 15 6 H -0.26 -8.86 7.11 99.48 0.71 -8.16 15 7 C -0.41 -22.12 9.17 23.51 0.22 -21.90 15 8 H 0.10 5.12 7.85 -2.91 -0.02 5.10 15 9 C 0.25 14.51 6.57 40.16 0.26 14.77 15 10 C -0.50 -30.20 9.82 23.14 0.23 -29.97 15 11 C 0.48 28.10 7.33 84.49 0.62 28.72 15 12 O -0.64 -39.00 16.64 -5.86 -0.10 -39.10 15 13 N -0.45 -21.85 2.77 -478.44 -1.32 -23.18 15 14 C 0.02 0.90 10.06 83.35 0.84 1.74 15 15 C -0.14 -3.41 9.99 22.04 0.22 -3.19 15 16 C -0.15 -3.46 9.75 22.36 0.22 -3.24 15 17 C 0.12 4.14 6.92 22.75 0.16 4.29 15 18 O -0.45 -14.39 13.32 -91.61 -1.22 -15.61 15 19 C 0.33 16.13 7.35 134.32 0.99 17.11 15 20 N -0.49 -27.08 7.61 -185.83 -1.41 -28.49 15 21 H 0.30 12.94 8.29 -92.71 -0.77 12.17 15 22 H 0.10 6.32 8.06 -2.91 -0.02 6.29 15 23 H 0.16 5.86 7.30 -2.91 -0.02 5.84 15 24 H 0.19 2.79 8.06 -2.91 -0.02 2.76 15 25 H 0.20 2.15 7.98 -2.91 -0.02 2.13 15 26 H 0.42 6.38 8.72 -74.06 -0.65 5.74 15 Total: -1.00 -81.42 241.41 3.03 -78.39 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: 0.59 Total: 16.22 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: 4.22 Total: 9.57 kcal Atomic # 7 Polarization: -84.33 SS G_CDS: -2.49 Total: -86.82 kcal Atomic # 8 Polarization: -53.40 SS G_CDS: -1.32 Total: -54.71 kcal Atomic # 14 Polarization: 35.33 SS G_CDS: 2.03 Total: 37.36 kcal Total: -81.42 3.03 -78.39 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260314536.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.695 kcal (2) G-P(sol) polarization free energy of solvation -81.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds