Wall clock time and date at job start Mon Mar 30 2020 03:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47545 * 2 1 4 4 C 1.50700 * 109.46892 * 120.00408 * 2 1 3 5 5 H 1.08008 * 120.00021 * 119.99806 * 4 2 1 6 6 C 1.37877 * 120.00145 * 299.99607 * 4 2 1 7 7 N 1.31521 * 119.99634 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00161 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47312 * 60.00020 * 8 6 4 10 10 H 1.48504 * 109.47343 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47235 * 299.99970 * 8 6 4 12 12 C 1.50704 * 109.47055 * 240.00153 * 2 1 3 13 13 N 1.30205 * 124.94452 * 299.96255 * 12 2 1 14 14 C 1.35678 * 109.74418 * 180.02562 * 13 12 2 15 15 N 1.33120 * 133.32185 * 179.97438 * 14 13 12 16 16 C 1.31510 * 121.52595 * 179.75149 * 15 14 13 17 17 C 1.38623 * 121.41863 * 0.54931 * 16 15 14 18 18 C 1.38414 * 119.46094 * 359.46229 * 17 16 15 19 19 C 1.38893 * 118.20337 * 0.25615 * 18 17 16 20 20 N 1.35888 * 124.94259 * 120.00552 * 12 2 1 21 21 C 1.46499 * 126.38858 * 359.95989 * 20 12 2 22 22 H 1.09009 * 109.46876 * 59.99656 * 1 2 3 23 23 H 1.08993 * 109.47281 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46994 * 299.99861 * 1 2 3 25 25 H 0.96998 * 119.99795 * 179.97438 * 7 6 4 26 26 H 1.08001 * 119.29175 * 180.26325 * 16 15 14 27 27 H 1.08002 * 120.27168 * 179.74593 * 17 16 15 28 28 H 1.08004 * 120.89892 * 180.23435 * 18 17 16 29 29 H 1.09004 * 109.46894 * 269.97929 * 21 20 12 30 30 H 1.08998 * 109.47171 * 29.97974 * 21 20 12 31 31 H 1.09004 * 109.46895 * 149.98150 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5887 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3212 -1.1206 4.0078 9 1 3.8062 -1.1213 4.0081 10 1 1.8259 -0.4209 5.2204 11 1 1.8255 -2.5205 4.0076 12 6 2.0323 -0.7104 -1.2305 13 7 1.7784 -1.9516 -1.5310 14 6 2.3827 -2.2724 -2.7026 15 7 2.4344 -3.3872 -3.4284 16 6 3.1025 -3.4407 -4.5599 17 6 3.7937 -2.3408 -5.0437 18 6 3.7735 -1.1557 -4.3288 19 6 3.0574 -1.1187 -3.1393 20 7 2.8169 -0.1490 -2.1875 21 6 3.3143 1.2288 -2.2056 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 0.7082 1.1607 3.4844 26 1 3.1167 -4.3628 -5.1220 27 1 4.3397 -2.4065 -5.9732 28 1 4.3006 -0.2834 -4.6862 29 1 2.5988 1.8666 -2.7246 30 1 3.4412 1.5827 -1.1825 31 1 4.2731 1.2622 -2.7232 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260641405.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:22 Heat of formation + Delta-G solvation = 62.218521 kcal Electronic energy + Delta-G solvation = -15707.995435 eV Core-core repulsion = 13182.436750 eV Total energy + Delta-G solvation = -2525.558684 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.22806 -39.37852 -36.24160 -35.22173 -32.98626 -32.67360 -29.94592 -27.91031 -27.31994 -25.25304 -23.71746 -22.78293 -20.72918 -18.97785 -18.30526 -17.94181 -17.03081 -16.87995 -16.53310 -15.40533 -14.87908 -14.67213 -14.63343 -14.32734 -13.69493 -13.54144 -13.37424 -13.17159 -12.88466 -12.59607 -12.43948 -12.24804 -11.90882 -11.70431 -11.48277 -11.15034 -10.54753 -10.00755 -9.59412 -9.27665 -8.18861 -6.31153 -0.04242 0.43482 1.39930 1.43099 1.50043 1.69529 1.83155 2.42007 2.93430 3.03129 3.10865 3.54655 3.87097 4.03873 4.06261 4.16934 4.37598 4.50757 4.56606 4.64090 4.78493 4.94215 5.00372 5.09134 5.25170 5.31687 5.44635 5.66716 5.83402 5.85312 6.10860 6.26261 6.69646 6.84965 7.30120 7.35738 8.86245 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.036714 B = 0.007298 C = 0.006823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.473616 B = 3835.686259 C = 4102.604113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.116 3.884 3 H 0.050 0.950 4 C -0.525 4.525 5 H 0.038 0.962 6 C 0.029 3.971 7 N -0.906 5.906 8 Si 0.955 3.045 9 H -0.272 1.272 10 H -0.272 1.272 11 H -0.282 1.282 12 C 0.334 3.666 13 N -0.540 5.540 14 C 0.199 3.801 15 N -0.499 5.499 16 C 0.106 3.894 17 C -0.157 4.157 18 C -0.056 4.056 19 C -0.031 4.031 20 N -0.492 5.492 21 C 0.072 3.928 22 H 0.028 0.972 23 H 0.023 0.977 24 H 0.079 0.921 25 H 0.269 0.731 26 H 0.197 0.803 27 H 0.193 0.807 28 H 0.170 0.830 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.533 1.949 -14.423 16.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.096 3.904 3 H 0.068 0.932 4 C -0.564 4.564 5 H 0.056 0.944 6 C -0.171 4.171 7 N -0.544 5.544 8 Si 0.780 3.220 9 H -0.197 1.197 10 H -0.196 1.196 11 H -0.208 1.208 12 C 0.067 3.933 13 N -0.261 5.261 14 C -0.042 4.042 15 N -0.210 5.210 16 C -0.064 4.064 17 C -0.178 4.178 18 C -0.085 4.085 19 C -0.144 4.144 20 N -0.181 5.181 21 C -0.069 4.069 22 H 0.047 0.953 23 H 0.042 0.958 24 H 0.097 0.903 25 H 0.078 0.922 26 H 0.213 0.787 27 H 0.210 0.790 28 H 0.187 0.813 29 H 0.110 0.890 30 H 0.106 0.894 31 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.547 0.966 -13.447 14.988 hybrid contribution 0.823 0.642 0.480 1.149 sum 7.370 1.608 -12.967 15.002 Atomic orbital electron populations 1.21566 0.95856 0.99499 1.00591 1.17504 0.93883 0.94225 0.84773 0.93247 1.20979 1.32302 1.12318 0.90764 0.94405 1.25505 0.94922 0.95585 1.01124 1.69916 1.36473 1.23299 1.24746 0.85669 0.78802 0.78576 0.78955 1.19726 1.19630 1.20753 1.24716 0.88799 0.88229 0.91594 1.70224 1.28037 1.13521 1.14339 1.20063 0.99246 0.90650 0.94268 1.66727 1.20670 1.25906 1.07737 1.23399 0.92067 1.00787 0.90099 1.22367 1.01302 0.91674 1.02449 1.20920 0.96780 1.01064 0.89750 1.20143 1.06159 0.91695 0.96399 1.45503 1.42088 1.12475 1.17985 1.22307 1.01817 0.77291 1.05457 0.95296 0.95754 0.90253 0.92202 0.78674 0.79007 0.81259 0.88961 0.89408 0.86889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.84 8.95 71.98 0.64 -5.20 16 2 C 0.12 5.92 2.62 -12.28 -0.03 5.89 16 3 H 0.05 2.44 6.66 -2.39 -0.02 2.43 16 4 C -0.52 -29.78 8.54 25.60 0.22 -29.56 16 5 H 0.04 2.28 7.74 -2.91 -0.02 2.26 16 6 C 0.03 1.59 5.30 84.65 0.45 2.03 16 7 N -0.91 -49.68 11.32 21.45 0.24 -49.44 16 8 Si 0.95 44.11 29.54 68.60 2.03 46.13 16 9 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 10 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 11 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 12 C 0.33 16.07 6.31 137.94 0.87 16.94 16 13 N -0.54 -28.46 11.25 -184.86 -2.08 -30.54 16 14 C 0.20 9.08 8.37 134.31 1.12 10.21 16 15 N -0.50 -20.26 10.41 -193.97 -2.02 -22.28 16 16 C 0.11 2.85 11.15 84.83 0.95 3.79 16 17 C -0.16 -3.17 10.10 22.40 0.23 -2.94 16 18 C -0.06 -1.39 10.18 22.47 0.23 -1.16 16 19 C -0.03 -1.16 6.88 38.91 0.27 -0.89 16 20 N -0.49 -18.78 3.20 -528.79 -1.69 -20.47 16 21 C 0.07 1.86 10.82 127.77 1.38 3.25 16 22 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 23 H 0.02 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.08 4.18 6.07 -2.39 -0.01 4.17 16 25 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 26 H 0.20 3.42 8.06 -2.91 -0.02 3.40 16 27 H 0.19 1.77 8.06 -2.91 -0.02 1.75 16 28 H 0.17 2.64 8.06 -2.91 -0.02 2.62 16 29 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.09 2.47 7.00 -2.39 -0.02 2.45 16 31 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -74.73 268.78 3.93 -70.79 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: 1.13 Total: 3.44 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: 6.32 Total: 2.36 kcal Atomic # 7 Polarization: -117.18 SS G_CDS: -5.55 Total: -122.73 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Total: -74.73 3.93 -70.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260641405.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.010 kcal (2) G-P(sol) polarization free energy of solvation -74.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds