Wall clock time and date at job start Mon Mar 30 2020 03:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53010 * 109.46991 * 2 1 4 4 C 1.50694 * 109.47165 * 179.97438 * 3 2 1 5 5 C 1.39908 * 120.32547 * 269.97863 * 4 3 2 6 6 N 1.31718 * 120.13019 * 180.02562 * 5 4 3 7 7 C 1.32905 * 120.91228 * 359.72656 * 6 5 4 8 8 C 1.41834 * 132.57745 * 179.58476 * 7 6 5 9 9 C 1.40709 * 126.67308 * 0.73034 * 8 7 6 10 10 H 1.08000 * 120.00467 * 359.44016 * 9 8 7 11 11 C 1.39705 * 120.00159 * 179.71483 * 9 8 7 12 12 N 1.31117 * 119.99413 * 359.72348 * 11 9 8 13 13 Si 1.86798 * 119.99984 * 179.72884 * 11 9 8 14 14 H 1.48498 * 109.47416 * 59.99815 * 13 11 9 15 15 H 1.48508 * 109.46609 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46903 * 299.99400 * 13 11 9 17 17 C 1.41334 * 106.65152 * 180.47513 * 8 7 6 18 18 N 1.30585 * 108.73649 * 0.26047 * 17 8 7 19 19 N 1.36936 * 120.86146 * 0.58487 * 7 6 5 20 20 C 1.35892 * 120.32688 * 89.99940 * 4 3 2 21 21 H 1.09005 * 109.46974 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47496 * 300.00017 * 1 2 3 23 23 H 1.09001 * 109.47407 * 59.99937 * 1 2 3 24 24 H 1.09001 * 109.47190 * 240.00248 * 2 1 3 25 25 H 1.08996 * 109.47497 * 119.99579 * 2 1 3 26 26 H 1.09001 * 109.46951 * 60.00102 * 3 2 1 27 27 H 1.08996 * 109.46656 * 300.00094 * 3 2 1 28 28 H 1.07999 * 119.93010 * 0.02562 * 5 4 3 29 29 H 0.97001 * 119.99364 * 179.97438 * 12 11 9 30 30 H 1.07999 * 125.62915 * 180.22789 * 17 8 7 31 31 H 1.07994 * 120.44568 * 0.02562 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4426 0.0006 5 6 4.2528 1.4433 1.2086 6 7 5.5699 1.4438 1.2046 7 6 6.2493 1.4383 0.0624 8 6 7.6375 1.4450 -0.2286 9 6 8.6915 1.4459 0.7035 10 1 8.4765 1.4502 1.7619 11 6 10.0163 1.4468 0.2600 12 7 10.2773 1.4415 -1.0249 13 14 11.4155 1.4556 1.4975 14 1 11.3253 0.2468 2.3553 15 1 12.7138 1.4559 0.7765 16 1 11.3198 2.6718 2.3442 17 6 7.7561 1.4447 -1.6370 18 7 6.5590 1.4440 -2.1587 19 7 5.5981 1.4440 -1.1422 20 6 4.2335 1.4425 -1.1720 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5137 0.8900 26 1 1.6766 1.9564 0.8900 27 1 1.6765 1.9563 -0.8900 28 1 3.7166 1.4434 2.1460 29 1 11.1972 1.4426 -1.3328 30 1 8.6836 1.4454 -2.1902 31 1 3.7066 1.4427 -2.1147 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261200434.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:33 Heat of formation + Delta-G solvation = 88.973070 kcal Electronic energy + Delta-G solvation = -15297.929271 eV Core-core repulsion = 12773.530751 eV Total energy + Delta-G solvation = -2524.398520 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.57294 -37.17539 -34.70892 -33.96799 -32.14366 -30.06874 -28.88019 -26.07526 -24.67278 -23.38933 -21.77242 -20.54532 -19.98885 -17.70402 -16.37663 -16.03561 -14.82497 -14.66115 -14.62103 -14.49159 -13.57715 -13.14464 -13.04702 -12.41005 -11.96786 -11.80340 -11.51703 -11.36681 -11.29858 -11.27280 -10.97068 -10.89783 -10.56877 -10.38697 -10.04923 -9.48344 -9.20973 -8.49144 -7.99915 -7.01779 -6.86858 -4.08283 1.83241 2.10825 3.04158 3.04305 3.08730 3.61392 3.87869 4.04956 4.48350 5.08491 5.09099 5.21419 5.34509 5.35596 5.40476 5.57737 5.74543 5.83769 5.92900 5.94570 6.11401 6.21730 6.42974 6.55068 6.76679 6.84454 6.87295 7.19916 7.46012 7.73285 7.99811 8.31652 8.50950 8.73224 9.07961 9.21232 10.09325 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.052677 B = 0.005939 C = 0.005477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.410253 B = 4713.475672 C = 5111.520821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.051 4.051 4 C -0.194 4.194 5 C 0.042 3.958 6 N -0.399 5.399 7 C 0.072 3.928 8 C 0.023 3.977 9 C -0.386 4.386 10 H 0.086 0.914 11 C 0.060 3.940 12 N -0.815 5.815 13 Si 0.931 3.069 14 H -0.264 1.264 15 H -0.277 1.277 16 H -0.264 1.264 17 C 0.033 3.967 18 N -0.317 5.317 19 N -0.343 5.343 20 C 0.130 3.870 21 H 0.050 0.950 22 H 0.053 0.947 23 H 0.052 0.948 24 H 0.059 0.941 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.144 0.856 29 H 0.285 0.715 30 H 0.217 0.783 31 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.475 -0.867 1.130 9.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.090 4.090 4 C -0.202 4.202 5 C -0.142 4.142 6 N -0.107 5.107 7 C -0.151 4.151 8 C 0.012 3.988 9 C -0.418 4.418 10 H 0.104 0.896 11 C -0.155 4.155 12 N -0.443 5.443 13 Si 0.756 3.244 14 H -0.189 1.189 15 H -0.202 1.202 16 H -0.189 1.189 17 C -0.149 4.149 18 N -0.141 5.141 19 N -0.124 5.124 20 C -0.002 4.002 21 H 0.070 0.930 22 H 0.072 0.928 23 H 0.071 0.929 24 H 0.078 0.922 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.162 0.838 29 H 0.096 0.904 30 H 0.233 0.767 31 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -9.121 -0.860 0.551 9.178 hybrid contribution 0.501 -0.007 0.417 0.652 sum -8.620 -0.868 0.967 8.718 Atomic orbital electron populations 1.21788 0.96184 1.01294 1.01587 1.21556 0.94966 0.96909 1.02417 1.20212 0.89983 0.96574 1.02189 1.19800 0.96130 1.11193 0.93057 1.22168 0.89088 1.06574 0.96379 1.67294 1.08451 1.08018 1.26891 1.19994 0.93403 1.20878 0.80829 1.17716 0.87754 1.00313 0.92985 1.18933 0.88932 1.39265 0.94662 0.89574 1.25974 1.00565 0.92731 0.96214 1.69425 1.22296 1.37771 1.14800 0.85963 0.78266 0.80050 0.80144 1.18851 1.20212 1.18862 1.25187 0.94827 1.00410 0.94507 1.76799 0.97925 1.27429 1.11910 1.45918 1.03965 1.55397 1.07147 1.21136 0.80842 0.99358 0.98819 0.93047 0.92794 0.92933 0.92195 0.91773 0.91092 0.91835 0.83844 0.90382 0.76698 0.83769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.91 37.15 0.37 -1.05 16 2 C -0.12 -1.42 5.92 -26.73 -0.16 -1.58 16 3 C -0.05 -0.65 5.36 -27.88 -0.15 -0.80 16 4 C -0.19 -3.48 5.12 -104.84 -0.54 -4.02 16 5 C 0.04 0.85 10.97 -16.98 -0.19 0.66 16 6 N -0.40 -9.90 10.45 -11.72 -0.12 -10.02 16 7 C 0.07 1.94 7.92 -155.52 -1.23 0.71 16 8 C 0.02 0.65 5.97 -106.41 -0.64 0.01 16 9 C -0.39 -10.39 9.38 -38.10 -0.36 -10.75 16 10 H 0.09 2.30 7.84 -52.49 -0.41 1.89 16 11 C 0.06 1.47 5.49 -17.31 -0.10 1.38 16 12 N -0.81 -19.95 10.31 55.54 0.57 -19.38 16 13 Si 0.93 18.54 29.56 -169.99 -5.02 13.52 16 14 H -0.26 -5.24 7.11 56.52 0.40 -4.83 16 15 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 16 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 17 C 0.03 0.88 10.87 -16.90 -0.18 0.70 16 18 N -0.32 -8.23 12.55 30.89 0.39 -7.84 16 19 N -0.34 -8.61 3.88 -11.66 -0.05 -8.65 16 20 C 0.13 2.64 10.96 -16.32 -0.18 2.47 16 21 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 22 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 27 H 0.06 0.74 8.09 -51.93 -0.42 0.32 16 28 H 0.14 2.37 8.06 -52.49 -0.42 1.95 16 29 H 0.29 6.31 8.30 -40.82 -0.34 5.97 16 30 H 0.22 5.59 5.72 -52.49 -0.30 5.29 16 31 H 0.14 2.46 8.06 -52.49 -0.42 2.04 16 LS Contribution 270.79 15.07 4.08 4.08 Total: -1.00 -29.33 270.79 -7.14 -36.47 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -3.65 Total: 4.10 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: -3.34 Total: -12.28 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: 0.79 Total: -45.90 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.02 Total: 13.52 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -29.33 -7.14 -36.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261200434.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.448 kcal (2) G-P(sol) polarization free energy of solvation -29.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds