Wall clock time and date at job start Mon Mar 30 2020 03:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30757 * 1 3 3 Si 1.86796 * 119.99956 * 2 1 4 4 H 1.48501 * 109.47342 * 274.98247 * 3 2 1 5 5 H 1.48500 * 109.47327 * 34.98212 * 3 2 1 6 6 H 1.48505 * 109.47251 * 154.98535 * 3 2 1 7 7 C 1.39938 * 120.00216 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00190 * 185.95486 * 7 2 1 9 9 C 1.41789 * 119.99680 * 5.67298 * 7 2 1 10 10 N 1.31920 * 126.44050 * 354.23587 * 9 7 2 11 11 O 1.21270 * 110.12807 * 179.86590 * 10 9 7 12 12 C 1.34340 * 110.10706 * 0.40600 * 11 10 9 13 13 C 1.47648 * 126.43852 * 179.71614 * 12 11 10 14 14 C 1.39625 * 120.18371 * 180.02562 * 13 12 11 15 15 C 1.37855 * 119.91273 * 179.97438 * 14 13 12 16 16 C 1.38496 * 120.27741 * 359.97438 * 15 14 13 17 17 C 1.38112 * 120.37694 * 359.97438 * 16 15 14 18 18 C 1.38641 * 120.08348 * 359.78650 * 17 16 15 19 19 O 1.35723 * 120.14477 * 180.23664 * 18 17 16 20 20 N 1.31824 * 107.12453 * 359.74528 * 12 11 10 21 21 H 0.97001 * 120.00190 * 359.97438 * 1 2 3 22 22 H 1.08000 * 120.04344 * 359.97438 * 14 13 12 23 23 H 1.07998 * 119.85853 * 179.97438 * 15 14 13 24 24 H 1.08005 * 119.80752 * 179.97438 * 16 15 14 25 25 H 1.07999 * 119.95916 * 180.02562 * 17 16 15 26 26 H 0.96701 * 114.00274 * 270.23058 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.3838 2.1072 -1.3948 5 1 1.4956 2.6200 0.8027 6 1 3.5879 1.4121 0.5920 7 6 2.0073 -1.2119 -0.0005 8 1 3.0829 -1.2144 0.0965 9 6 1.3036 -2.4367 -0.1225 10 7 -0.0067 -2.5897 -0.1357 11 8 -0.2887 -3.7630 -0.2559 12 6 0.8309 -4.5023 -0.3250 13 6 0.9052 -5.9700 -0.4672 14 6 2.1459 -6.6078 -0.5256 15 6 2.2087 -7.9785 -0.6579 16 6 1.0458 -8.7269 -0.7326 17 6 -0.1877 -8.1083 -0.6749 18 6 -0.2688 -6.7312 -0.5370 19 8 -1.4803 -6.1225 -0.4754 20 7 1.8507 -3.6712 -0.2414 21 1 -0.4850 0.8400 0.0004 22 1 3.0552 -6.0279 -0.4673 23 1 3.1689 -8.4708 -0.7034 24 1 1.1039 -9.8003 -0.8366 25 1 -1.0903 -8.6985 -0.7334 26 1 -1.8335 -5.8612 -1.3368 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260840092.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:33 Heat of formation + Delta-G solvation = 14.340627 kcal Electronic energy + Delta-G solvation = -15260.033817 eV Core-core repulsion = 12498.847234 eV Total energy + Delta-G solvation = -2761.186582 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 232.063 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -45.28355 -40.61609 -37.63834 -36.49989 -35.20753 -33.37507 -31.17298 -30.36225 -28.64961 -25.01446 -24.14475 -23.02036 -22.38608 -19.89051 -18.95818 -18.20330 -17.90836 -17.25434 -16.49631 -16.37324 -16.18592 -15.19689 -14.88999 -14.63875 -13.50371 -13.34497 -13.27183 -13.15387 -12.96731 -12.63345 -12.30802 -12.28585 -11.97205 -11.53222 -11.49717 -11.18473 -10.63602 -9.77146 -9.38269 -8.68150 -6.84553 -0.26071 0.32086 1.19589 1.35322 1.40048 1.54132 2.01769 2.17875 2.46535 2.73236 3.16524 3.25857 3.38806 4.02668 4.18720 4.42712 4.46344 4.51402 4.62846 4.95534 5.05566 5.17262 5.38842 5.40856 5.50409 5.67357 5.87833 6.12283 6.38385 6.70778 6.78375 8.26200 8.38074 Molecular weight = 232.06amu Principal moments of inertia in cm(-1) A = 0.057533 B = 0.006315 C = 0.005708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.558250 B = 4432.902645 C = 4904.169518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.021 3.979 3 Si 1.013 2.987 4 H -0.259 1.259 5 H -0.264 1.264 6 H -0.252 1.252 7 C -0.472 4.472 8 H 0.095 0.905 9 C 0.260 3.740 10 N -0.462 5.462 11 O 0.033 5.967 12 C 0.171 3.829 13 C -0.073 4.073 14 C -0.073 4.073 15 C -0.124 4.124 16 C -0.071 4.071 17 C -0.143 4.143 18 C 0.125 3.875 19 O -0.504 6.504 20 N -0.538 5.538 21 H 0.287 0.713 22 H 0.124 0.876 23 H 0.167 0.833 24 H 0.177 0.823 25 H 0.164 0.836 26 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.564 -14.900 -3.391 15.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.196 4.196 3 Si 0.831 3.169 4 H -0.183 1.183 5 H -0.188 1.188 6 H -0.175 1.175 7 C -0.512 4.512 8 H 0.113 0.887 9 C 0.009 3.991 10 N -0.190 5.190 11 O -0.009 6.009 12 C -0.047 4.047 13 C -0.076 4.076 14 C -0.093 4.093 15 C -0.141 4.141 16 C -0.089 4.089 17 C -0.161 4.161 18 C 0.078 3.922 19 O -0.317 6.317 20 N -0.278 5.278 21 H 0.098 0.902 22 H 0.142 0.858 23 H 0.184 0.816 24 H 0.194 0.806 25 H 0.181 0.819 26 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 1.216 -14.186 -2.714 14.494 hybrid contribution -0.031 1.181 -0.379 1.241 sum 1.185 -13.004 -3.093 13.419 Atomic orbital electron populations 1.69993 1.09235 1.30497 1.34425 1.27056 0.95911 1.05101 0.91509 0.84749 0.78642 0.73912 0.79571 1.18311 1.18792 1.17491 1.18886 0.95117 0.87359 1.49883 0.88652 1.22769 0.86558 0.93043 0.96778 1.75514 1.16657 0.92616 1.34201 1.85283 1.34217 1.13487 1.67921 1.26694 0.82707 0.96256 0.99018 1.18177 0.96542 0.83273 1.09594 1.21276 0.95123 0.96256 0.96636 1.21478 1.01170 0.91427 1.00054 1.21713 0.90425 1.02156 0.94650 1.21661 1.00947 0.91547 1.01948 1.18847 0.83291 0.91717 0.98344 1.84741 1.31327 1.79378 1.36213 1.72176 1.29729 1.00600 1.25320 0.90246 0.85816 0.81598 0.80561 0.81855 0.73375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -48.14 12.00 21.82 0.26 -47.88 15 2 C 0.02 1.20 5.49 85.26 0.47 1.66 15 3 Si 1.01 41.13 29.56 68.60 2.03 43.16 15 4 H -0.26 -9.97 7.11 99.48 0.71 -9.26 15 5 H -0.26 -10.05 7.11 99.48 0.71 -9.34 15 6 H -0.25 -9.72 7.11 99.48 0.71 -9.02 15 7 C -0.47 -28.68 9.51 23.56 0.22 -28.45 15 8 H 0.10 5.48 7.85 -2.91 -0.02 5.46 15 9 C 0.26 16.47 7.66 135.01 1.03 17.51 15 10 N -0.46 -29.40 10.48 -59.68 -0.63 -30.02 15 11 O 0.03 1.87 9.96 86.19 0.86 2.72 15 12 C 0.17 8.73 7.94 87.23 0.69 9.42 15 13 C -0.07 -2.78 5.88 -20.01 -0.12 -2.90 15 14 C -0.07 -2.26 9.70 22.51 0.22 -2.05 15 15 C -0.12 -2.48 10.03 22.24 0.22 -2.26 15 16 C -0.07 -1.15 10.03 22.30 0.22 -0.92 15 17 C -0.14 -2.95 9.98 22.34 0.22 -2.73 15 18 C 0.12 3.86 6.72 22.81 0.15 4.02 15 19 O -0.50 -16.22 11.93 -72.59 -0.87 -17.09 15 20 N -0.54 -30.71 11.28 -305.31 -3.44 -34.15 15 21 H 0.29 15.21 8.29 -92.71 -0.77 14.44 15 22 H 0.12 4.14 7.87 -2.91 -0.02 4.12 15 23 H 0.17 2.11 8.06 -2.91 -0.02 2.09 15 24 H 0.18 1.26 8.06 -2.91 -0.02 1.23 15 25 H 0.16 2.36 8.06 -2.91 -0.02 2.34 15 26 H 0.41 9.88 9.06 -74.06 -0.67 9.21 15 Total: -1.00 -80.80 246.71 2.12 -78.68 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: 0.56 Total: 11.28 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: 3.34 Total: -6.70 kcal Atomic # 7 Polarization: -108.24 SS G_CDS: -3.81 Total: -112.05 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -0.01 Total: -14.37 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.16 kcal Total: -80.80 2.12 -78.68 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260840092.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.016 kcal (2) G-P(sol) polarization free energy of solvation -80.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds