Wall clock time and date at job start Mon Mar 30 2020 03:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46897 * 110.99975 * 2 1 4 4 C 1.38935 * 110.99558 * 123.94664 * 2 1 3 5 5 C 1.39427 * 121.04472 * 300.00099 * 4 2 1 6 6 C 1.38107 * 119.17490 * 179.97438 * 5 4 2 7 7 N 1.31806 * 121.62761 * 359.97438 * 6 5 4 8 8 C 1.32839 * 121.93424 * 0.02562 * 7 6 5 9 9 N 1.37882 * 132.49150 * 180.02562 * 8 7 6 10 10 H 0.96991 * 124.63453 * 0.02562 * 9 8 7 11 11 C 1.35777 * 110.72492 * 179.97438 * 9 8 7 12 12 C 1.38964 * 109.19230 * 359.97438 * 11 9 8 13 13 C 1.40900 * 126.99407 * 179.97438 * 12 11 9 14 14 H 1.08000 * 119.99813 * 180.02562 * 13 12 11 15 15 C 1.39722 * 120.00361 * 0.02798 * 13 12 11 16 16 N 1.31063 * 119.99488 * 359.97438 * 15 13 12 17 17 Si 1.86792 * 120.00335 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46991 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47222 * 119.99562 * 17 15 13 20 20 H 1.48496 * 109.47440 * 239.99987 * 17 15 13 21 21 C 1.39989 * 121.03459 * 119.71989 * 4 2 1 22 22 H 1.09001 * 109.47442 * 300.00764 * 1 2 3 23 23 H 1.09005 * 109.47297 * 60.00433 * 1 2 3 24 24 H 1.08993 * 109.47695 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46932 * 179.97438 * 3 2 1 26 26 H 1.09001 * 109.47214 * 299.99580 * 3 2 1 27 27 H 1.08993 * 109.47751 * 59.99817 * 3 2 1 28 28 H 1.08007 * 120.40852 * 359.95427 * 5 4 2 29 29 H 1.08000 * 119.18385 * 179.97438 * 6 5 4 30 30 H 1.08003 * 125.40562 * 179.97438 * 11 9 8 31 31 H 0.97002 * 119.99555 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9668 -0.7243 1.0760 5 6 1.6668 -0.3605 2.3881 6 6 2.1819 -1.1083 3.4287 7 7 2.9497 -2.1576 3.2119 8 6 3.2699 -2.5524 1.9846 9 7 4.0391 -3.5948 1.5126 10 1 4.4932 -4.2428 2.0734 11 6 4.0728 -3.5908 0.1552 12 6 3.3132 -2.5274 -0.3175 13 6 3.0940 -2.1746 -1.6638 14 1 2.4798 -1.3195 -1.9048 15 6 3.6709 -2.9309 -2.6872 16 7 4.4166 -3.9683 -2.3947 17 14 3.3808 -2.4627 -4.4721 18 1 2.5102 -1.2612 -4.5334 19 1 4.6817 -2.1656 -5.1237 20 1 2.7193 -3.5892 -5.1782 21 6 2.7805 -1.8458 0.8765 22 1 -0.3634 0.5139 0.8899 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3634 -1.0276 0.0005 25 1 3.0851 1.3423 0.0005 26 1 1.6460 1.8947 -0.8900 27 1 1.6460 1.8948 0.8899 28 1 1.0395 0.4957 2.5882 29 1 1.9500 -0.8264 4.4451 30 1 4.6055 -4.3012 -0.4596 31 1 4.8168 -4.4936 -3.1052 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260549133.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:27 Heat of formation + Delta-G solvation = 58.324894 kcal Electronic energy + Delta-G solvation = -15993.783190 eV Core-core repulsion = 13468.055665 eV Total energy + Delta-G solvation = -2525.727525 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.83632 -39.13767 -37.44644 -35.27322 -32.37994 -30.68017 -29.67072 -28.41859 -26.78688 -25.63432 -23.11606 -22.46473 -21.28066 -18.97429 -17.77273 -17.38947 -17.05799 -16.03293 -16.01657 -15.68257 -15.17321 -15.12002 -14.52466 -14.34213 -13.58766 -13.20424 -13.01032 -12.98524 -12.76749 -12.68914 -12.62114 -12.58096 -11.86993 -11.58960 -11.27890 -10.49420 -10.15383 -9.21047 -9.04619 -8.57915 -8.35475 -5.92569 0.37726 0.74193 1.41228 1.46015 1.60677 2.32291 2.33793 2.49965 3.04769 3.12400 3.67141 4.03917 4.24338 4.33332 4.45448 4.51871 4.55813 4.68524 4.73124 4.87228 5.00097 5.00683 5.18581 5.38957 5.48433 5.56016 5.85042 6.12220 6.14520 6.41954 6.60428 6.73571 7.09013 7.22914 7.24892 7.54651 8.63308 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.024324 B = 0.011069 C = 0.007989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.830796 B = 2529.060768 C = 3504.184471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.525 5.525 3 C 0.039 3.961 4 C 0.181 3.819 5 C -0.268 4.268 6 C 0.130 3.870 7 N -0.539 5.539 8 C 0.250 3.750 9 N -0.567 5.567 10 H 0.410 0.590 11 C -0.118 4.118 12 C 0.004 3.996 13 C -0.423 4.423 14 H 0.085 0.915 15 C 0.007 3.993 16 N -0.858 5.858 17 Si 0.985 3.015 18 H -0.260 1.260 19 H -0.274 1.274 20 H -0.274 1.274 21 C -0.189 4.189 22 H 0.047 0.953 23 H 0.088 0.912 24 H 0.048 0.952 25 H 0.047 0.953 26 H 0.088 0.912 27 H 0.047 0.953 28 H 0.151 0.849 29 H 0.187 0.813 30 H 0.187 0.813 31 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.349 7.334 3.724 9.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.247 5.247 3 C -0.107 4.107 4 C 0.079 3.921 5 C -0.293 4.293 6 C -0.037 4.037 7 N -0.255 5.255 8 C 0.015 3.985 9 N -0.173 5.173 10 H 0.246 0.754 11 C -0.242 4.242 12 C -0.002 4.002 13 C -0.456 4.456 14 H 0.103 0.897 15 C -0.200 4.200 16 N -0.490 5.490 17 Si 0.808 3.192 18 H -0.184 1.184 19 H -0.199 1.199 20 H -0.199 1.199 21 C -0.199 4.199 22 H 0.066 0.934 23 H 0.106 0.894 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.107 0.893 27 H 0.065 0.935 28 H 0.169 0.831 29 H 0.204 0.796 30 H 0.203 0.797 31 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.625 6.311 3.744 8.674 hybrid contribution -0.137 0.238 -0.504 0.574 sum -4.762 6.549 3.240 8.721 Atomic orbital electron populations 1.22387 0.84648 1.01702 1.02120 1.59108 1.09329 1.14655 1.41566 1.22368 0.99814 0.86453 1.02084 1.18591 0.92442 0.91308 0.89758 1.22278 1.08977 1.05491 0.92551 1.22607 0.91870 0.88979 1.00214 1.66534 1.18827 1.18639 1.21487 1.18673 0.97617 0.92553 0.89648 1.41251 1.43979 1.25102 1.06968 0.75400 1.23297 1.13908 1.07480 0.79532 1.18393 0.96501 0.93452 0.91864 1.19224 1.25715 1.11163 0.89482 0.89690 1.26573 0.94069 0.94300 1.05073 1.69529 1.28185 1.16174 1.35116 0.85072 0.78490 0.78893 0.76725 1.18395 1.19917 1.19935 1.20225 1.04956 0.99288 0.95410 0.93416 0.89372 0.93328 0.93443 0.89345 0.93479 0.83104 0.79642 0.79676 0.91193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.13 9.29 127.69 1.19 2.32 16 2 N -0.53 -19.75 3.96 -744.23 -2.95 -22.69 16 3 C 0.04 1.18 9.34 127.69 1.19 2.37 16 4 C 0.18 7.64 4.72 38.73 0.18 7.82 16 5 C -0.27 -9.21 8.78 22.53 0.20 -9.01 16 6 C 0.13 4.50 11.13 84.67 0.94 5.44 16 7 N -0.54 -22.97 10.39 -193.01 -2.00 -24.98 16 8 C 0.25 12.10 8.39 133.58 1.12 13.22 16 9 N -0.57 -26.81 5.98 -189.62 -1.13 -27.95 16 10 H 0.41 16.40 8.96 -92.71 -0.83 15.57 16 11 C -0.12 -6.31 10.90 84.26 0.92 -5.39 16 12 C 0.00 0.21 6.10 -20.03 -0.12 0.09 16 13 C -0.42 -23.50 9.28 23.28 0.22 -23.28 16 14 H 0.08 4.64 6.93 -2.91 -0.02 4.62 16 15 C 0.01 0.35 5.49 85.17 0.47 0.82 16 16 N -0.86 -45.75 10.34 21.80 0.23 -45.52 16 17 Si 0.98 40.69 29.56 68.60 2.03 42.72 16 18 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 19 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 20 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 21 C -0.19 -9.57 6.30 -19.94 -0.13 -9.69 16 22 H 0.05 1.18 7.35 -2.39 -0.02 1.16 16 23 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16 24 H 0.05 1.62 8.12 -2.39 -0.02 1.60 16 25 H 0.05 1.61 8.12 -2.38 -0.02 1.59 16 26 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.05 1.18 7.56 -2.39 -0.02 1.16 16 28 H 0.15 4.01 7.25 -2.91 -0.02 3.99 16 29 H 0.19 4.62 8.06 -2.91 -0.02 4.60 16 30 H 0.19 10.20 5.69 -2.91 -0.02 10.19 16 31 H 0.28 13.55 8.30 -92.71 -0.77 12.78 16 Total: -1.00 -64.97 263.89 2.67 -62.30 By element: Atomic # 1 Polarization: 31.10 SS G_CDS: 0.33 Total: 31.42 kcal Atomic # 6 Polarization: -21.47 SS G_CDS: 6.18 Total: -15.30 kcal Atomic # 7 Polarization: -115.28 SS G_CDS: -5.86 Total: -121.14 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.72 kcal Total: -64.97 2.67 -62.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260549133.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.620 kcal (2) G-P(sol) polarization free energy of solvation -64.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds