Wall clock time and date at job start Mon Mar 30 2020 03:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.76208 * 102.99890 * 2 1 4 4 N 1.31673 * 125.54187 * 359.69254 * 3 2 1 5 5 N 1.40005 * 109.09761 * 180.26137 * 4 3 2 6 6 C 1.46501 * 126.12605 * 180.02562 * 5 4 3 7 7 C 1.37619 * 107.74413 * 0.02562 * 5 4 3 8 8 C 1.40162 * 126.61100 * 179.97438 * 7 5 4 9 9 H 1.07996 * 120.00396 * 325.48629 * 8 7 5 10 10 C 1.40129 * 120.00042 * 145.48444 * 8 7 5 11 11 N 1.30800 * 119.99675 * 338.86099 * 10 8 7 12 12 Si 1.86793 * 120.00172 * 158.86299 * 10 8 7 13 13 H 1.48500 * 109.47259 * 59.99942 * 12 10 8 14 14 H 1.48499 * 109.47110 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.47184 * 299.99852 * 12 10 8 16 16 C 1.39424 * 125.53849 * 179.97438 * 3 2 1 17 17 Cl 1.73605 * 126.27342 * 359.71674 * 16 3 2 18 18 H 1.09001 * 109.47321 * 299.99974 * 1 2 3 19 19 H 1.09006 * 109.47042 * 59.99889 * 1 2 3 20 20 H 1.08997 * 109.47345 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47256 * 269.95633 * 6 5 4 22 22 H 1.09003 * 109.47497 * 29.96107 * 6 5 4 23 23 H 1.08997 * 109.47272 * 149.96350 * 6 5 4 24 24 H 0.97001 * 119.99896 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 7 1.3386 2.7037 -0.0057 5 7 2.0268 3.9229 -0.0097 6 6 1.4209 5.2568 -0.0159 7 6 3.3744 3.6439 -0.0066 8 6 4.4210 4.5761 -0.0094 9 1 4.3125 5.5084 -0.5436 10 6 5.6084 4.2984 0.6811 11 7 5.6139 3.4109 1.6419 12 14 7.1832 5.1957 0.2294 13 1 6.9920 6.6563 0.4174 14 1 8.2890 4.7244 1.1013 15 1 7.5207 4.9194 -1.1901 16 6 3.4981 2.2514 0.0005 17 17 4.9832 1.3524 0.0082 18 1 -0.3634 0.5138 0.8900 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 1.2728 5.5838 -1.0450 22 1 0.4592 5.2215 0.4961 23 1 2.0798 5.9576 0.4966 24 1 6.4357 3.2190 2.1201 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261078711.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:14 Heat of formation + Delta-G solvation = 34.236090 kcal Electronic energy + Delta-G solvation = -12223.367739 eV Core-core repulsion = 9903.363911 eV Total energy + Delta-G solvation = -2320.003829 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 232.013 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.93689 -36.54333 -35.50754 -33.57129 -31.03830 -29.69602 -27.31551 -26.94045 -22.02987 -21.67976 -18.96920 -17.72790 -16.66092 -16.38440 -15.89575 -15.11222 -14.84910 -14.57423 -14.45904 -13.76825 -13.51079 -13.26287 -13.15886 -12.89716 -12.46863 -12.16742 -11.96222 -11.73077 -11.33050 -10.97078 -10.78650 -10.27273 -8.96915 -8.59885 -8.19454 -6.55893 0.67646 1.19193 1.42189 1.46052 1.54531 1.57749 1.96802 2.13504 2.26542 2.83575 3.14507 4.19649 4.34025 4.40075 4.55697 4.71528 4.88090 4.93829 5.10696 5.34224 5.56493 5.97872 6.26255 6.74828 6.99655 7.21239 8.35623 Molecular weight = 232.01amu Principal moments of inertia in cm(-1) A = 0.033737 B = 0.010937 C = 0.008604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.742648 B = 2559.451039 C = 3253.528012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 S -0.071 6.071 3 C 0.073 3.927 4 N -0.383 5.383 5 N -0.431 5.431 6 C 0.125 3.875 7 C 0.272 3.728 8 C -0.495 4.495 9 H 0.093 0.907 10 C 0.058 3.942 11 N -0.782 5.782 12 Si 0.977 3.023 13 H -0.252 1.252 14 H -0.271 1.271 15 H -0.265 1.265 16 C -0.267 4.267 17 Cl -0.067 7.067 18 H 0.074 0.926 19 H 0.077 0.923 20 H 0.135 0.865 21 H 0.066 0.934 22 H 0.084 0.916 23 H 0.085 0.915 24 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.229 -0.369 -1.717 3.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 S 0.158 5.842 3 C -0.199 4.199 4 N -0.210 5.210 5 N -0.221 5.221 6 C -0.017 4.017 7 C 0.151 3.849 8 C -0.530 4.530 9 H 0.110 0.890 10 C -0.165 4.165 11 N -0.405 5.405 12 Si 0.797 3.203 13 H -0.176 1.176 14 H -0.195 1.195 15 H -0.189 1.189 16 C -0.309 4.309 17 Cl -0.039 7.039 18 H 0.094 0.906 19 H 0.096 0.904 20 H 0.153 0.847 21 H 0.085 0.915 22 H 0.102 0.898 23 H 0.103 0.897 24 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.690 -1.094 -1.529 4.141 hybrid contribution 0.806 1.181 -0.004 1.430 sum -2.884 0.087 -1.533 3.267 Atomic orbital electron populations 1.23465 0.92748 1.07591 1.05548 1.84973 1.08519 0.96819 1.93919 1.23527 0.93719 0.98377 1.04255 1.77063 1.19638 0.88729 1.35567 1.48775 1.03897 1.04826 1.64638 1.21579 0.98961 0.78669 1.02457 1.18534 0.83541 0.92299 0.90573 1.18677 0.97626 1.04567 1.32142 0.88950 1.26414 1.02567 0.95178 0.92322 1.69936 1.30801 1.25961 1.13825 0.85319 0.76226 0.79419 0.79316 1.17607 1.19518 1.18927 1.20106 0.84796 0.90798 1.35249 1.98112 1.34405 1.73487 1.97893 0.90649 0.90358 0.84720 0.91538 0.89756 0.89663 0.89967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.69 10.37 113.37 1.18 -2.51 14 2 S -0.07 -2.83 22.59 -56.49 -1.28 -4.11 14 3 C 0.07 3.65 7.26 85.00 0.62 4.27 14 4 N -0.38 -19.06 12.09 -54.82 -0.66 -19.72 14 5 N -0.43 -21.18 4.09 -360.69 -1.48 -22.66 14 6 C 0.12 4.57 11.30 127.77 1.44 6.02 14 7 C 0.27 14.62 6.36 39.08 0.25 14.87 14 8 C -0.49 -25.24 8.70 23.20 0.20 -25.04 14 9 H 0.09 4.38 7.93 -2.91 -0.02 4.36 14 10 C 0.06 2.80 4.62 85.31 0.39 3.20 14 11 N -0.78 -40.06 10.62 21.86 0.23 -39.83 14 12 Si 0.98 37.08 29.61 68.60 2.03 39.12 14 13 H -0.25 -8.93 7.11 99.48 0.71 -8.22 14 14 H -0.27 -9.90 7.11 99.48 0.71 -9.19 14 15 H -0.26 -10.12 7.11 99.48 0.71 -9.41 14 16 C -0.27 -14.43 6.33 22.93 0.15 -14.28 14 17 Cl -0.07 -3.38 25.87 -2.72 -0.07 -3.45 14 18 H 0.07 2.30 8.14 -2.39 -0.02 2.28 14 19 H 0.08 2.34 8.14 -2.39 -0.02 2.32 14 20 H 0.13 2.88 8.14 -2.39 -0.02 2.86 14 21 H 0.07 2.16 8.14 -2.39 -0.02 2.14 14 22 H 0.08 2.73 8.14 -2.39 -0.02 2.71 14 23 H 0.08 2.98 7.84 -2.39 -0.02 2.96 14 24 H 0.29 13.67 8.30 -92.71 -0.77 12.90 14 Total: -1.00 -62.66 245.88 4.22 -58.44 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: 1.21 Total: 5.70 kcal Atomic # 6 Polarization: -17.71 SS G_CDS: 4.23 Total: -13.49 kcal Atomic # 7 Polarization: -80.30 SS G_CDS: -1.91 Total: -82.21 kcal Atomic # 14 Polarization: 37.08 SS G_CDS: 2.03 Total: 39.12 kcal Atomic # 16 Polarization: -2.83 SS G_CDS: -1.28 Total: -4.11 kcal Atomic # 17 Polarization: -3.38 SS G_CDS: -0.07 Total: -3.45 kcal Total: -62.66 4.22 -58.44 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261078711.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.677 kcal (2) G-P(sol) polarization free energy of solvation -62.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds