Wall clock time and date at job start Mon Mar 30 2020 02:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35107 * 126.41063 * 2 1 4 4 C 1.50698 * 125.68410 * 0.02562 * 3 2 1 5 5 H 1.09000 * 109.47528 * 15.00812 * 4 3 2 6 6 N 1.46904 * 109.47065 * 135.00668 * 4 3 2 7 7 C 1.50704 * 109.47549 * 255.00134 * 4 3 2 8 8 H 1.08007 * 119.99372 * 354.59417 * 7 4 3 9 9 C 1.37869 * 120.00305 * 174.58818 * 7 4 3 10 10 N 1.31516 * 120.00286 * 165.31560 * 9 7 4 11 11 Si 1.86797 * 120.00294 * 345.03599 * 9 7 4 12 12 H 1.48498 * 109.47629 * 180.27602 * 11 9 7 13 13 H 1.48510 * 109.47014 * 300.27923 * 11 9 7 14 14 H 1.48497 * 109.47043 * 60.27391 * 11 9 7 15 15 N 1.33509 * 108.62785 * 180.27660 * 3 2 1 16 16 C 1.32563 * 109.15756 * 359.59448 * 15 3 2 17 17 C 1.40937 * 132.32783 * 180.15197 * 16 15 3 18 18 C 1.36020 * 119.32597 * 180.27118 * 17 16 15 19 19 C 1.40472 * 119.69625 * 0.02562 * 18 17 16 20 20 C 1.34953 * 120.29700 * 0.02562 * 19 18 17 21 21 N 1.36481 * 120.61022 * 359.97438 * 20 19 18 22 22 H 1.09000 * 109.46735 * 90.00217 * 1 2 3 23 23 H 1.08999 * 109.46998 * 210.00362 * 1 2 3 24 24 H 1.09002 * 109.46806 * 330.00313 * 1 2 3 25 25 H 1.00897 * 111.00094 * 53.70087 * 6 4 3 26 26 H 1.00899 * 111.00458 * 177.66023 * 6 4 3 27 27 H 0.97004 * 119.99242 * 354.49513 * 10 9 7 28 28 H 1.08007 * 120.33433 * 0.24513 * 17 16 15 29 29 H 1.08003 * 120.14907 * 179.97438 * 18 17 16 30 30 H 1.08001 * 119.85153 * 180.02562 * 19 18 17 31 31 H 1.07995 * 119.69282 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3090 1.0873 0.0000 4 6 1.8456 2.5213 0.0005 5 1 0.7895 2.5619 0.2671 6 7 2.6275 3.2881 0.9797 7 6 2.0406 3.1128 -1.3718 8 1 2.5377 2.5403 -2.1409 9 6 1.5842 4.3847 -1.6454 10 7 1.9958 5.0129 -2.7251 11 14 0.3754 5.2128 -0.4869 12 1 0.0379 6.5627 -1.0056 13 1 -0.8607 4.3949 -0.3939 14 1 0.9878 5.3390 0.8600 15 7 3.5802 0.6796 -0.0061 16 6 3.6121 -0.6457 -0.0012 17 6 4.6765 -1.5694 -0.0013 18 6 4.4024 -2.9017 -0.0009 19 6 3.0670 -3.3374 -0.0009 20 6 2.0583 -2.4409 -0.0019 21 7 2.3193 -1.1012 -0.0023 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 3.6172 3.1821 0.8149 26 1 2.3618 4.2615 0.9722 27 1 2.6799 4.6154 -3.2863 28 1 5.6995 -1.2229 -0.0021 29 1 5.2079 -3.6212 -0.0014 30 1 2.8465 -4.3947 -0.0002 31 1 1.0352 -2.7866 -0.0023 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260456614.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:31 Heat of formation + Delta-G solvation = 58.828727 kcal Electronic energy + Delta-G solvation = -15755.736602 eV Core-core repulsion = 13230.030925 eV Total energy + Delta-G solvation = -2525.705677 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.69341 -38.62054 -36.44182 -34.81414 -33.84456 -31.98779 -30.72485 -28.14983 -27.21592 -25.02376 -23.58866 -22.64217 -20.83222 -19.85082 -18.10249 -17.86374 -16.96900 -16.87640 -16.23452 -15.62854 -15.41807 -14.99381 -14.46334 -14.28065 -14.05362 -13.86043 -13.48647 -13.06950 -12.95492 -12.52398 -12.48221 -12.12108 -11.88458 -11.77415 -11.39704 -10.88866 -10.69107 -9.67810 -9.44391 -8.76048 -8.55586 -6.50593 -0.07387 0.39807 1.44793 1.50608 1.71342 1.73470 1.99463 2.43404 2.67028 2.97006 3.38905 3.59717 3.85715 4.06612 4.12687 4.22898 4.27606 4.39355 4.61437 4.68620 4.71802 5.01062 5.09363 5.10301 5.25415 5.32685 5.66078 5.70362 5.82554 5.89880 6.30594 6.32049 6.51950 6.77478 7.09146 7.30137 8.50957 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.042240 B = 0.007505 C = 0.007049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.716022 B = 3729.765689 C = 3971.233573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.095 4.095 3 C 0.079 3.921 4 C 0.260 3.740 5 H 0.060 0.940 6 N -0.843 5.843 7 C -0.618 4.618 8 H -0.002 1.002 9 C -0.017 4.017 10 N -0.930 5.930 11 Si 1.087 2.913 12 H -0.285 1.285 13 H -0.254 1.254 14 H -0.240 1.240 15 N -0.536 5.536 16 C 0.188 3.812 17 C -0.114 4.114 18 C -0.082 4.082 19 C -0.141 4.141 20 C 0.039 3.961 21 N -0.365 5.365 22 H 0.069 0.931 23 H 0.094 0.906 24 H 0.080 0.920 25 H 0.329 0.671 26 H 0.330 0.670 27 H 0.249 0.751 28 H 0.151 0.849 29 H 0.182 0.818 30 H 0.196 0.804 31 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.108 -18.588 8.203 20.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.207 4.207 3 C -0.053 4.053 4 C 0.148 3.852 5 H 0.077 0.923 6 N -0.373 5.373 7 C -0.657 4.657 8 H 0.017 0.983 9 C -0.216 4.216 10 N -0.565 5.565 11 Si 0.906 3.094 12 H -0.211 1.211 13 H -0.179 1.179 14 H -0.165 1.165 15 N -0.257 5.257 16 C -0.055 4.055 17 C -0.134 4.134 18 C -0.106 4.106 19 C -0.161 4.161 20 C -0.083 4.083 21 N -0.038 5.038 22 H 0.088 0.912 23 H 0.112 0.888 24 H 0.099 0.901 25 H 0.140 0.860 26 H 0.145 0.855 27 H 0.057 0.943 28 H 0.168 0.832 29 H 0.199 0.801 30 H 0.213 0.787 31 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -2.771 -17.170 8.938 19.555 hybrid contribution 1.225 -0.854 -1.909 2.424 sum -1.546 -18.024 7.029 19.408 Atomic orbital electron populations 1.20188 0.84302 1.04315 1.02975 1.21295 0.95995 0.84536 1.18920 1.20915 0.88554 0.96219 0.99632 1.17582 0.93649 0.84733 0.89189 0.92277 1.59683 1.09465 1.14657 1.53540 1.22649 1.42251 1.02228 0.98619 0.98349 1.27473 0.99571 0.95015 0.99504 1.70961 1.29178 1.40019 1.16309 0.83535 0.75368 0.75733 0.74750 1.21076 1.17867 1.16482 1.70447 1.22745 1.07987 1.24486 1.21621 0.85834 0.90953 1.07098 1.20529 0.96755 0.92049 1.04098 1.21522 0.98587 0.94130 0.96313 1.21365 0.91042 1.01555 1.02174 1.22406 1.03881 0.79276 1.02706 1.42800 1.08038 1.06573 1.46371 0.91213 0.88778 0.90093 0.86025 0.85533 0.94276 0.83178 0.80082 0.78661 0.79268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.84 10.04 71.24 0.72 -1.13 16 2 C -0.10 -3.88 7.03 41.06 0.29 -3.59 16 3 C 0.08 3.92 5.82 41.58 0.24 4.16 16 4 C 0.26 13.46 2.63 43.42 0.11 13.57 16 5 H 0.06 2.90 5.51 -2.39 -0.01 2.88 16 6 N -0.84 -41.38 9.24 -174.94 -1.62 -43.00 16 7 C -0.62 -37.68 9.06 25.60 0.23 -37.45 16 8 H 0.00 -0.14 7.99 -2.91 -0.02 -0.16 16 9 C -0.02 -1.02 5.38 84.65 0.46 -0.57 16 10 N -0.93 -60.02 13.69 21.44 0.29 -59.73 16 11 Si 1.09 49.53 26.40 68.60 1.81 51.34 16 12 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 13 H -0.25 -10.48 7.11 99.48 0.71 -9.77 16 14 H -0.24 -9.72 5.69 99.48 0.57 -9.16 16 15 N -0.54 -26.77 11.02 -182.41 -2.01 -28.78 16 16 C 0.19 7.60 7.81 134.11 1.05 8.64 16 17 C -0.11 -3.34 10.11 22.42 0.23 -3.11 16 18 C -0.08 -1.54 10.07 22.30 0.22 -1.31 16 19 C -0.14 -2.29 9.99 22.06 0.22 -2.07 16 20 C 0.04 0.88 10.85 83.21 0.90 1.78 16 21 N -0.36 -12.90 2.94 -338.88 -1.00 -13.90 16 22 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 23 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 24 H 0.08 2.52 7.00 -2.39 -0.02 2.50 16 25 H 0.33 16.88 8.71 -89.70 -0.78 16.10 16 26 H 0.33 15.58 5.47 -89.69 -0.49 15.09 16 27 H 0.25 16.63 8.73 -92.70 -0.81 15.82 16 28 H 0.15 4.01 8.06 -2.91 -0.02 3.99 16 29 H 0.18 1.76 8.06 -2.91 -0.02 1.73 16 30 H 0.20 1.21 8.06 -2.91 -0.02 1.19 16 31 H 0.19 2.81 8.06 -2.91 -0.02 2.79 16 Total: -1.00 -82.20 263.91 1.86 -80.34 By element: Atomic # 1 Polarization: 35.09 SS G_CDS: -0.29 Total: 34.80 kcal Atomic # 6 Polarization: -25.74 SS G_CDS: 4.67 Total: -21.07 kcal Atomic # 7 Polarization: -141.08 SS G_CDS: -4.33 Total: -145.42 kcal Atomic # 14 Polarization: 49.53 SS G_CDS: 1.81 Total: 51.34 kcal Total: -82.20 1.86 -80.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260456614.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.172 kcal (2) G-P(sol) polarization free energy of solvation -82.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds