Wall clock time and date at job start Mon Mar 30 2020 03:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.76208 * 102.99890 * 2 1 4 4 N 1.31673 * 125.54187 * 359.69254 * 3 2 1 5 5 N 1.40005 * 109.09761 * 180.26137 * 4 3 2 6 6 C 1.46501 * 126.12605 * 180.02562 * 5 4 3 7 7 C 1.37619 * 107.74413 * 0.02562 * 5 4 3 8 8 C 1.40162 * 126.61100 * 179.97438 * 7 5 4 9 9 H 1.07996 * 120.00396 * 325.48629 * 8 7 5 10 10 C 1.40129 * 120.00042 * 145.48444 * 8 7 5 11 11 N 1.30800 * 119.99675 * 338.86099 * 10 8 7 12 12 Si 1.86793 * 120.00172 * 158.86299 * 10 8 7 13 13 H 1.48500 * 109.47259 * 59.99942 * 12 10 8 14 14 H 1.48499 * 109.47110 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.47184 * 299.99852 * 12 10 8 16 16 C 1.39424 * 125.53849 * 179.97438 * 3 2 1 17 17 Cl 1.73605 * 126.27342 * 359.71674 * 16 3 2 18 18 H 1.09001 * 109.47321 * 299.99974 * 1 2 3 19 19 H 1.09006 * 109.47042 * 59.99889 * 1 2 3 20 20 H 1.08997 * 109.47345 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47256 * 269.95633 * 6 5 4 22 22 H 1.09003 * 109.47497 * 29.96107 * 6 5 4 23 23 H 1.08997 * 109.47272 * 149.96350 * 6 5 4 24 24 H 0.97001 * 119.99896 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 7 1.3386 2.7037 -0.0057 5 7 2.0268 3.9229 -0.0097 6 6 1.4209 5.2568 -0.0159 7 6 3.3744 3.6439 -0.0066 8 6 4.4210 4.5761 -0.0094 9 1 4.3125 5.5084 -0.5436 10 6 5.6084 4.2984 0.6811 11 7 5.6139 3.4109 1.6419 12 14 7.1832 5.1957 0.2294 13 1 6.9920 6.6563 0.4174 14 1 8.2890 4.7244 1.1013 15 1 7.5207 4.9194 -1.1901 16 6 3.4981 2.2514 0.0005 17 17 4.9832 1.3524 0.0082 18 1 -0.3634 0.5138 0.8900 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 1.2728 5.5838 -1.0450 22 1 0.4592 5.2215 0.4961 23 1 2.0798 5.9576 0.4966 24 1 6.4357 3.2190 2.1201 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261078711.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:14 Heat of formation + Delta-G solvation = 52.357541 kcal Electronic energy + Delta-G solvation = -12222.581934 eV Core-core repulsion = 9903.363911 eV Total energy + Delta-G solvation = -2319.218024 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 232.013 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.08288 -34.61319 -33.63928 -31.82423 -29.19517 -28.34311 -25.59117 -25.08396 -20.17236 -19.86058 -17.11005 -15.91296 -14.99160 -14.62967 -14.16318 -13.50833 -13.10490 -13.04963 -12.98568 -12.14678 -11.95389 -11.62210 -11.53560 -11.24041 -10.68926 -10.47424 -10.06943 -9.99753 -9.70453 -9.10052 -8.91910 -8.48132 -7.10734 -6.76998 -6.44175 -4.62749 2.29904 2.92837 2.96364 3.08991 3.11275 3.30738 3.78267 3.96653 4.02376 4.66556 5.01563 5.54785 5.62583 5.74846 6.00726 6.16342 6.17817 6.73325 7.00005 7.20561 7.43339 7.80821 8.15918 8.64115 8.84686 9.10889 10.17092 Molecular weight = 232.01amu Principal moments of inertia in cm(-1) A = 0.033737 B = 0.010937 C = 0.008604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.742648 B = 2559.451039 C = 3253.528012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 S -0.066 6.066 3 C 0.090 3.910 4 N -0.375 5.375 5 N -0.421 5.421 6 C 0.132 3.868 7 C 0.299 3.701 8 C -0.474 4.474 9 H 0.084 0.916 10 C 0.093 3.907 11 N -0.750 5.750 12 Si 0.911 3.089 13 H -0.267 1.267 14 H -0.277 1.277 15 H -0.262 1.262 16 C -0.232 4.232 17 Cl -0.068 7.068 18 H 0.077 0.923 19 H 0.077 0.923 20 H 0.093 0.907 21 H 0.046 0.954 22 H 0.065 0.935 23 H 0.078 0.922 24 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.993 -0.676 -1.483 3.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 S 0.163 5.837 3 C -0.181 4.181 4 N -0.203 5.203 5 N -0.210 5.210 6 C -0.011 4.011 7 C 0.178 3.822 8 C -0.510 4.510 9 H 0.102 0.898 10 C -0.133 4.133 11 N -0.373 5.373 12 Si 0.735 3.265 13 H -0.192 1.192 14 H -0.202 1.202 15 H -0.186 1.186 16 C -0.275 4.275 17 Cl -0.040 7.040 18 H 0.096 0.904 19 H 0.096 0.904 20 H 0.112 0.888 21 H 0.065 0.935 22 H 0.084 0.916 23 H 0.097 0.903 24 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.430 -1.425 -1.297 3.934 hybrid contribution 0.844 1.323 -0.089 1.572 sum -2.586 -0.102 -1.386 2.936 Atomic orbital electron populations 1.23359 0.96678 1.04973 1.05700 1.85084 1.04305 0.99957 1.94324 1.23006 0.94030 0.96213 1.04892 1.77161 1.19291 0.88290 1.35508 1.48355 1.04168 1.03518 1.64987 1.21264 0.98267 0.80776 1.00800 1.18124 0.82360 0.91694 0.90029 1.18351 0.96935 1.04163 1.31555 0.89793 1.25595 0.99980 0.94681 0.93001 1.69876 1.29780 1.24659 1.12972 0.86320 0.80276 0.79938 0.80000 1.19154 1.20211 1.18622 1.19688 0.83899 0.90073 1.33870 1.98140 1.34506 1.73565 1.97832 0.90382 0.90414 0.88828 0.93506 0.91587 0.90303 0.90432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 10.37 101.05 1.05 -1.16 14 2 S -0.07 -1.35 22.59 -107.50 -2.43 -3.78 14 3 C 0.09 2.27 7.26 -17.18 -0.12 2.14 14 4 N -0.38 -9.43 12.09 31.32 0.38 -9.05 14 5 N -0.42 -10.40 4.09 -65.36 -0.27 -10.66 14 6 C 0.13 2.50 11.30 59.85 0.68 3.18 14 7 C 0.30 7.99 6.36 -83.96 -0.53 7.46 14 8 C -0.47 -12.14 8.70 -38.15 -0.33 -12.47 14 9 H 0.08 2.01 7.93 -52.49 -0.42 1.60 14 10 C 0.09 2.27 4.62 -17.28 -0.08 2.19 14 11 N -0.75 -19.19 10.62 55.56 0.59 -18.60 14 12 Si 0.91 18.46 29.61 -169.99 -5.03 13.43 14 13 H -0.27 -5.22 7.11 56.52 0.40 -4.82 14 14 H -0.28 -5.50 7.11 56.52 0.40 -5.10 14 15 H -0.26 -5.36 7.11 56.52 0.40 -4.96 14 16 C -0.23 -6.23 6.33 -38.56 -0.24 -6.47 14 17 Cl -0.07 -1.72 25.87 -51.86 -1.34 -3.06 14 18 H 0.08 1.28 8.14 -51.92 -0.42 0.85 14 19 H 0.08 1.25 8.14 -51.92 -0.42 0.83 14 20 H 0.09 1.18 8.14 -51.93 -0.42 0.76 14 21 H 0.05 0.79 8.14 -51.93 -0.42 0.37 14 22 H 0.07 1.12 8.14 -51.93 -0.42 0.70 14 23 H 0.08 1.41 7.84 -51.93 -0.41 1.01 14 24 H 0.28 6.72 8.30 -40.82 -0.34 6.39 14 LS Contribution 245.88 15.07 3.71 3.71 Total: -1.00 -29.47 245.88 -6.06 -35.52 By element: Atomic # 1 Polarization: -0.31 SS G_CDS: -2.07 Total: -2.38 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: 0.41 Total: -5.13 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: 0.70 Total: -38.31 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.03 Total: 13.43 kcal Atomic # 16 Polarization: -1.35 SS G_CDS: -2.43 Total: -3.78 kcal Atomic # 17 Polarization: -1.72 SS G_CDS: -1.34 Total: -3.06 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -29.47 -6.06 -35.52 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261078711.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.882 kcal (2) G-P(sol) polarization free energy of solvation -29.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds