Wall clock time and date at job start Mon Mar 30 2020 03:00:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 C 1.53010 * 109.46991 * 2 1
4 4 C 1.50694 * 109.47165 * 179.97438 * 3 2 1
5 5 C 1.39908 * 120.32547 * 269.97863 * 4 3 2
6 6 N 1.31718 * 120.13019 * 180.02562 * 5 4 3
7 7 C 1.32905 * 120.91228 * 359.72656 * 6 5 4
8 8 C 1.41834 * 132.57745 * 179.58476 * 7 6 5
9 9 C 1.40709 * 126.67308 * 0.73034 * 8 7 6
10 10 H 1.08000 * 120.00467 * 359.44016 * 9 8 7
11 11 C 1.39705 * 120.00159 * 179.71483 * 9 8 7
12 12 N 1.31117 * 119.99413 * 359.72348 * 11 9 8
13 13 Si 1.86798 * 119.99984 * 179.72884 * 11 9 8
14 14 H 1.48498 * 109.47416 * 59.99815 * 13 11 9
15 15 H 1.48508 * 109.46609 * 180.02562 * 13 11 9
16 16 H 1.48503 * 109.46903 * 299.99400 * 13 11 9
17 17 C 1.41334 * 106.65152 * 180.47513 * 8 7 6
18 18 N 1.30585 * 108.73649 * 0.26047 * 17 8 7
19 19 N 1.36936 * 120.86146 * 0.58487 * 7 6 5
20 20 C 1.35892 * 120.32688 * 89.99940 * 4 3 2
21 21 H 1.09005 * 109.46974 * 179.97438 * 1 2 3
22 22 H 1.08995 * 109.47496 * 300.00017 * 1 2 3
23 23 H 1.09001 * 109.47407 * 59.99937 * 1 2 3
24 24 H 1.09001 * 109.47190 * 240.00248 * 2 1 3
25 25 H 1.08996 * 109.47497 * 119.99579 * 2 1 3
26 26 H 1.09001 * 109.46951 * 60.00102 * 3 2 1
27 27 H 1.08996 * 109.46656 * 300.00094 * 3 2 1
28 28 H 1.07999 * 119.93010 * 0.02562 * 5 4 3
29 29 H 0.97001 * 119.99364 * 179.97438 * 12 11 9
30 30 H 1.07999 * 125.62915 * 180.22789 * 17 8 7
31 31 H 1.07994 * 120.44568 * 0.02562 * 20 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 6 3.5469 1.4426 0.0006
5 6 4.2528 1.4433 1.2086
6 7 5.5699 1.4438 1.2046
7 6 6.2493 1.4383 0.0624
8 6 7.6375 1.4450 -0.2286
9 6 8.6915 1.4459 0.7035
10 1 8.4765 1.4502 1.7619
11 6 10.0163 1.4468 0.2600
12 7 10.2773 1.4415 -1.0249
13 14 11.4155 1.4556 1.4975
14 1 11.3253 0.2468 2.3553
15 1 12.7138 1.4559 0.7765
16 1 11.3198 2.6718 2.3442
17 6 7.7561 1.4447 -1.6370
18 7 6.5590 1.4440 -2.1587
19 7 5.5981 1.4440 -1.1422
20 6 4.2335 1.4425 -1.1720
21 1 -0.3633 -1.0277 -0.0005
22 1 -0.3634 0.5138 0.8899
23 1 -0.3634 0.5138 -0.8900
24 1 1.8933 -0.5138 -0.8900
25 1 1.8933 -0.5137 0.8900
26 1 1.6766 1.9564 0.8900
27 1 1.6765 1.9563 -0.8900
28 1 3.7166 1.4434 2.1460
29 1 11.1972 1.4426 -1.3328
30 1 8.6836 1.4454 -2.1902
31 1 3.7066 1.4427 -2.1147
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000261200434.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:00:33
Heat of formation + Delta-G solvation = 88.973070 kcal
Electronic energy + Delta-G solvation = -15297.929271 eV
Core-core repulsion = 12773.530751 eV
Total energy + Delta-G solvation = -2524.398520 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 231.107 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-40.57294 -37.17539 -34.70892 -33.96799 -32.14366 -30.06874 -28.88019 -26.07526
-24.67278 -23.38933 -21.77242 -20.54532 -19.98885 -17.70402 -16.37663 -16.03561
-14.82497 -14.66115 -14.62103 -14.49159 -13.57715 -13.14464 -13.04702 -12.41005
-11.96786 -11.80340 -11.51703 -11.36681 -11.29858 -11.27280 -10.97068 -10.89783
-10.56877 -10.38697 -10.04923 -9.48344 -9.20973 -8.49144 -7.99915 -7.01779
-6.86858 -4.08283 1.83241 2.10825 3.04158 3.04305 3.08730 3.61392
3.87869 4.04956 4.48350 5.08491 5.09099 5.21419 5.34509 5.35596
5.40476 5.57737 5.74543 5.83769 5.92900 5.94570 6.11401 6.21730
6.42974 6.55068 6.76679 6.84454 6.87295 7.19916 7.46012 7.73285
7.99811 8.31652 8.50950 8.73224 9.07961 9.21232 10.09325
Molecular weight = 231.11amu
Principal moments of inertia in cm(-1)
A = 0.052677 B = 0.005939 C = 0.005477
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 531.410253 B = 4713.475672 C = 5111.520821
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C -0.121 4.121
3 C -0.051 4.051
4 C -0.194 4.194
5 C 0.042 3.958
6 N -0.399 5.399
7 C 0.072 3.928
8 C 0.023 3.977
9 C -0.386 4.386
10 H 0.086 0.914
11 C 0.060 3.940
12 N -0.815 5.815
13 Si 0.931 3.069
14 H -0.264 1.264
15 H -0.277 1.277
16 H -0.264 1.264
17 C 0.033 3.967
18 N -0.317 5.317
19 N -0.343 5.343
20 C 0.130 3.870
21 H 0.050 0.950
22 H 0.053 0.947
23 H 0.052 0.948
24 H 0.059 0.941
25 H 0.063 0.937
26 H 0.070 0.930
27 H 0.063 0.937
28 H 0.144 0.856
29 H 0.285 0.715
30 H 0.217 0.783
31 H 0.145 0.855
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.475 -0.867 1.130 9.582
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.158 4.158
3 C -0.090 4.090
4 C -0.202 4.202
5 C -0.142 4.142
6 N -0.107 5.107
7 C -0.151 4.151
8 C 0.012 3.988
9 C -0.418 4.418
10 H 0.104 0.896
11 C -0.155 4.155
12 N -0.443 5.443
13 Si 0.756 3.244
14 H -0.189 1.189
15 H -0.202 1.202
16 H -0.189 1.189
17 C -0.149 4.149
18 N -0.141 5.141
19 N -0.124 5.124
20 C -0.002 4.002
21 H 0.070 0.930
22 H 0.072 0.928
23 H 0.071 0.929
24 H 0.078 0.922
25 H 0.082 0.918
26 H 0.089 0.911
27 H 0.082 0.918
28 H 0.162 0.838
29 H 0.096 0.904
30 H 0.233 0.767
31 H 0.162 0.838
Dipole moment (debyes) X Y Z Total
from point charges -9.121 -0.860 0.551 9.178
hybrid contribution 0.501 -0.007 0.417 0.652
sum -8.620 -0.868 0.967 8.718
Atomic orbital electron populations
1.21788 0.96184 1.01294 1.01587 1.21556 0.94966 0.96909 1.02417
1.20212 0.89983 0.96574 1.02189 1.19800 0.96130 1.11193 0.93057
1.22168 0.89088 1.06574 0.96379 1.67294 1.08451 1.08018 1.26891
1.19994 0.93403 1.20878 0.80829 1.17716 0.87754 1.00313 0.92985
1.18933 0.88932 1.39265 0.94662 0.89574 1.25974 1.00565 0.92731
0.96214 1.69425 1.22296 1.37771 1.14800 0.85963 0.78266 0.80050
0.80144 1.18851 1.20212 1.18862 1.25187 0.94827 1.00410 0.94507
1.76799 0.97925 1.27429 1.11910 1.45918 1.03965 1.55397 1.07147
1.21136 0.80842 0.99358 0.98819 0.93047 0.92794 0.92933 0.92195
0.91773 0.91092 0.91835 0.83844 0.90382 0.76698 0.83769
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.42 9.91 37.15 0.37 -1.05 16
2 C -0.12 -1.42 5.92 -26.73 -0.16 -1.58 16
3 C -0.05 -0.65 5.36 -27.88 -0.15 -0.80 16
4 C -0.19 -3.48 5.12 -104.84 -0.54 -4.02 16
5 C 0.04 0.85 10.97 -16.98 -0.19 0.66 16
6 N -0.40 -9.90 10.45 -11.72 -0.12 -10.02 16
7 C 0.07 1.94 7.92 -155.52 -1.23 0.71 16
8 C 0.02 0.65 5.97 -106.41 -0.64 0.01 16
9 C -0.39 -10.39 9.38 -38.10 -0.36 -10.75 16
10 H 0.09 2.30 7.84 -52.49 -0.41 1.89 16
11 C 0.06 1.47 5.49 -17.31 -0.10 1.38 16
12 N -0.81 -19.95 10.31 55.54 0.57 -19.38 16
13 Si 0.93 18.54 29.56 -169.99 -5.02 13.52 16
14 H -0.26 -5.24 7.11 56.52 0.40 -4.83 16
15 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16
16 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16
17 C 0.03 0.88 10.87 -16.90 -0.18 0.70 16
18 N -0.32 -8.23 12.55 30.89 0.39 -7.84 16
19 N -0.34 -8.61 3.88 -11.66 -0.05 -8.65 16
20 C 0.13 2.64 10.96 -16.32 -0.18 2.47 16
21 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16
22 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16
23 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16
24 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16
25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16
26 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16
27 H 0.06 0.74 8.09 -51.93 -0.42 0.32 16
28 H 0.14 2.37 8.06 -52.49 -0.42 1.95 16
29 H 0.29 6.31 8.30 -40.82 -0.34 5.97 16
30 H 0.22 5.59 5.72 -52.49 -0.30 5.29 16
31 H 0.14 2.46 8.06 -52.49 -0.42 2.04 16
LS Contribution 270.79 15.07 4.08 4.08
Total: -1.00 -29.33 270.79 -7.14 -36.47
By element:
Atomic # 1 Polarization: 7.75 SS G_CDS: -3.65 Total: 4.10 kcal
Atomic # 6 Polarization: -8.93 SS G_CDS: -3.34 Total: -12.28 kcal
Atomic # 7 Polarization: -46.69 SS G_CDS: 0.79 Total: -45.90 kcal
Atomic # 14 Polarization: 18.54 SS G_CDS: -5.02 Total: 13.52 kcal
Total LS contribution 4.08 Total: 4.08 kcal
Total: -29.33 -7.14 -36.47 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261200434.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 125.448 kcal
(2) G-P(sol) polarization free energy of solvation -29.334 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.114 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.141 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.475 kcal
(6) G-S(sol) free energy of system = (1) + (5) 88.973 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds