Wall clock time and date at job start Mon Mar 30 2020 03:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47237 * 2 1 4 4 C 1.50704 * 109.47506 * 119.99786 * 2 1 3 5 5 C 1.40339 * 120.25567 * 300.02738 * 4 2 1 6 6 N 1.31143 * 120.28988 * 179.97438 * 5 4 2 7 7 C 1.34254 * 120.83940 * 359.97438 * 6 5 4 8 8 C 1.38280 * 132.14625 * 180.02562 * 7 6 5 9 9 C 1.40927 * 107.56166 * 179.97438 * 8 7 6 10 10 C 1.41515 * 125.83672 * 180.02562 * 9 8 7 11 11 H 1.07999 * 120.00121 * 0.02562 * 10 9 8 12 12 C 1.39897 * 119.99682 * 180.02562 * 10 9 8 13 13 N 1.30853 * 120.00203 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99827 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46996 * 59.99703 * 14 12 10 16 16 H 1.48503 * 109.47296 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47117 * 299.99701 * 14 12 10 18 18 N 1.33221 * 108.32146 * 359.97438 * 9 8 7 19 19 N 1.37445 * 120.45978 * 0.02562 * 7 6 5 20 20 C 1.35545 * 120.25373 * 119.99719 * 4 2 1 21 21 H 1.08993 * 109.47122 * 59.99592 * 1 2 3 22 22 H 1.09001 * 109.47092 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46937 * 299.99954 * 1 2 3 24 24 H 1.08999 * 109.46937 * 240.00046 * 2 1 3 25 25 H 1.08997 * 109.46939 * 180.02562 * 3 2 1 26 26 H 1.09003 * 109.46683 * 300.00023 * 3 2 1 27 27 H 1.08999 * 109.46665 * 59.99878 * 3 2 1 28 28 H 1.07994 * 119.85202 * 359.97438 * 5 4 2 29 29 H 1.07995 * 126.21631 * 359.97438 * 8 7 6 30 30 H 0.96995 * 119.99819 * 180.02562 * 13 12 10 31 31 H 1.08002 * 120.41376 * 0.29928 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0325 -0.7104 1.2305 5 6 1.6963 -0.2358 2.5077 6 7 2.1327 -0.8538 3.5790 7 6 2.9052 -1.9470 3.4762 8 6 3.4839 -2.7670 4.4274 9 6 4.1951 -3.7740 3.7447 10 6 4.9332 -4.8205 4.3469 11 1 4.9846 -4.8952 5.4231 12 6 5.5964 -5.7583 3.5482 13 7 5.5337 -5.6681 2.2443 14 14 6.5713 -7.1393 4.3432 15 1 5.6670 -7.9617 5.1866 16 1 7.1736 -7.9918 3.2869 17 1 7.6477 -6.5626 5.1881 18 7 4.0529 -3.5730 2.4354 19 7 3.2543 -2.4399 2.2415 20 6 2.8120 -1.8129 1.1121 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.0755 0.6420 2.6088 29 1 3.4051 -2.6559 5.4987 30 1 5.9932 -6.3186 1.6906 31 1 3.0834 -2.1884 0.1365 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260488996.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:29 Heat of formation + Delta-G solvation = 89.890681 kcal Electronic energy + Delta-G solvation = -15414.509516 eV Core-core repulsion = 12890.150786 eV Total energy + Delta-G solvation = -2524.358730 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.77009 -37.45748 -34.93422 -33.52707 -32.31445 -29.17355 -27.65700 -27.04566 -26.12853 -23.42518 -22.37787 -20.27005 -19.75630 -17.54845 -16.55601 -15.80905 -14.99198 -14.87388 -14.63825 -13.94131 -13.64459 -13.11017 -12.93337 -12.58441 -12.25430 -12.18976 -11.49515 -11.33183 -11.18675 -11.15001 -11.01592 -10.81935 -10.68652 -10.23162 -10.09572 -9.46823 -9.23208 -8.44950 -7.93102 -6.64488 -6.62022 -4.60087 1.62486 2.02835 3.04229 3.09442 3.12273 3.59128 3.96635 4.09660 4.46361 4.84192 4.98657 5.01232 5.24956 5.32756 5.40908 5.50228 5.68471 5.71287 5.87422 5.89862 6.07531 6.18705 6.34262 6.34998 6.58629 6.75578 6.93063 7.14038 7.18973 7.42874 7.76463 8.23603 8.61088 8.71672 8.86602 9.47126 10.30795 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.055199 B = 0.006012 C = 0.005624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.136041 B = 4656.434395 C = 4977.804330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.025 4.025 3 C -0.143 4.143 4 C -0.255 4.255 5 C 0.167 3.833 6 N -0.489 5.489 7 C 0.220 3.780 8 C -0.297 4.297 9 C 0.233 3.767 10 C -0.427 4.427 11 H 0.091 0.909 12 C 0.069 3.931 13 N -0.759 5.759 14 Si 0.918 3.082 15 H -0.264 1.264 16 H -0.279 1.279 17 H -0.264 1.264 18 N -0.330 5.330 19 N -0.321 5.321 20 C 0.179 3.821 21 H 0.053 0.947 22 H 0.054 0.946 23 H 0.055 0.945 24 H 0.073 0.927 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.153 0.847 29 H 0.134 0.866 30 H 0.278 0.722 31 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.450 7.724 -4.913 10.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.045 4.045 3 C -0.200 4.200 4 C -0.263 4.263 5 C -0.019 4.019 6 N -0.201 5.201 7 C 0.001 3.999 8 C -0.328 4.328 9 C 0.088 3.912 10 C -0.465 4.465 11 H 0.109 0.891 12 C -0.153 4.153 13 N -0.385 5.385 14 Si 0.742 3.258 15 H -0.189 1.189 16 H -0.204 1.204 17 H -0.189 1.189 18 N -0.164 5.164 19 N -0.087 5.087 20 C 0.037 3.963 21 H 0.072 0.928 22 H 0.073 0.927 23 H 0.074 0.926 24 H 0.091 0.909 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.170 0.830 29 H 0.152 0.848 30 H 0.089 0.911 31 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -5.110 7.243 -5.192 10.272 hybrid contribution 0.412 -0.583 0.225 0.748 sum -4.697 6.660 -4.967 9.544 Atomic orbital electron populations 1.21852 0.94884 1.01867 1.01430 1.19650 0.95280 0.95297 0.94264 1.21855 1.01237 0.95513 1.01429 1.19772 1.08952 1.00669 0.96917 1.22690 0.94929 0.97094 0.87195 1.68124 1.12563 1.07571 1.31846 1.20485 0.98762 0.93751 0.86932 1.21054 1.12907 1.01361 0.97515 1.19454 0.90727 0.91842 0.89129 1.18848 1.26490 1.06821 0.94308 0.89119 1.25985 0.95908 0.98730 0.94716 1.69899 1.32190 1.31771 1.04618 0.86211 0.80006 0.80114 0.79455 1.18886 1.20357 1.18881 1.79530 1.20775 0.99786 1.16355 1.47894 1.34249 1.21939 1.04602 1.21483 0.92710 0.91199 0.90927 0.92754 0.92683 0.92559 0.90867 0.92685 0.92762 0.92552 0.82978 0.84805 0.91114 0.82681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.01 37.16 0.33 -1.16 16 2 C -0.02 -0.30 3.10 -91.77 -0.28 -0.58 16 3 C -0.14 -1.50 9.01 37.16 0.33 -1.16 16 4 C -0.25 -4.19 4.74 -104.79 -0.50 -4.69 16 5 C 0.17 2.92 9.98 -17.06 -0.17 2.75 16 6 N -0.49 -10.78 10.49 -12.22 -0.13 -10.91 16 7 C 0.22 5.56 7.89 -155.22 -1.22 4.34 16 8 C -0.30 -7.87 10.87 -38.55 -0.42 -8.29 16 9 C 0.23 6.67 6.73 -85.00 -0.57 6.10 16 10 C -0.43 -11.71 9.39 -37.71 -0.35 -12.06 16 11 H 0.09 2.29 7.84 -52.49 -0.41 1.88 16 12 C 0.07 1.79 5.49 -17.35 -0.10 1.69 16 13 N -0.76 -20.81 11.92 55.54 0.66 -20.15 16 14 Si 0.92 18.96 29.56 -169.99 -5.02 13.94 16 15 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 16 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 17 H -0.26 -5.35 7.11 56.52 0.40 -4.94 16 18 N -0.33 -9.51 10.88 32.16 0.35 -9.16 16 19 N -0.32 -8.08 3.89 -12.20 -0.05 -8.12 16 20 C 0.18 3.57 10.91 -16.42 -0.18 3.39 16 21 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 22 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.06 0.57 7.43 -51.93 -0.39 0.18 16 24 H 0.07 0.82 7.87 -51.93 -0.41 0.41 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.57 7.43 -51.93 -0.39 0.18 16 28 H 0.15 2.07 7.19 -52.49 -0.38 1.69 16 29 H 0.13 3.25 8.06 -52.49 -0.42 2.83 16 30 H 0.28 6.92 8.30 -40.82 -0.34 6.58 16 31 H 0.16 2.70 7.94 -52.49 -0.42 2.29 16 LS Contribution 269.83 15.07 4.07 4.07 Total: -1.00 -31.70 269.83 -6.88 -38.59 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -3.63 Total: 1.43 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: -3.13 Total: -9.67 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: 0.84 Total: -48.34 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.02 Total: 13.94 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -31.70 -6.88 -38.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260488996.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.476 kcal (2) G-P(sol) polarization free energy of solvation -31.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds