Wall clock time and date at job start Mon Mar 30 2020 03:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53010 * 109.46991 * 2 1 4 4 C 1.50694 * 109.47165 * 179.97438 * 3 2 1 5 5 C 1.39908 * 120.32547 * 269.97863 * 4 3 2 6 6 N 1.31718 * 120.13019 * 180.02562 * 5 4 3 7 7 C 1.32905 * 120.91228 * 359.72656 * 6 5 4 8 8 C 1.41834 * 132.57745 * 179.58476 * 7 6 5 9 9 C 1.40709 * 126.67308 * 0.73034 * 8 7 6 10 10 H 1.08000 * 120.00467 * 359.44016 * 9 8 7 11 11 C 1.39705 * 120.00159 * 179.71483 * 9 8 7 12 12 N 1.31117 * 119.99413 * 359.72348 * 11 9 8 13 13 Si 1.86798 * 119.99984 * 179.72884 * 11 9 8 14 14 H 1.48498 * 109.47416 * 59.99815 * 13 11 9 15 15 H 1.48508 * 109.46609 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46903 * 299.99400 * 13 11 9 17 17 C 1.41334 * 106.65152 * 180.47513 * 8 7 6 18 18 N 1.30585 * 108.73649 * 0.26047 * 17 8 7 19 19 N 1.36936 * 120.86146 * 0.58487 * 7 6 5 20 20 C 1.35892 * 120.32688 * 89.99940 * 4 3 2 21 21 H 1.09005 * 109.46974 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47496 * 300.00017 * 1 2 3 23 23 H 1.09001 * 109.47407 * 59.99937 * 1 2 3 24 24 H 1.09001 * 109.47190 * 240.00248 * 2 1 3 25 25 H 1.08996 * 109.47497 * 119.99579 * 2 1 3 26 26 H 1.09001 * 109.46951 * 60.00102 * 3 2 1 27 27 H 1.08996 * 109.46656 * 300.00094 * 3 2 1 28 28 H 1.07999 * 119.93010 * 0.02562 * 5 4 3 29 29 H 0.97001 * 119.99364 * 179.97438 * 12 11 9 30 30 H 1.07999 * 125.62915 * 180.22789 * 17 8 7 31 31 H 1.07994 * 120.44568 * 0.02562 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4426 0.0006 5 6 4.2528 1.4433 1.2086 6 7 5.5699 1.4438 1.2046 7 6 6.2493 1.4383 0.0624 8 6 7.6375 1.4450 -0.2286 9 6 8.6915 1.4459 0.7035 10 1 8.4765 1.4502 1.7619 11 6 10.0163 1.4468 0.2600 12 7 10.2773 1.4415 -1.0249 13 14 11.4155 1.4556 1.4975 14 1 11.3253 0.2468 2.3553 15 1 12.7138 1.4559 0.7765 16 1 11.3198 2.6718 2.3442 17 6 7.7561 1.4447 -1.6370 18 7 6.5590 1.4440 -2.1587 19 7 5.5981 1.4440 -1.1422 20 6 4.2335 1.4425 -1.1720 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5137 0.8900 26 1 1.6766 1.9564 0.8900 27 1 1.6765 1.9563 -0.8900 28 1 3.7166 1.4434 2.1460 29 1 11.1972 1.4426 -1.3328 30 1 8.6836 1.4454 -2.1902 31 1 3.7066 1.4427 -2.1147 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261200434.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:32 Heat of formation + Delta-G solvation = 72.027251 kcal Electronic energy + Delta-G solvation = -15298.664097 eV Core-core repulsion = 12773.530751 eV Total energy + Delta-G solvation = -2525.133346 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.44949 -38.86884 -35.98994 -35.79327 -33.83568 -31.58561 -30.72837 -27.54439 -26.35168 -25.11411 -23.15079 -22.06954 -21.69096 -19.54869 -18.17151 -17.78410 -16.50575 -16.38182 -16.22287 -15.59190 -15.02143 -14.76592 -14.22707 -13.92466 -13.64544 -13.17517 -13.08363 -12.98252 -12.92607 -12.77711 -12.32599 -12.11523 -11.98543 -11.72418 -11.47213 -11.36040 -10.95822 -10.30370 -9.81753 -8.89268 -8.63431 -6.02524 0.10743 0.32834 1.41708 1.44396 1.54467 1.81941 2.15333 2.24248 2.70682 3.40836 3.56951 3.73601 3.96456 4.05743 4.20410 4.34597 4.56883 4.69674 4.83109 4.93024 4.94460 5.06193 5.11382 5.14422 5.33104 5.39570 5.48505 5.55970 5.68466 5.79834 6.17316 6.36420 6.61936 6.86823 7.14627 7.35642 8.36099 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.052677 B = 0.005939 C = 0.005477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.410253 B = 4713.475672 C = 5111.520821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.120 4.120 3 C -0.046 4.046 4 C -0.176 4.176 5 C 0.082 3.918 6 N -0.449 5.449 7 C 0.061 3.939 8 C -0.025 4.025 9 C -0.433 4.433 10 H 0.071 0.929 11 C 0.023 3.977 12 N -0.842 5.842 13 Si 1.001 2.999 14 H -0.263 1.263 15 H -0.261 1.261 16 H -0.263 1.263 17 C 0.015 3.985 18 N -0.337 5.337 19 N -0.341 5.341 20 C 0.108 3.892 21 H 0.055 0.945 22 H 0.064 0.936 23 H 0.060 0.940 24 H 0.049 0.951 25 H 0.057 0.943 26 H 0.096 0.904 27 H 0.085 0.915 28 H 0.190 0.810 29 H 0.293 0.707 30 H 0.213 0.787 31 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.430 -0.777 2.130 12.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.157 4.157 3 C -0.085 4.085 4 C -0.183 4.183 5 C -0.103 4.103 6 N -0.159 5.159 7 C -0.162 4.162 8 C -0.036 4.036 9 C -0.466 4.466 10 H 0.090 0.910 11 C -0.188 4.188 12 N -0.471 5.471 13 Si 0.822 3.178 14 H -0.188 1.188 15 H -0.185 1.185 16 H -0.188 1.188 17 C -0.165 4.165 18 N -0.163 5.163 19 N -0.121 5.121 20 C -0.023 4.023 21 H 0.074 0.926 22 H 0.084 0.916 23 H 0.079 0.921 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.115 0.885 27 H 0.103 0.897 28 H 0.207 0.793 29 H 0.104 0.896 30 H 0.229 0.771 31 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -12.068 -0.771 1.510 12.187 hybrid contribution 0.837 -0.046 0.196 0.861 sum -11.232 -0.817 1.705 11.390 Atomic orbital electron populations 1.21742 0.93992 1.02051 1.02601 1.21528 0.96840 0.95686 1.01689 1.20382 0.85518 0.97941 1.04612 1.20475 0.99064 1.07481 0.91284 1.23320 0.88106 0.99583 0.99295 1.67432 1.10493 1.11718 1.26216 1.20292 0.93822 1.20076 0.82042 1.18086 0.88900 1.02908 0.93701 1.18954 0.90407 1.43373 0.93832 0.91046 1.26765 1.02082 0.91809 0.98158 1.69440 1.23166 1.38490 1.16027 0.84947 0.75494 0.79736 0.77650 1.18795 1.18471 1.18797 1.25068 0.95137 1.01846 0.94430 1.76719 0.97932 1.29717 1.11947 1.46310 1.05539 1.53617 1.06608 1.22077 0.79235 0.99396 1.01607 0.92554 0.91648 0.92078 0.93225 0.92414 0.88534 0.89692 0.79300 0.89595 0.77095 0.80369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.91 71.98 0.71 -1.34 16 2 C -0.12 -2.27 5.92 30.60 0.18 -2.09 16 3 C -0.05 -0.93 5.36 29.85 0.16 -0.77 16 4 C -0.18 -5.61 5.12 -20.01 -0.10 -5.71 16 5 C 0.08 3.02 10.97 85.11 0.93 3.95 16 6 N -0.45 -22.09 10.45 -190.99 -2.00 -24.09 16 7 C 0.06 3.37 7.92 134.28 1.06 4.43 16 8 C -0.02 -1.47 5.97 -21.02 -0.13 -1.60 16 9 C -0.43 -24.87 9.38 23.23 0.22 -24.65 16 10 H 0.07 4.09 7.84 -2.91 -0.02 4.07 16 11 C 0.02 1.19 5.49 85.15 0.47 1.66 16 12 N -0.84 -43.40 10.31 21.80 0.22 -43.17 16 13 Si 1.00 39.29 29.56 68.60 2.03 41.32 16 14 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 15 H -0.26 -9.39 7.11 99.48 0.71 -8.69 16 16 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 17 C 0.01 0.84 10.87 85.64 0.93 1.77 16 18 N -0.34 -18.11 12.55 -56.17 -0.71 -18.82 16 19 N -0.34 -17.16 3.88 -190.80 -0.74 -17.90 16 20 C 0.11 4.12 10.96 83.42 0.91 5.04 16 21 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 22 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 23 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.10 1.58 8.10 -2.39 -0.02 1.56 16 27 H 0.08 1.47 8.09 -2.39 -0.02 1.45 16 28 H 0.19 5.18 8.06 -2.91 -0.02 5.16 16 29 H 0.29 13.48 8.30 -92.71 -0.77 12.71 16 30 H 0.21 11.80 5.72 -2.91 -0.02 11.79 16 31 H 0.18 5.50 8.06 -2.91 -0.02 5.48 16 Total: -1.00 -68.22 270.79 5.30 -62.93 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: 1.13 Total: 19.04 kcal Atomic # 6 Polarization: -24.66 SS G_CDS: 5.35 Total: -19.31 kcal Atomic # 7 Polarization: -100.76 SS G_CDS: -3.22 Total: -103.98 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 2.03 Total: 41.32 kcal Total: -68.22 5.30 -62.93 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261200434.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.955 kcal (2) G-P(sol) polarization free energy of solvation -68.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds