Wall clock time and date at job start Mon Mar 30 2020 03:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30764 * 1 3 3 Si 1.86797 * 119.99805 * 2 1 4 4 H 1.48497 * 109.47001 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47121 * 299.99951 * 3 2 1 6 6 H 1.48496 * 109.47350 * 59.99933 * 3 2 1 7 7 C 1.39941 * 120.00063 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99888 * 180.02562 * 7 2 1 9 9 C 1.41787 * 119.99900 * 359.97438 * 7 2 1 10 10 N 1.31916 * 126.44764 * 359.97438 * 9 7 2 11 11 O 1.21277 * 110.11072 * 179.97438 * 10 9 7 12 12 C 1.34314 * 110.10088 * 359.97438 * 11 10 9 13 13 C 1.47868 * 126.42111 * 180.02562 * 12 11 10 14 14 C 1.39600 * 120.11754 * 180.27628 * 13 12 11 15 15 C 1.37966 * 119.96793 * 180.27903 * 14 13 12 16 16 C 1.38288 * 120.20458 * 359.72272 * 15 14 13 17 17 C 1.38807 * 120.23197 * 359.97438 * 16 15 14 18 18 O 1.35914 * 119.98305 * 180.02562 * 17 16 15 19 19 C 1.38499 * 120.03472 * 0.02562 * 17 16 15 20 20 N 1.31719 * 107.15094 * 0.26297 * 12 11 10 21 21 H 0.96996 * 120.00103 * 0.02562 * 1 2 3 22 22 H 1.07999 * 120.01003 * 359.97248 * 14 13 12 23 23 H 1.07995 * 119.89523 * 179.70094 * 15 14 13 24 24 H 1.07995 * 119.87728 * 179.97438 * 16 15 14 25 25 H 0.96698 * 113.99972 * 270.02524 * 18 17 16 26 26 H 1.08002 * 120.10067 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 3.7015 1.3464 0.0006 5 1 1.8828 2.3964 -1.2125 6 1 1.8828 2.3965 1.2124 7 6 2.0074 -1.2119 0.0005 8 1 3.0873 -1.2119 0.0010 9 6 1.2984 -2.4398 0.0016 10 7 -0.0124 -2.5880 0.0027 11 8 -0.2989 -3.7664 0.0030 12 6 0.8177 -4.5129 0.0015 13 6 0.8862 -5.9900 0.0007 14 6 2.1249 -6.6337 0.0050 15 6 2.1853 -8.0120 -0.0016 16 6 1.0218 -8.7594 -0.0066 17 6 -0.2144 -8.1280 -0.0045 18 8 -1.3548 -8.8675 -0.0089 19 6 -0.2864 -6.7449 0.0020 20 7 1.8401 -3.6824 0.0061 21 1 -0.4850 0.8400 -0.0004 22 1 3.0355 -6.0530 0.0084 23 1 3.1442 -8.5088 -0.0032 24 1 1.0752 -9.8380 -0.0121 25 1 -1.6839 -9.0776 -0.8936 26 1 -1.2476 -6.2526 0.0032 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260955011.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:04 Heat of formation + Delta-G solvation = 12.841872 kcal Electronic energy + Delta-G solvation = -14973.579721 eV Core-core repulsion = 12212.328147 eV Total energy + Delta-G solvation = -2761.251573 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 232.063 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -45.34103 -40.61405 -37.74990 -36.54972 -35.14234 -33.40897 -31.20924 -30.40156 -28.67778 -25.09931 -24.25960 -23.01864 -22.42572 -19.97008 -18.75606 -18.25167 -17.89112 -17.29922 -16.61072 -16.47521 -16.19032 -15.37985 -14.84356 -14.62315 -13.60518 -13.37666 -13.27495 -13.15954 -12.98341 -12.71498 -12.33393 -12.31002 -11.95628 -11.58195 -11.48869 -11.22760 -10.63917 -9.81213 -9.45609 -8.68988 -6.86443 -0.28974 0.26862 1.15259 1.36236 1.37166 1.56061 1.99709 2.17751 2.37604 2.69636 3.12696 3.17380 3.55142 3.97526 4.16211 4.19932 4.43474 4.49247 4.60345 4.92592 4.97843 5.16277 5.34271 5.37840 5.44160 5.64965 5.78580 6.11527 6.36094 6.69460 6.87275 8.22037 8.36085 Molecular weight = 232.06amu Principal moments of inertia in cm(-1) A = 0.064576 B = 0.005585 C = 0.005152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.490756 B = 5012.130635 C = 5433.195241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.021 3.979 3 Si 1.014 2.986 4 H -0.250 1.250 5 H -0.261 1.261 6 H -0.262 1.262 7 C -0.468 4.468 8 H 0.098 0.902 9 C 0.262 3.738 10 N -0.459 5.459 11 O 0.016 5.984 12 C 0.169 3.831 13 C -0.013 4.013 14 C -0.093 4.093 15 C -0.091 4.091 16 C -0.117 4.117 17 C 0.109 3.891 18 O -0.503 6.503 19 C -0.128 4.128 20 N -0.529 5.529 21 H 0.288 0.712 22 H 0.129 0.871 23 H 0.173 0.827 24 H 0.169 0.831 25 H 0.413 0.587 26 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.153 -14.786 -1.802 15.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.197 4.197 3 Si 0.832 3.168 4 H -0.173 1.173 5 H -0.186 1.186 6 H -0.187 1.187 7 C -0.508 4.508 8 H 0.116 0.884 9 C 0.011 3.989 10 N -0.189 5.189 11 O -0.025 6.025 12 C -0.050 4.050 13 C -0.016 4.016 14 C -0.113 4.113 15 C -0.109 4.109 16 C -0.136 4.136 17 C 0.064 3.936 18 O -0.316 6.316 19 C -0.149 4.149 20 N -0.269 5.269 21 H 0.098 0.902 22 H 0.147 0.853 23 H 0.190 0.810 24 H 0.187 0.813 25 H 0.273 0.727 26 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.806 -13.970 -1.200 14.137 hybrid contribution -0.209 0.968 -0.463 1.094 sum 1.597 -13.002 -1.663 13.205 Atomic orbital electron populations 1.69987 1.09251 1.30523 1.34355 1.27070 0.95921 1.05164 0.91511 0.84705 0.79000 0.74074 0.79064 1.17317 1.18596 1.18686 1.18944 0.94808 0.87081 1.49967 0.88416 1.22782 0.86516 0.92998 0.96627 1.75535 1.16619 0.91717 1.35036 1.85222 1.34782 1.13379 1.69094 1.26845 0.82685 0.96331 0.99110 1.17348 0.95939 0.82553 1.05734 1.21383 0.95781 0.96065 0.98098 1.21331 1.00338 0.91366 0.97835 1.21930 0.90528 1.02396 0.98709 1.18224 0.87170 0.87780 1.00438 1.84786 1.39452 1.71655 1.35709 1.21554 0.97606 0.94571 1.01147 1.72140 1.29535 1.00357 1.24897 0.90201 0.85330 0.80981 0.81312 0.72715 0.85387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -47.50 11.97 21.82 0.26 -47.24 15 2 C 0.02 1.13 5.49 85.26 0.47 1.60 15 3 Si 1.01 40.46 29.56 68.60 2.03 42.49 15 4 H -0.25 -9.48 7.11 99.48 0.71 -8.78 15 5 H -0.26 -9.87 7.11 99.48 0.71 -9.16 15 6 H -0.26 -9.94 7.11 99.48 0.71 -9.23 15 7 C -0.47 -27.85 9.52 23.56 0.22 -27.63 15 8 H 0.10 5.49 7.85 -2.91 -0.02 5.47 15 9 C 0.26 16.27 7.67 135.01 1.04 17.30 15 10 N -0.46 -28.83 10.46 -59.74 -0.62 -29.46 15 11 O 0.02 0.89 11.09 68.57 0.76 1.65 15 12 C 0.17 8.39 7.99 87.31 0.70 9.09 15 13 C -0.01 -0.50 5.87 -20.10 -0.12 -0.61 15 14 C -0.09 -2.81 9.70 22.53 0.22 -2.59 15 15 C -0.09 -1.83 10.03 22.22 0.22 -1.61 15 16 C -0.12 -2.14 9.98 22.42 0.22 -1.92 15 17 C 0.11 2.53 6.70 22.47 0.15 2.68 15 18 O -0.50 -9.65 13.50 -92.58 -1.25 -10.90 15 19 C -0.13 -3.99 9.66 22.63 0.22 -3.77 15 20 N -0.53 -29.44 11.27 -305.30 -3.44 -32.88 15 21 H 0.29 15.02 8.29 -92.71 -0.77 14.25 15 22 H 0.13 4.11 7.86 -2.91 -0.02 4.09 15 23 H 0.17 2.12 8.06 -2.91 -0.02 2.09 15 24 H 0.17 1.86 8.06 -2.91 -0.02 1.84 15 25 H 0.41 3.64 9.06 -74.06 -0.67 2.97 15 26 H 0.13 4.13 7.93 -2.91 -0.02 4.10 15 Total: -1.00 -77.81 248.89 1.64 -76.17 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: 0.56 Total: 7.64 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: 3.34 Total: -7.47 kcal Atomic # 7 Polarization: -105.78 SS G_CDS: -3.80 Total: -109.58 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: -0.49 Total: -9.25 kcal Atomic # 14 Polarization: 40.46 SS G_CDS: 2.03 Total: 42.49 kcal Total: -77.81 1.64 -76.17 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260955011.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.016 kcal (2) G-P(sol) polarization free energy of solvation -77.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds