Wall clock time and date at job start Mon Mar 30 2020 03:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47545 * 2 1 4 4 C 1.50700 * 109.46892 * 120.00408 * 2 1 3 5 5 H 1.08008 * 120.00021 * 119.99806 * 4 2 1 6 6 C 1.37877 * 120.00145 * 299.99607 * 4 2 1 7 7 N 1.31521 * 119.99634 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00161 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47312 * 60.00020 * 8 6 4 10 10 H 1.48504 * 109.47343 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47235 * 299.99970 * 8 6 4 12 12 C 1.50704 * 109.47055 * 240.00153 * 2 1 3 13 13 N 1.30205 * 124.94452 * 299.96255 * 12 2 1 14 14 C 1.35678 * 109.74418 * 180.02562 * 13 12 2 15 15 N 1.33120 * 133.32185 * 179.97438 * 14 13 12 16 16 C 1.31510 * 121.52595 * 179.75149 * 15 14 13 17 17 C 1.38623 * 121.41863 * 0.54931 * 16 15 14 18 18 C 1.38414 * 119.46094 * 359.46229 * 17 16 15 19 19 C 1.38893 * 118.20337 * 0.25615 * 18 17 16 20 20 N 1.35888 * 124.94259 * 120.00552 * 12 2 1 21 21 C 1.46499 * 126.38858 * 359.95989 * 20 12 2 22 22 H 1.09009 * 109.46876 * 59.99656 * 1 2 3 23 23 H 1.08993 * 109.47281 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46994 * 299.99861 * 1 2 3 25 25 H 0.96998 * 119.99795 * 179.97438 * 7 6 4 26 26 H 1.08001 * 119.29175 * 180.26325 * 16 15 14 27 27 H 1.08002 * 120.27168 * 179.74593 * 17 16 15 28 28 H 1.08004 * 120.89892 * 180.23435 * 18 17 16 29 29 H 1.09004 * 109.46894 * 269.97929 * 21 20 12 30 30 H 1.08998 * 109.47171 * 29.97974 * 21 20 12 31 31 H 1.09004 * 109.46895 * 149.98150 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5887 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3212 -1.1206 4.0078 9 1 3.8062 -1.1213 4.0081 10 1 1.8259 -0.4209 5.2204 11 1 1.8255 -2.5205 4.0076 12 6 2.0323 -0.7104 -1.2305 13 7 1.7784 -1.9516 -1.5310 14 6 2.3827 -2.2724 -2.7026 15 7 2.4344 -3.3872 -3.4284 16 6 3.1025 -3.4407 -4.5599 17 6 3.7937 -2.3408 -5.0437 18 6 3.7735 -1.1557 -4.3288 19 6 3.0574 -1.1187 -3.1393 20 7 2.8169 -0.1490 -2.1875 21 6 3.3143 1.2288 -2.2056 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 0.7082 1.1607 3.4844 26 1 3.1167 -4.3628 -5.1220 27 1 4.3397 -2.4065 -5.9732 28 1 4.3006 -0.2834 -4.6862 29 1 2.5988 1.8666 -2.7246 30 1 3.4412 1.5827 -1.1825 31 1 4.2731 1.2622 -2.7232 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260641405.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:22 Heat of formation + Delta-G solvation = 82.239381 kcal Electronic energy + Delta-G solvation = -15707.127265 eV Core-core repulsion = 13182.436750 eV Total energy + Delta-G solvation = -2524.690515 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.80411 -38.05195 -34.36326 -33.79453 -31.51391 -30.99454 -28.51198 -26.68499 -25.27368 -23.66032 -22.40750 -21.26196 -19.12726 -17.52355 -16.75061 -16.28378 -15.70490 -15.42343 -14.72259 -14.04081 -13.42813 -13.39133 -13.07968 -12.72111 -12.38517 -12.24176 -11.93299 -11.46022 -10.96122 -10.84733 -10.60383 -10.38733 -10.24419 -10.02778 -9.94474 -9.18193 -8.63252 -8.49718 -8.22061 -7.86208 -6.14383 -4.20400 1.23897 1.67310 3.01581 3.28852 3.30137 3.33668 3.41471 4.27983 4.35321 4.42164 4.80946 4.98650 5.12054 5.18480 5.22281 5.39670 5.53270 5.65882 5.67676 5.79056 6.24726 6.44446 6.54956 6.70248 6.85301 6.92663 7.05673 7.43559 7.58687 7.74337 7.92950 8.12886 8.26584 8.73262 8.81050 9.44439 10.91977 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.036714 B = 0.007298 C = 0.006823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.473616 B = 3835.686259 C = 4102.604113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.112 3.888 3 H 0.049 0.951 4 C -0.505 4.505 5 H 0.063 0.937 6 C 0.065 3.935 7 N -0.891 5.891 8 Si 0.902 3.098 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.273 1.273 12 C 0.364 3.636 13 N -0.490 5.490 14 C 0.256 3.744 15 N -0.453 5.453 16 C 0.106 3.894 17 C -0.185 4.185 18 C -0.061 4.061 19 C -0.022 4.022 20 N -0.498 5.498 21 C 0.080 3.920 22 H 0.008 0.992 23 H 0.045 0.955 24 H 0.095 0.905 25 H 0.265 0.735 26 H 0.157 0.843 27 H 0.135 0.865 28 H 0.125 0.875 29 H 0.070 0.930 30 H 0.098 0.902 31 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.527 1.435 -11.847 13.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.091 3.909 3 H 0.066 0.934 4 C -0.544 4.544 5 H 0.081 0.919 6 C -0.136 4.136 7 N -0.529 5.529 8 Si 0.729 3.271 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.098 3.902 13 N -0.210 5.210 14 C 0.012 3.988 15 N -0.163 5.163 16 C -0.064 4.064 17 C -0.207 4.207 18 C -0.090 4.090 19 C -0.134 4.134 20 N -0.188 5.188 21 C -0.062 4.062 22 H 0.027 0.973 23 H 0.064 0.936 24 H 0.113 0.887 25 H 0.074 0.926 26 H 0.174 0.826 27 H 0.153 0.847 28 H 0.143 0.857 29 H 0.089 0.911 30 H 0.117 0.883 31 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.533 0.409 -10.873 11.787 hybrid contribution 1.369 0.909 -0.085 1.646 sum 5.902 1.318 -10.959 12.516 Atomic orbital electron populations 1.21755 0.95509 1.00995 1.00551 1.17758 0.94120 0.94399 0.84574 0.93364 1.20872 1.31965 1.12669 0.88874 0.91891 1.24892 0.94805 0.94945 0.99005 1.69851 1.36276 1.22769 1.24042 0.86482 0.79096 0.80028 0.81470 1.20255 1.21129 1.19868 1.25366 0.86189 0.88041 0.90624 1.70490 1.26360 1.12083 1.12017 1.19887 0.96669 0.88379 0.93816 1.66764 1.18329 1.25570 1.05641 1.22501 0.93854 0.98284 0.91732 1.21705 1.03725 0.93614 1.01627 1.20289 0.98102 0.98773 0.91853 1.19794 1.05554 0.93034 0.95053 1.45401 1.43377 1.10965 1.19034 1.21949 0.99516 0.79573 1.05158 0.97254 0.93613 0.88677 0.92555 0.82607 0.84705 0.85687 0.91097 0.88345 0.90558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 8.95 37.16 0.33 -2.77 16 2 C 0.11 2.73 2.62 -92.92 -0.24 2.48 16 3 H 0.05 1.15 6.66 -51.93 -0.35 0.81 16 4 C -0.50 -13.70 8.54 -34.44 -0.29 -14.00 16 5 H 0.06 1.79 7.74 -52.48 -0.41 1.38 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -24.03 11.32 55.43 0.63 -23.40 16 8 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 12 C 0.36 8.42 6.31 -154.88 -0.98 7.44 16 13 N -0.49 -12.25 11.25 -9.78 -0.11 -12.36 16 14 C 0.26 5.74 8.37 -156.99 -1.31 4.42 16 15 N -0.45 -9.23 10.41 -12.66 -0.13 -9.36 16 16 C 0.11 1.59 11.15 -17.55 -0.20 1.40 16 17 C -0.18 -2.38 10.10 -39.37 -0.40 -2.78 16 18 C -0.06 -0.89 10.18 -39.27 -0.40 -1.29 16 19 C -0.02 -0.42 6.88 -83.96 -0.58 -1.00 16 20 N -0.50 -9.59 3.20 -118.49 -0.38 -9.97 16 21 C 0.08 1.12 10.82 59.85 0.65 1.77 16 22 H 0.01 0.18 8.14 -51.92 -0.42 -0.24 16 23 H 0.04 1.13 8.14 -51.93 -0.42 0.71 16 24 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 25 H 0.26 6.82 8.31 -40.82 -0.34 6.49 16 26 H 0.16 1.71 8.06 -52.49 -0.42 1.29 16 27 H 0.14 1.19 8.06 -52.49 -0.42 0.76 16 28 H 0.13 1.40 8.06 -52.48 -0.42 0.97 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.10 1.41 7.00 -51.93 -0.36 1.04 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 268.78 15.07 4.05 4.05 Total: -1.00 -31.70 268.78 -8.00 -39.71 By element: Atomic # 1 Polarization: 1.42 SS G_CDS: -3.52 Total: -2.10 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: -3.51 Total: -2.67 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: 0.01 Total: -55.09 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -31.70 -8.00 -39.71 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260641405.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.946 kcal (2) G-P(sol) polarization free energy of solvation -31.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds