Wall clock time and date at job start Mon Mar 30 2020 03:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30758 * 1 3 3 Si 1.86796 * 119.99950 * 2 1 4 4 H 1.48499 * 109.47407 * 274.52447 * 3 2 1 5 5 H 1.48500 * 109.47270 * 34.52429 * 3 2 1 6 6 H 1.48502 * 109.47007 * 154.52379 * 3 2 1 7 7 C 1.40065 * 120.00000 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00150 * 162.14701 * 7 2 1 9 9 C 1.41072 * 120.00079 * 342.42906 * 7 2 1 10 10 C 1.40906 * 120.11938 * 334.43685 * 9 7 2 11 11 C 1.36305 * 119.86924 * 179.71993 * 10 9 7 12 12 C 1.39866 * 120.12620 * 0.58304 * 11 10 9 13 13 C 1.48124 * 119.87274 * 179.71425 * 12 11 10 14 14 N 1.30966 * 126.37718 * 179.66422 * 13 12 11 15 15 O 1.21267 * 110.24931 * 179.86690 * 14 13 12 16 16 C 1.33978 * 110.01676 * 0.40314 * 15 14 13 17 17 O 1.35073 * 126.50459 * 179.78515 * 16 15 14 18 18 N 1.31704 * 106.98997 * 359.74948 * 16 15 14 19 19 C 1.39858 * 120.24580 * 359.69278 * 12 11 10 20 20 C 1.36302 * 120.12958 * 359.97438 * 19 12 11 21 21 H 0.96998 * 120.00062 * 359.97438 * 1 2 3 22 22 H 1.07994 * 120.06495 * 0.02562 * 10 9 7 23 23 H 1.08001 * 119.93791 * 180.32028 * 11 10 9 24 24 H 0.96693 * 113.99989 * 269.95692 * 17 16 15 25 25 H 1.08005 * 119.92928 * 180.02562 * 19 12 11 26 26 H 1.08001 * 120.06172 * 180.02562 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.3934 2.1017 -1.3957 5 1 1.4901 2.6232 0.7935 6 1 3.5837 1.4144 0.6022 7 6 2.0079 -1.2130 -0.0005 8 1 3.0489 -1.2354 -0.2873 9 6 1.3519 -2.4064 0.3677 10 6 0.2307 -2.3629 1.2200 11 6 -0.4028 -3.5186 1.5680 12 6 0.0656 -4.7470 1.0906 13 6 -0.6232 -6.0000 1.4774 14 7 -0.2992 -7.2122 1.1022 15 8 -1.0582 -8.0205 1.5932 16 6 -1.9732 -7.3930 2.3443 17 8 -2.9775 -7.9719 3.0377 18 7 -1.7070 -6.1048 2.2789 19 6 1.1816 -4.7966 0.2491 20 6 1.8187 -3.6466 -0.1108 21 1 -0.4850 0.8400 0.0004 22 1 -0.1292 -1.4153 1.5927 23 1 -1.2654 -3.4861 2.2169 24 1 -3.7983 -8.0669 2.5355 25 1 1.5387 -5.7479 -0.1169 26 1 2.6802 -3.6861 -0.7610 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260403774.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:49 Heat of formation + Delta-G solvation = 45.061593 kcal Electronic energy + Delta-G solvation = -14941.353919 eV Core-core repulsion = 12181.499498 eV Total energy + Delta-G solvation = -2759.854421 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 232.063 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -44.87486 -38.11997 -37.77782 -35.27644 -33.82571 -31.29071 -29.95935 -29.37299 -26.07629 -23.66394 -22.91607 -20.92037 -20.66849 -19.09697 -17.82603 -17.53603 -16.52728 -15.58754 -15.13886 -14.91285 -14.06873 -13.42007 -13.35563 -12.78827 -12.17332 -12.11014 -11.76211 -11.32808 -11.22700 -11.19985 -10.90589 -10.73649 -10.56591 -9.96668 -9.68051 -9.54091 -9.23779 -7.72234 -7.45750 -7.04117 -4.59401 1.34354 2.03978 2.48524 2.84638 2.94783 3.00276 3.01537 3.41853 3.74061 4.14838 4.46202 4.74049 5.25938 5.52920 6.09022 6.18924 6.28128 6.43196 6.79301 6.83213 6.99891 7.03698 7.14268 7.43221 7.64413 7.82625 7.90384 8.04101 8.38767 8.60830 8.71283 8.73537 9.87776 Molecular weight = 232.06amu Principal moments of inertia in cm(-1) A = 0.065916 B = 0.005417 C = 0.005074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.683237 B = 5167.241682 C = 5517.300418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.073 3.927 3 Si 0.914 3.086 4 H -0.267 1.267 5 H -0.272 1.272 6 H -0.257 1.257 7 C -0.439 4.439 8 H 0.086 0.914 9 C 0.127 3.873 10 C -0.177 4.177 11 C -0.046 4.046 12 C -0.187 4.187 13 C 0.275 3.725 14 N -0.403 5.403 15 O 0.048 5.952 16 C 0.328 3.672 17 O -0.413 6.413 18 N -0.472 5.472 19 C -0.038 4.038 20 C -0.232 4.232 21 H 0.287 0.713 22 H 0.122 0.878 23 H 0.101 0.899 24 H 0.416 0.584 25 H 0.097 0.903 26 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.657 -5.445 1.824 6.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.148 4.148 3 Si 0.737 3.263 4 H -0.192 1.192 5 H -0.197 1.197 6 H -0.181 1.181 7 C -0.467 4.467 8 H 0.104 0.896 9 C 0.123 3.877 10 C -0.196 4.196 11 C -0.066 4.066 12 C -0.192 4.192 13 C 0.010 3.990 14 N -0.121 5.121 15 O -0.007 6.007 16 C 0.069 3.931 17 O -0.218 6.218 18 N -0.220 5.220 19 C -0.059 4.059 20 C -0.252 4.252 21 H 0.098 0.902 22 H 0.140 0.860 23 H 0.119 0.881 24 H 0.275 0.725 25 H 0.115 0.885 26 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.018 -5.243 1.910 6.344 hybrid contribution -0.476 0.437 -0.226 0.685 sum -3.494 -4.805 1.683 6.175 Atomic orbital electron populations 1.69794 1.07884 1.30138 1.31463 1.26099 0.94834 1.01943 0.91954 0.86196 0.80825 0.79898 0.79372 1.19241 1.19700 1.18068 1.19818 0.98377 0.91164 1.37294 0.89623 1.17798 0.90440 0.92159 0.87262 1.20971 0.99892 0.96860 1.01885 1.20427 0.97578 0.91429 0.97210 1.16730 1.02553 0.86511 1.13434 1.23949 0.90042 0.93592 0.91440 1.75095 1.15197 1.00899 1.20937 1.85360 1.32476 1.35687 1.47131 1.25424 0.90998 0.84883 0.91821 1.84825 1.21043 1.80143 1.35816 1.72496 1.15997 1.12711 1.20766 1.20273 0.93468 0.97285 0.94843 1.20662 1.04515 0.92503 1.07506 0.90159 0.86048 0.88094 0.72484 0.88452 0.88160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.54 11.00 55.55 0.61 -17.93 15 2 C 0.07 1.70 5.13 -17.32 -0.09 1.61 15 3 Si 0.91 17.21 29.60 -169.99 -5.03 12.18 15 4 H -0.27 -4.97 7.11 56.52 0.40 -4.57 15 5 H -0.27 -5.02 7.11 56.52 0.40 -4.62 15 6 H -0.26 -4.82 7.11 56.52 0.40 -4.42 15 7 C -0.44 -10.84 9.03 -37.82 -0.34 -11.19 15 8 H 0.09 2.00 7.91 -52.49 -0.42 1.59 15 9 C 0.13 3.24 5.56 -106.81 -0.59 2.64 15 10 C -0.18 -4.44 8.63 -39.27 -0.34 -4.78 15 11 C -0.05 -1.10 9.63 -39.67 -0.38 -1.48 15 12 C -0.19 -4.41 5.90 -104.62 -0.62 -5.03 15 13 C 0.27 5.98 7.78 -156.09 -1.22 4.76 15 14 N -0.40 -8.23 11.83 31.16 0.37 -7.87 15 15 O 0.05 0.84 11.31 -5.91 -0.07 0.77 15 16 C 0.33 5.29 9.80 52.45 0.51 5.81 15 17 O -0.41 -4.65 13.62 -40.08 -0.55 -5.19 15 18 N -0.47 -9.36 11.26 -13.76 -0.16 -9.52 15 19 C -0.04 -0.89 9.62 -39.67 -0.38 -1.27 15 20 C -0.23 -5.53 9.73 -39.27 -0.38 -5.92 15 21 H 0.29 6.21 8.29 -40.82 -0.34 5.87 15 22 H 0.12 3.09 6.21 -52.49 -0.33 2.76 15 23 H 0.10 2.28 7.85 -52.49 -0.41 1.87 15 24 H 0.42 2.02 9.06 45.56 0.41 2.44 15 25 H 0.10 2.09 7.85 -52.48 -0.41 1.68 15 26 H 0.10 2.20 8.06 -52.49 -0.42 1.78 15 LS Contribution 245.98 15.07 3.71 3.71 Total: -1.00 -28.66 245.98 -5.65 -34.31 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -0.71 Total: 4.38 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: -3.83 Total: -14.84 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: 0.82 Total: -35.31 kcal Atomic # 8 Polarization: -3.81 SS G_CDS: -0.61 Total: -4.42 kcal Atomic # 14 Polarization: 17.21 SS G_CDS: -5.03 Total: 12.18 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -28.66 -5.65 -34.31 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260403774.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.368 kcal (2) G-P(sol) polarization free energy of solvation -28.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds