Wall clock time and date at job start Mon Mar 30 2020 03:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46897 * 110.99975 * 2 1 4 4 C 1.38935 * 110.99558 * 123.94664 * 2 1 3 5 5 C 1.39427 * 121.04472 * 300.00099 * 4 2 1 6 6 C 1.38107 * 119.17490 * 179.97438 * 5 4 2 7 7 N 1.31806 * 121.62761 * 359.97438 * 6 5 4 8 8 C 1.32839 * 121.93424 * 0.02562 * 7 6 5 9 9 N 1.37882 * 132.49150 * 180.02562 * 8 7 6 10 10 H 0.96991 * 124.63453 * 0.02562 * 9 8 7 11 11 C 1.35777 * 110.72492 * 179.97438 * 9 8 7 12 12 C 1.38964 * 109.19230 * 359.97438 * 11 9 8 13 13 C 1.40900 * 126.99407 * 179.97438 * 12 11 9 14 14 H 1.08000 * 119.99813 * 180.02562 * 13 12 11 15 15 C 1.39722 * 120.00361 * 0.02798 * 13 12 11 16 16 N 1.31063 * 119.99488 * 359.97438 * 15 13 12 17 17 Si 1.86792 * 120.00335 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46991 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47222 * 119.99562 * 17 15 13 20 20 H 1.48496 * 109.47440 * 239.99987 * 17 15 13 21 21 C 1.39989 * 121.03459 * 119.71989 * 4 2 1 22 22 H 1.09001 * 109.47442 * 300.00764 * 1 2 3 23 23 H 1.09005 * 109.47297 * 60.00433 * 1 2 3 24 24 H 1.08993 * 109.47695 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46932 * 179.97438 * 3 2 1 26 26 H 1.09001 * 109.47214 * 299.99580 * 3 2 1 27 27 H 1.08993 * 109.47751 * 59.99817 * 3 2 1 28 28 H 1.08007 * 120.40852 * 359.95427 * 5 4 2 29 29 H 1.08000 * 119.18385 * 179.97438 * 6 5 4 30 30 H 1.08003 * 125.40562 * 179.97438 * 11 9 8 31 31 H 0.97002 * 119.99555 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9668 -0.7243 1.0760 5 6 1.6668 -0.3605 2.3881 6 6 2.1819 -1.1083 3.4287 7 7 2.9497 -2.1576 3.2119 8 6 3.2699 -2.5524 1.9846 9 7 4.0391 -3.5948 1.5126 10 1 4.4932 -4.2428 2.0734 11 6 4.0728 -3.5908 0.1552 12 6 3.3132 -2.5274 -0.3175 13 6 3.0940 -2.1746 -1.6638 14 1 2.4798 -1.3195 -1.9048 15 6 3.6709 -2.9309 -2.6872 16 7 4.4166 -3.9683 -2.3947 17 14 3.3808 -2.4627 -4.4721 18 1 2.5102 -1.2612 -4.5334 19 1 4.6817 -2.1656 -5.1237 20 1 2.7193 -3.5892 -5.1782 21 6 2.7805 -1.8458 0.8765 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3634 -1.0276 0.0005 25 1 3.0851 1.3423 0.0005 26 1 1.6460 1.8947 -0.8900 27 1 1.6460 1.8948 0.8899 28 1 1.0395 0.4957 2.5882 29 1 1.9500 -0.8264 4.4451 30 1 4.6055 -4.3012 -0.4596 31 1 4.8168 -4.4936 -3.1052 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260549133.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:27 Heat of formation + Delta-G solvation = 76.407008 kcal Electronic energy + Delta-G solvation = -15992.999090 eV Core-core repulsion = 13468.055665 eV Total energy + Delta-G solvation = -2524.943425 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.13682 -37.56124 -35.83143 -33.38577 -30.67962 -28.98874 -27.89905 -27.15056 -24.94034 -24.10167 -21.44961 -20.84741 -19.41322 -17.30657 -15.88900 -15.74300 -15.35645 -14.58694 -14.42263 -14.06252 -13.66397 -13.46515 -13.01574 -12.52614 -12.01019 -11.98939 -11.43119 -11.29690 -11.25692 -11.10359 -10.95886 -10.92348 -10.12411 -9.67315 -9.45997 -8.75370 -8.47945 -7.82455 -7.33552 -6.69841 -6.46676 -3.95308 2.04569 2.38015 3.10706 3.20893 3.27949 4.09675 4.21239 4.22201 4.46378 4.81834 5.52237 5.58103 5.61062 5.68431 5.79602 5.90297 5.91350 6.06365 6.24724 6.26077 6.32015 6.52450 6.97426 7.00844 7.14878 7.38037 7.43685 7.73005 7.91377 8.09961 8.35440 8.54072 8.94509 9.11557 9.18536 9.30126 10.51259 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.024324 B = 0.011069 C = 0.007989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.830796 B = 2529.060768 C = 3504.184471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.495 5.495 3 C 0.036 3.964 4 C 0.183 3.817 5 C -0.280 4.280 6 C 0.121 3.879 7 N -0.524 5.524 8 C 0.263 3.737 9 N -0.569 5.569 10 H 0.398 0.602 11 C -0.101 4.101 12 C 0.036 3.964 13 C -0.395 4.395 14 H 0.091 0.909 15 C 0.049 3.951 16 N -0.834 5.834 17 Si 0.916 3.084 18 H -0.263 1.263 19 H -0.280 1.280 20 H -0.280 1.280 21 C -0.145 4.145 22 H 0.023 0.977 23 H 0.067 0.933 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.022 0.978 28 H 0.112 0.888 29 H 0.139 0.861 30 H 0.198 0.802 31 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.911 5.374 3.055 7.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.215 5.215 3 C -0.111 4.111 4 C 0.081 3.919 5 C -0.306 4.306 6 C -0.045 4.045 7 N -0.239 5.239 8 C 0.027 3.973 9 N -0.173 5.173 10 H 0.232 0.768 11 C -0.225 4.225 12 C 0.030 3.970 13 C -0.427 4.427 14 H 0.109 0.891 15 C -0.160 4.160 16 N -0.465 5.465 17 Si 0.743 3.257 18 H -0.187 1.187 19 H -0.206 1.206 20 H -0.206 1.206 21 C -0.155 4.155 22 H 0.041 0.959 23 H 0.085 0.915 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.041 0.959 28 H 0.130 0.870 29 H 0.156 0.844 30 H 0.214 0.786 31 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.188 4.355 3.048 6.198 hybrid contribution -0.500 0.737 -0.462 1.003 sum -3.688 5.091 2.586 6.798 Atomic orbital electron populations 1.22356 0.86648 1.02279 0.99898 1.59188 1.07453 1.13126 1.41713 1.22346 1.01127 0.87737 0.99869 1.18293 0.93546 0.92171 0.87884 1.21887 1.09790 1.04970 0.93977 1.21690 0.94272 0.90717 0.97849 1.66386 1.17573 1.17209 1.22746 1.18405 0.97517 0.92447 0.88926 1.41422 1.43573 1.24594 1.07684 0.76847 1.23511 1.13269 1.07366 0.78366 1.17999 0.95661 0.92463 0.90850 1.19080 1.24457 1.10501 0.88672 0.89124 1.25750 0.94576 0.94530 1.01183 1.69448 1.27717 1.15524 1.33809 0.86098 0.78506 0.79167 0.81931 1.18700 1.20552 1.20553 1.19879 1.02656 0.97110 0.95888 0.95868 0.91459 0.91335 0.91268 0.91452 0.95904 0.86982 0.84388 0.78605 0.91727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 9.29 60.06 0.56 1.13 16 2 N -0.49 -9.68 3.96 -186.59 -0.74 -10.42 16 3 C 0.04 0.59 9.34 60.06 0.56 1.15 16 4 C 0.18 3.97 4.72 -83.54 -0.39 3.57 16 5 C -0.28 -5.33 8.78 -39.19 -0.34 -5.67 16 6 C 0.12 2.32 11.13 -17.61 -0.20 2.13 16 7 N -0.52 -11.57 10.39 -12.36 -0.13 -11.70 16 8 C 0.26 6.33 8.39 -155.31 -1.30 5.03 16 9 N -0.57 -13.02 5.98 -11.29 -0.07 -13.08 16 10 H 0.40 7.69 8.96 -40.82 -0.37 7.32 16 11 C -0.10 -2.58 10.90 -15.54 -0.17 -2.75 16 12 C 0.04 0.97 6.10 -104.87 -0.64 0.33 16 13 C -0.39 -10.60 9.28 -38.02 -0.35 -10.95 16 14 H 0.09 2.40 6.93 -52.49 -0.36 2.04 16 15 C 0.05 1.26 5.49 -17.33 -0.10 1.16 16 16 N -0.83 -21.53 10.34 55.54 0.57 -20.95 16 17 Si 0.92 19.61 29.56 -169.99 -5.02 14.58 16 18 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 19 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 20 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 21 C -0.14 -3.62 6.30 -104.74 -0.66 -4.28 16 22 H 0.02 0.33 7.35 -51.93 -0.38 -0.05 16 23 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 24 H 0.07 1.18 8.12 -51.93 -0.42 0.76 16 25 H 0.07 1.21 8.12 -51.93 -0.42 0.79 16 26 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.02 0.33 7.56 -51.93 -0.39 -0.06 16 28 H 0.11 1.82 7.25 -52.48 -0.38 1.43 16 29 H 0.14 2.11 8.06 -52.49 -0.42 1.69 16 30 H 0.20 5.10 5.69 -52.48 -0.30 4.80 16 31 H 0.27 6.48 8.30 -40.82 -0.34 6.14 16 LS Contribution 263.89 15.07 3.98 3.98 Total: -1.00 -29.18 263.89 -7.87 -37.06 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -3.43 Total: 9.70 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -3.04 Total: -9.15 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: -0.36 Total: -56.16 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.58 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -29.18 -7.87 -37.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260549133.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.463 kcal (2) G-P(sol) polarization free energy of solvation -29.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds