Wall clock time and date at job start Mon Mar 30 2020 03:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47237 * 2 1 4 4 C 1.50704 * 109.47506 * 119.99786 * 2 1 3 5 5 C 1.40339 * 120.25567 * 300.02738 * 4 2 1 6 6 N 1.31143 * 120.28988 * 179.97438 * 5 4 2 7 7 C 1.34254 * 120.83940 * 359.97438 * 6 5 4 8 8 C 1.38280 * 132.14625 * 180.02562 * 7 6 5 9 9 C 1.40927 * 107.56166 * 179.97438 * 8 7 6 10 10 C 1.41515 * 125.83672 * 180.02562 * 9 8 7 11 11 H 1.07999 * 120.00121 * 0.02562 * 10 9 8 12 12 C 1.39897 * 119.99682 * 180.02562 * 10 9 8 13 13 N 1.30853 * 120.00203 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99827 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46996 * 59.99703 * 14 12 10 16 16 H 1.48503 * 109.47296 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47117 * 299.99701 * 14 12 10 18 18 N 1.33221 * 108.32146 * 359.97438 * 9 8 7 19 19 N 1.37445 * 120.45978 * 0.02562 * 7 6 5 20 20 C 1.35545 * 120.25373 * 119.99719 * 4 2 1 21 21 H 1.08993 * 109.47122 * 59.99592 * 1 2 3 22 22 H 1.09001 * 109.47092 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46937 * 299.99954 * 1 2 3 24 24 H 1.08999 * 109.46937 * 240.00046 * 2 1 3 25 25 H 1.08997 * 109.46939 * 180.02562 * 3 2 1 26 26 H 1.09003 * 109.46683 * 300.00023 * 3 2 1 27 27 H 1.08999 * 109.46665 * 59.99878 * 3 2 1 28 28 H 1.07994 * 119.85202 * 359.97438 * 5 4 2 29 29 H 1.07995 * 126.21631 * 359.97438 * 8 7 6 30 30 H 0.96995 * 119.99819 * 180.02562 * 13 12 10 31 31 H 1.08002 * 120.41376 * 0.29928 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0325 -0.7104 1.2305 5 6 1.6963 -0.2358 2.5077 6 7 2.1327 -0.8538 3.5790 7 6 2.9052 -1.9470 3.4762 8 6 3.4839 -2.7670 4.4274 9 6 4.1951 -3.7740 3.7447 10 6 4.9332 -4.8205 4.3469 11 1 4.9846 -4.8952 5.4231 12 6 5.5964 -5.7583 3.5482 13 7 5.5337 -5.6681 2.2443 14 14 6.5713 -7.1393 4.3432 15 1 5.6670 -7.9617 5.1866 16 1 7.1736 -7.9918 3.2869 17 1 7.6477 -6.5626 5.1881 18 7 4.0529 -3.5730 2.4354 19 7 3.2543 -2.4399 2.2415 20 6 2.8120 -1.8129 1.1121 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.0755 0.6420 2.6088 29 1 3.4051 -2.6559 5.4987 30 1 5.9932 -6.3186 1.6906 31 1 3.0834 -2.1884 0.1365 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260488996.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:29 Heat of formation + Delta-G solvation = 70.088596 kcal Electronic energy + Delta-G solvation = -15415.368199 eV Core-core repulsion = 12890.150786 eV Total energy + Delta-G solvation = -2525.217412 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.55331 -39.05469 -36.34712 -35.38829 -34.03695 -30.86394 -29.51555 -27.95821 -27.86325 -25.09037 -23.99460 -21.90495 -21.32578 -19.32679 -18.37310 -17.42627 -16.64279 -16.43727 -16.40789 -15.24184 -14.97057 -14.62456 -14.11597 -14.10730 -14.00682 -13.28158 -12.98865 -12.93467 -12.84464 -12.72014 -12.20201 -12.12270 -11.93784 -11.76415 -11.75814 -11.18893 -10.98708 -10.29389 -9.80445 -8.55762 -8.51052 -6.63718 -0.01134 0.33944 1.40532 1.40884 1.54880 1.86673 2.18226 2.24208 2.73897 3.26313 3.39267 3.58641 3.75683 3.93415 4.16663 4.40476 4.53793 4.66768 4.76665 4.94244 4.98040 5.04083 5.10921 5.16017 5.21488 5.29579 5.46710 5.51383 5.53297 5.54663 5.93202 6.31758 6.64375 6.82269 7.03167 7.49639 8.42407 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.055199 B = 0.006012 C = 0.005624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.136041 B = 4656.434395 C = 4977.804330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.025 4.025 3 C -0.142 4.142 4 C -0.214 4.214 5 C 0.181 3.819 6 N -0.511 5.511 7 C 0.223 3.777 8 C -0.346 4.346 9 C 0.207 3.793 10 C -0.466 4.466 11 H 0.098 0.902 12 C 0.023 3.977 13 N -0.802 5.802 14 Si 1.001 2.999 15 H -0.256 1.256 16 H -0.269 1.269 17 H -0.256 1.256 18 N -0.373 5.373 19 N -0.337 5.337 20 C 0.144 3.856 21 H 0.081 0.919 22 H 0.042 0.958 23 H 0.064 0.936 24 H 0.084 0.916 25 H 0.042 0.958 26 H 0.081 0.919 27 H 0.064 0.936 28 H 0.206 0.794 29 H 0.138 0.862 30 H 0.284 0.716 31 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.683 9.471 -6.143 13.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.045 4.045 3 C -0.199 4.199 4 C -0.222 4.222 5 C -0.003 4.003 6 N -0.224 5.224 7 C 0.001 3.999 8 C -0.378 4.378 9 C 0.062 3.938 10 C -0.503 4.503 11 H 0.116 0.884 12 C -0.195 4.195 13 N -0.429 5.429 14 Si 0.820 3.180 15 H -0.180 1.180 16 H -0.193 1.193 17 H -0.180 1.180 18 N -0.208 5.208 19 N -0.104 5.104 20 C 0.005 3.995 21 H 0.100 0.900 22 H 0.061 0.939 23 H 0.083 0.917 24 H 0.102 0.898 25 H 0.061 0.939 26 H 0.100 0.900 27 H 0.084 0.916 28 H 0.222 0.778 29 H 0.156 0.844 30 H 0.094 0.906 31 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -6.372 9.031 -6.473 12.809 hybrid contribution 0.542 -0.766 0.387 1.015 sum -5.830 8.265 -6.086 11.804 Atomic orbital electron populations 1.21856 0.92961 1.01737 1.03337 1.19866 0.96656 0.95978 0.91977 1.21858 1.00550 0.94149 1.03334 1.20492 1.04752 0.98107 0.98814 1.23705 0.92951 0.97110 0.86513 1.68252 1.13242 1.07130 1.33727 1.20644 0.98301 0.94127 0.86819 1.21123 1.15665 1.02853 0.98144 1.19854 0.91472 0.92827 0.89655 1.19267 1.28011 1.07993 0.95045 0.88446 1.27038 0.96349 1.01053 0.95054 1.70014 1.33400 1.33127 1.06323 0.84976 0.78258 0.76211 0.78506 1.17992 1.19298 1.17985 1.79302 1.22752 1.01959 1.16777 1.47977 1.34656 1.21792 1.05939 1.22260 0.94026 0.92474 0.90696 0.90022 0.93874 0.91654 0.89756 0.93869 0.90031 0.91647 0.77795 0.84413 0.90578 0.80871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.01 71.98 0.65 -1.61 16 2 C -0.02 -0.48 3.10 -11.54 -0.04 -0.52 16 3 C -0.14 -2.26 9.01 71.98 0.65 -1.61 16 4 C -0.21 -6.45 4.74 -19.97 -0.09 -6.54 16 5 C 0.18 5.77 9.98 85.31 0.85 6.62 16 6 N -0.51 -22.05 10.49 -192.57 -2.02 -24.07 16 7 C 0.22 11.60 7.89 132.82 1.05 12.65 16 8 C -0.35 -19.47 10.87 22.94 0.25 -19.22 16 9 C 0.21 12.58 6.73 40.40 0.27 12.86 16 10 C -0.47 -26.97 9.39 23.48 0.22 -26.75 16 11 H 0.10 5.22 7.84 -2.91 -0.02 5.19 16 12 C 0.02 1.23 5.49 85.24 0.47 1.70 16 13 N -0.80 -45.84 11.92 21.82 0.26 -45.58 16 14 Si 1.00 39.77 29.56 68.60 2.03 41.80 16 15 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 16 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 17 H -0.26 -9.71 7.11 99.48 0.71 -9.01 16 18 N -0.37 -22.66 10.88 -52.16 -0.57 -23.23 16 19 N -0.34 -17.47 3.89 -192.52 -0.75 -18.22 16 20 C 0.14 5.67 10.91 83.34 0.91 6.58 16 21 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 22 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 23 H 0.06 0.94 7.43 -2.39 -0.02 0.92 16 24 H 0.08 1.54 7.87 -2.39 -0.02 1.52 16 25 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.06 0.94 7.43 -2.39 -0.02 0.92 16 28 H 0.21 4.37 7.19 -2.91 -0.02 4.35 16 29 H 0.14 7.21 8.06 -2.91 -0.02 7.18 16 30 H 0.28 14.62 8.30 -92.71 -0.77 13.85 16 31 H 0.17 5.97 7.94 -2.91 -0.02 5.94 16 Total: -1.00 -74.50 269.83 5.27 -69.24 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: 1.13 Total: 15.91 kcal Atomic # 6 Polarization: -21.04 SS G_CDS: 5.19 Total: -15.86 kcal Atomic # 7 Polarization: -108.02 SS G_CDS: -3.08 Total: -111.10 kcal Atomic # 14 Polarization: 39.77 SS G_CDS: 2.03 Total: 41.80 kcal Total: -74.50 5.27 -69.24 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260488996.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.328 kcal (2) G-P(sol) polarization free energy of solvation -74.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds