Wall clock time and date at job start Mon Mar 30 2020 02:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30900 * 125.31303 * 2 1 4 4 C 1.33403 * 109.86683 * 180.02562 * 3 2 1 5 5 C 1.37992 * 107.46225 * 0.02562 * 4 3 2 6 6 C 1.40970 * 133.70755 * 179.97438 * 5 4 3 7 7 C 1.35884 * 119.17595 * 179.75868 * 6 5 4 8 8 C 1.40814 * 119.76788 * 0.49092 * 7 6 5 9 9 C 1.50696 * 119.69040 * 179.75725 * 8 7 6 10 10 H 1.09001 * 109.47279 * 199.71844 * 9 8 7 11 11 N 1.46901 * 109.47431 * 319.72658 * 9 8 7 12 12 C 1.50705 * 109.46882 * 79.72409 * 9 8 7 13 13 H 1.07997 * 120.00483 * 354.54239 * 12 9 8 14 14 C 1.37884 * 119.99729 * 174.53713 * 12 9 8 15 15 N 1.31515 * 119.99864 * 163.78684 * 14 12 9 16 16 Si 1.86804 * 120.00214 * 343.51474 * 14 12 9 17 17 H 1.48499 * 109.46985 * 180.27495 * 16 14 12 18 18 H 1.48501 * 109.46706 * 300.27614 * 16 14 12 19 19 H 1.48504 * 109.46965 * 60.27152 * 16 14 12 20 20 C 1.34675 * 120.61696 * 359.47880 * 8 7 6 21 21 N 1.35034 * 125.31269 * 180.02562 * 2 1 3 22 22 H 1.08996 * 109.46957 * 269.97306 * 1 2 3 23 23 H 1.09003 * 109.46937 * 29.97607 * 1 2 3 24 24 H 1.08995 * 109.47065 * 149.97616 * 1 2 3 25 25 H 1.08003 * 126.26834 * 179.97438 * 4 3 2 26 26 H 1.08001 * 120.41620 * 359.97438 * 6 5 4 27 27 H 1.07993 * 120.11584 * 180.24811 * 7 6 5 28 28 H 1.00899 * 110.99589 * 65.82267 * 11 9 8 29 29 H 1.00890 * 110.99952 * 189.78021 * 11 9 8 30 30 H 0.96997 * 119.99861 * 354.27411 * 15 14 12 31 31 H 1.08001 * 119.71465 * 180.25575 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2637 1.0682 0.0000 4 6 3.5495 0.7129 -0.0006 5 6 3.5981 -0.6662 -0.0015 6 6 4.6508 -1.6038 -0.0029 7 6 4.3563 -2.9304 0.0014 8 6 3.0115 -3.3480 -0.0033 9 6 2.6870 -4.8196 -0.0041 10 1 1.6653 -4.9662 -0.3545 11 7 3.6166 -5.5257 -0.8958 12 6 2.8213 -5.3643 1.3947 13 1 3.1969 -4.7330 2.1863 14 6 2.4644 -6.6687 1.6637 15 7 2.8667 -7.2445 2.7756 16 14 1.4033 -7.6156 0.4525 17 1 1.1574 -8.9840 0.9744 18 1 0.1071 -6.9129 0.2755 19 1 2.1019 -7.7025 -0.8550 20 6 2.0127 -2.4446 -0.0016 21 7 2.2876 -1.1019 -0.0005 22 1 -0.3633 -0.0005 1.0276 23 1 -0.3633 0.8902 -0.5135 24 1 -0.3633 -0.8897 -0.5142 25 1 4.3973 1.3820 -0.0011 26 1 5.6785 -1.2720 -0.0038 27 1 5.1508 -3.6618 0.0045 28 1 4.5600 -5.4849 -0.5402 29 1 3.3251 -6.4809 -1.0390 30 1 3.4815 -6.7820 3.3663 31 1 0.9865 -2.7812 -0.0011 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260504557.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:39 Heat of formation + Delta-G solvation = 77.969525 kcal Electronic energy + Delta-G solvation = -15632.809304 eV Core-core repulsion = 13107.933634 eV Total energy + Delta-G solvation = -2524.875670 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.38820 -37.69934 -34.66072 -33.20675 -32.06806 -30.64517 -29.57094 -26.43217 -25.64953 -23.42023 -22.20586 -21.13052 -19.66925 -17.92886 -16.90935 -16.20594 -15.81135 -15.64750 -14.51969 -14.13652 -13.87243 -13.25382 -13.07472 -12.97636 -12.78792 -12.53887 -12.30081 -12.04987 -11.28341 -11.20462 -10.98020 -10.40102 -10.26090 -10.18642 -9.96283 -9.46441 -8.71351 -8.61517 -7.77590 -7.02659 -6.64767 -4.42663 1.29270 1.76040 3.01330 3.13551 3.23648 3.35043 3.39874 3.91884 4.22334 4.66567 4.85116 4.99403 5.06072 5.23520 5.41331 5.47252 5.58818 5.62495 5.72361 5.91642 5.94607 6.20436 6.23588 6.42686 6.68710 6.84948 7.03796 7.05840 7.55616 7.61472 8.02385 8.17629 8.22312 8.32041 8.63022 9.29533 10.63336 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.036139 B = 0.007413 C = 0.006807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.602040 B = 3776.177712 C = 4112.267214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.140 3.860 3 N -0.459 5.459 4 C -0.041 4.041 5 C 0.004 3.996 6 C -0.100 4.100 7 C -0.083 4.083 8 C -0.024 4.024 9 C 0.221 3.779 10 H 0.045 0.955 11 N -0.857 5.857 12 C -0.632 4.632 13 H 0.059 0.941 14 C 0.036 3.964 15 N -0.891 5.891 16 Si 1.042 2.958 17 H -0.281 1.281 18 H -0.281 1.281 19 H -0.274 1.274 20 C 0.012 3.988 21 N -0.348 5.348 22 H 0.075 0.925 23 H 0.086 0.914 24 H 0.070 0.930 25 H 0.174 0.826 26 H 0.139 0.861 27 H 0.134 0.866 28 H 0.329 0.671 29 H 0.333 0.667 30 H 0.272 0.728 31 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.641 8.196 -6.387 10.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.114 4.114 3 N -0.174 5.174 4 C -0.196 4.196 5 C -0.107 4.107 6 C -0.119 4.119 7 C -0.105 4.105 8 C -0.027 4.027 9 C 0.110 3.890 10 H 0.063 0.937 11 N -0.388 5.388 12 C -0.671 4.671 13 H 0.077 0.923 14 C -0.171 4.171 15 N -0.524 5.524 16 Si 0.869 3.131 17 H -0.207 1.207 18 H -0.207 1.207 19 H -0.200 1.200 20 C -0.108 4.108 21 N -0.018 5.018 22 H 0.093 0.907 23 H 0.104 0.896 24 H 0.089 0.911 25 H 0.191 0.809 26 H 0.157 0.843 27 H 0.152 0.848 28 H 0.141 0.859 29 H 0.148 0.852 30 H 0.082 0.918 31 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -2.149 8.088 -7.145 11.004 hybrid contribution 1.366 -0.017 1.301 1.887 sum -0.783 8.071 -5.844 9.995 Atomic orbital electron populations 1.20058 0.85020 1.03534 1.03119 1.22946 0.95444 0.79806 1.13209 1.69831 1.02574 1.27766 1.17202 1.22310 0.94389 0.90456 1.12449 1.19685 0.84292 0.95343 1.11378 1.20433 0.97358 0.91761 1.02397 1.20992 0.96757 0.95072 0.97646 1.19759 0.91799 0.97028 0.94117 1.18176 0.92891 0.85140 0.92769 0.93681 1.59680 1.06288 1.20301 1.52572 1.22555 1.50585 0.99258 0.94743 0.92291 1.25843 0.96888 0.95092 0.99288 1.70817 1.29994 1.39388 1.12157 0.84038 0.76895 0.76903 0.75237 1.20677 1.20668 1.20023 1.21277 1.01071 0.79448 1.08959 1.42630 1.07810 1.06112 1.45218 0.90680 0.89558 0.91081 0.80889 0.84278 0.84843 0.85888 0.85214 0.91813 0.82464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.75 10.33 36.01 0.37 -0.37 16 2 C 0.14 2.41 7.96 -155.09 -1.23 1.18 16 3 N -0.46 -8.26 11.19 -10.11 -0.11 -8.38 16 4 C -0.04 -0.69 12.02 -16.96 -0.20 -0.89 16 5 C 0.00 0.07 6.80 -84.09 -0.57 -0.51 16 6 C -0.10 -1.64 10.11 -39.39 -0.40 -2.04 16 7 C -0.08 -1.51 9.32 -39.45 -0.37 -1.88 16 8 C -0.02 -0.47 4.86 -104.91 -0.51 -0.98 16 9 C 0.22 4.79 2.46 -70.02 -0.17 4.61 16 10 H 0.05 0.98 6.62 -51.93 -0.34 0.64 16 11 N -0.86 -17.16 8.94 -6.65 -0.06 -17.22 16 12 C -0.63 -16.21 8.95 -34.44 -0.31 -16.52 16 13 H 0.06 1.69 7.99 -52.49 -0.42 1.27 16 14 C 0.04 0.96 5.43 -17.82 -0.10 0.87 16 15 N -0.89 -25.52 13.69 55.43 0.76 -24.77 16 16 Si 1.04 22.72 26.54 -169.99 -4.51 18.21 16 17 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 19 H -0.27 -5.37 5.55 56.52 0.31 -5.05 16 20 C 0.01 0.23 10.39 -16.48 -0.17 0.05 16 21 N -0.35 -6.39 2.94 -58.16 -0.17 -6.57 16 22 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 23 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.07 0.81 8.04 -51.93 -0.42 0.39 16 25 H 0.17 2.32 8.06 -52.48 -0.42 1.90 16 26 H 0.14 1.79 8.06 -52.49 -0.42 1.36 16 27 H 0.13 2.27 6.83 -52.49 -0.36 1.91 16 28 H 0.33 6.36 7.54 -39.29 -0.30 6.06 16 29 H 0.33 6.69 5.69 -39.30 -0.22 6.47 16 30 H 0.27 7.82 8.73 -40.82 -0.36 7.47 16 31 H 0.16 2.64 7.89 -52.49 -0.41 2.22 16 LS Contribution 263.44 15.07 3.97 3.97 Total: -1.00 -29.79 263.44 -7.19 -36.98 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -3.40 Total: 14.25 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: -3.66 Total: -16.48 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: 0.42 Total: -56.93 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -4.51 Total: 18.21 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.79 -7.19 -36.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260504557.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.952 kcal (2) G-P(sol) polarization free energy of solvation -29.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds