Wall clock time and date at job start Mon Mar 30 2020 03:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30758 * 1 3 3 Si 1.86796 * 119.99950 * 2 1 4 4 H 1.48499 * 109.47407 * 274.52447 * 3 2 1 5 5 H 1.48500 * 109.47270 * 34.52429 * 3 2 1 6 6 H 1.48502 * 109.47007 * 154.52379 * 3 2 1 7 7 C 1.40065 * 120.00000 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00150 * 162.14701 * 7 2 1 9 9 C 1.41072 * 120.00079 * 342.42906 * 7 2 1 10 10 C 1.40906 * 120.11938 * 334.43685 * 9 7 2 11 11 C 1.36305 * 119.86924 * 179.71993 * 10 9 7 12 12 C 1.39866 * 120.12620 * 0.58304 * 11 10 9 13 13 C 1.48124 * 119.87274 * 179.71425 * 12 11 10 14 14 N 1.30966 * 126.37718 * 179.66422 * 13 12 11 15 15 O 1.21267 * 110.24931 * 179.86690 * 14 13 12 16 16 C 1.33978 * 110.01676 * 0.40314 * 15 14 13 17 17 O 1.35073 * 126.50459 * 179.78515 * 16 15 14 18 18 N 1.31704 * 106.98997 * 359.74948 * 16 15 14 19 19 C 1.39858 * 120.24580 * 359.69278 * 12 11 10 20 20 C 1.36302 * 120.12958 * 359.97438 * 19 12 11 21 21 H 0.96998 * 120.00062 * 359.97438 * 1 2 3 22 22 H 1.07994 * 120.06495 * 0.02562 * 10 9 7 23 23 H 1.08001 * 119.93791 * 180.32028 * 11 10 9 24 24 H 0.96693 * 113.99989 * 269.95692 * 17 16 15 25 25 H 1.08005 * 119.92928 * 180.02562 * 19 12 11 26 26 H 1.08001 * 120.06172 * 180.02562 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.3934 2.1017 -1.3957 5 1 1.4901 2.6232 0.7935 6 1 3.5837 1.4144 0.6022 7 6 2.0079 -1.2130 -0.0005 8 1 3.0489 -1.2354 -0.2873 9 6 1.3519 -2.4064 0.3677 10 6 0.2307 -2.3629 1.2200 11 6 -0.4028 -3.5186 1.5680 12 6 0.0656 -4.7470 1.0906 13 6 -0.6232 -6.0000 1.4774 14 7 -0.2992 -7.2122 1.1022 15 8 -1.0582 -8.0205 1.5932 16 6 -1.9732 -7.3930 2.3443 17 8 -2.9775 -7.9719 3.0377 18 7 -1.7070 -6.1048 2.2789 19 6 1.1816 -4.7966 0.2491 20 6 1.8187 -3.6466 -0.1108 21 1 -0.4850 0.8400 0.0004 22 1 -0.1292 -1.4153 1.5927 23 1 -1.2654 -3.4861 2.2169 24 1 -3.7983 -8.0669 2.5355 25 1 1.5387 -5.7479 -0.1169 26 1 2.6802 -3.6861 -0.7610 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260403774.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:49 Heat of formation + Delta-G solvation = 24.063151 kcal Electronic energy + Delta-G solvation = -14942.264480 eV Core-core repulsion = 12181.499498 eV Total energy + Delta-G solvation = -2760.764982 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 232.063 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -46.39499 -39.60551 -39.17144 -36.84594 -35.55647 -32.86456 -31.77079 -31.15311 -27.85033 -25.21240 -24.47542 -22.59420 -22.41444 -20.44112 -19.36255 -19.28732 -17.99538 -17.32026 -16.63194 -16.24818 -15.77943 -15.17160 -14.71151 -14.45842 -14.00077 -13.85617 -13.42612 -12.99705 -12.79316 -12.58849 -12.48218 -12.30277 -12.14822 -11.71218 -11.35758 -11.26425 -10.90934 -9.59024 -9.28392 -8.78474 -6.45389 -0.06782 0.45736 1.12264 1.18531 1.34500 1.41563 1.55871 1.74856 2.17419 2.68331 2.69377 3.17874 3.65463 4.05793 4.38494 4.40520 4.58371 4.89804 4.97484 5.04148 5.19575 5.28218 5.59080 5.80736 5.97639 6.04291 6.19405 6.20772 6.53581 6.76587 6.86414 7.24972 8.16994 Molecular weight = 232.06amu Principal moments of inertia in cm(-1) A = 0.065916 B = 0.005417 C = 0.005074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.683237 B = 5167.241682 C = 5517.300418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.035 3.965 3 Si 0.989 3.011 4 H -0.260 1.260 5 H -0.264 1.264 6 H -0.255 1.255 7 C -0.470 4.470 8 H 0.090 0.910 9 C 0.100 3.900 10 C -0.194 4.194 11 C -0.049 4.049 12 C -0.195 4.195 13 C 0.255 3.745 14 N -0.409 5.409 15 O 0.063 5.937 16 C 0.359 3.641 17 O -0.398 6.398 18 N -0.499 5.499 19 C -0.041 4.041 20 C -0.243 4.243 21 H 0.296 0.704 22 H 0.111 0.889 23 H 0.108 0.892 24 H 0.447 0.553 25 H 0.113 0.887 26 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.116 -6.097 2.132 7.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.183 4.183 3 Si 0.808 3.192 4 H -0.184 1.184 5 H -0.189 1.189 6 H -0.179 1.179 7 C -0.497 4.497 8 H 0.108 0.892 9 C 0.097 3.903 10 C -0.214 4.214 11 C -0.070 4.070 12 C -0.199 4.199 13 C -0.011 4.011 14 N -0.125 5.125 15 O 0.005 5.995 16 C 0.101 3.899 17 O -0.208 6.208 18 N -0.247 5.247 19 C -0.062 4.062 20 C -0.263 4.263 21 H 0.108 0.892 22 H 0.129 0.871 23 H 0.126 0.874 24 H 0.313 0.687 25 H 0.131 0.869 26 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -3.514 -5.906 2.206 7.218 hybrid contribution -0.520 0.376 -0.240 0.685 sum -4.034 -5.529 1.966 7.121 Atomic orbital electron populations 1.69828 1.09347 1.31618 1.31708 1.26964 0.95520 1.05032 0.90823 0.85083 0.79246 0.75198 0.79640 1.18437 1.18862 1.17897 1.20098 0.98841 0.92046 1.38721 0.89177 1.18122 0.91033 0.93250 0.87935 1.20945 1.00733 0.96863 1.02839 1.20510 0.97693 0.91460 0.97287 1.16918 1.02640 0.87332 1.12999 1.23705 0.91133 0.93421 0.92867 1.75077 1.15761 1.00642 1.21058 1.85328 1.32433 1.34733 1.47010 1.25354 0.90896 0.84022 0.89676 1.84842 1.21434 1.79127 1.35415 1.72450 1.15988 1.14640 1.21609 1.20444 0.93353 0.97671 0.94688 1.20859 1.05141 0.92405 1.07872 0.89246 0.87142 0.87397 0.68663 0.86937 0.86911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -39.24 11.00 21.85 0.24 -39.00 15 2 C 0.04 1.66 5.13 85.30 0.44 2.09 15 3 Si 0.99 35.03 29.60 68.60 2.03 37.06 15 4 H -0.26 -8.84 7.11 99.48 0.71 -8.13 15 5 H -0.26 -8.94 7.11 99.48 0.71 -8.23 15 6 H -0.26 -8.90 7.11 99.48 0.71 -8.19 15 7 C -0.47 -23.70 9.03 23.41 0.21 -23.48 15 8 H 0.09 4.29 7.91 -2.91 -0.02 4.27 15 9 C 0.10 5.24 5.56 -21.28 -0.12 5.12 15 10 C -0.19 -10.09 8.63 22.47 0.19 -9.90 15 11 C -0.05 -2.41 9.63 22.21 0.21 -2.19 15 12 C -0.19 -9.20 5.90 -19.87 -0.12 -9.32 15 13 C 0.26 10.86 7.78 137.15 1.07 11.93 15 14 N -0.41 -16.05 11.83 -58.22 -0.69 -16.74 15 15 O 0.06 2.03 11.31 93.93 1.06 3.09 15 16 C 0.36 10.52 9.80 130.35 1.28 11.80 15 17 O -0.40 -7.29 13.62 -61.33 -0.84 -8.13 15 18 N -0.50 -18.97 11.26 -427.24 -4.81 -23.79 15 19 C -0.04 -1.93 9.62 22.21 0.21 -1.71 15 20 C -0.24 -11.79 9.73 22.47 0.22 -11.58 15 21 H 0.30 12.92 8.29 -92.71 -0.77 12.15 15 22 H 0.11 5.86 6.21 -2.91 -0.02 5.85 15 23 H 0.11 4.97 7.85 -2.91 -0.02 4.94 15 24 H 0.45 2.24 9.06 -74.06 -0.67 1.57 15 25 H 0.11 4.78 7.85 -2.91 -0.02 4.76 15 26 H 0.11 5.02 8.06 -2.91 -0.02 4.99 15 Total: -1.00 -61.94 245.98 1.17 -60.78 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: 0.57 Total: 13.96 kcal Atomic # 6 Polarization: -30.84 SS G_CDS: 3.60 Total: -27.24 kcal Atomic # 7 Polarization: -74.27 SS G_CDS: -5.26 Total: -79.53 kcal Atomic # 8 Polarization: -5.26 SS G_CDS: 0.23 Total: -5.04 kcal Atomic # 14 Polarization: 35.03 SS G_CDS: 2.03 Total: 37.06 kcal Total: -61.94 1.17 -60.78 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260403774.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.841 kcal (2) G-P(sol) polarization free energy of solvation -61.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds