Wall clock time and date at job start Mon Mar 30 2020 03:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.39875 * 125.45692 * 2 1 4 4 C 1.30245 * 110.08452 * 180.02562 * 3 2 1 5 5 C 1.50702 * 126.10597 * 179.97438 * 4 3 2 6 6 H 1.09005 * 109.46680 * 195.02746 * 5 4 3 7 7 N 1.46893 * 109.47204 * 315.02647 * 5 4 3 8 8 C 1.50698 * 109.47109 * 75.02834 * 5 4 3 9 9 H 1.08004 * 120.00231 * 359.97438 * 8 5 4 10 10 C 1.37871 * 120.00175 * 179.97438 * 8 5 4 11 11 N 1.31521 * 120.00023 * 359.97438 * 10 8 5 12 12 Si 1.86806 * 120.00196 * 179.97438 * 10 8 5 13 13 H 1.48501 * 109.46718 * 60.00122 * 12 10 8 14 14 H 1.48497 * 109.46879 * 179.97438 * 12 10 8 15 15 H 1.48494 * 109.46820 * 300.00091 * 12 10 8 16 16 C 1.45924 * 107.78502 * 359.97438 * 4 3 2 17 17 C 1.39944 * 134.03048 * 179.97438 * 16 4 3 18 18 C 1.36463 * 119.63954 * 180.02562 * 17 16 4 19 19 C 1.38973 * 120.62626 * 0.02562 * 18 17 16 20 20 C 1.36591 * 120.81434 * 0.02562 * 19 18 17 21 21 C 1.37036 * 125.46519 * 180.02562 * 2 1 3 22 22 H 1.09002 * 109.46849 * 89.97757 * 1 2 3 23 23 H 1.09008 * 109.46924 * 209.97519 * 1 2 3 24 24 H 1.08999 * 109.47715 * 329.97496 * 1 2 3 25 25 H 1.00906 * 111.00534 * 296.04661 * 7 5 4 26 26 H 1.00897 * 111.00496 * 60.00261 * 7 5 4 27 27 H 0.96998 * 119.99871 * 180.02562 * 11 10 8 28 28 H 1.08002 * 120.17991 * 0.02562 * 17 16 4 29 29 H 1.08000 * 119.68994 * 180.02562 * 18 17 16 30 30 H 1.07997 * 119.58988 * 180.02562 * 19 18 17 31 31 H 1.07997 * 120.07087 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2764 1.1394 0.0000 4 6 3.5322 0.7941 -0.0005 5 6 4.7113 1.7327 -0.0013 6 1 5.6136 1.1823 -0.2681 7 7 4.4837 2.8040 -0.9802 8 6 4.8764 2.3329 1.3711 9 1 4.1953 2.0622 2.1644 10 6 5.8967 3.2277 1.6140 11 7 6.7264 3.5570 0.6481 12 14 6.1009 3.9723 3.3150 13 1 6.3301 2.8895 4.3051 14 1 7.2636 4.8961 3.3146 15 1 4.8719 4.7227 3.6776 16 6 3.5937 -0.6639 -0.0003 17 6 4.6399 -1.5933 -0.0011 18 6 4.3567 -2.9282 -0.0011 19 6 3.0399 -3.3726 -0.0009 20 6 2.0018 -2.4848 -0.0012 21 6 2.2601 -1.1161 -0.0005 22 1 -0.3633 0.0004 -1.0277 23 1 -0.3633 -0.8903 0.5135 24 1 -0.3634 0.8897 0.5142 25 1 4.4340 2.4331 -1.9173 26 1 3.6523 3.3293 -0.7547 27 1 7.4445 4.1863 0.8191 28 1 5.6659 -1.2559 -0.0017 29 1 5.1634 -3.6462 -0.0013 30 1 2.8349 -4.4329 -0.0005 31 1 0.9831 -2.8434 -0.0006 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261290855.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:23 Heat of formation + Delta-G solvation = 67.638830 kcal Electronic energy + Delta-G solvation = -15625.121968 eV Core-core repulsion = 13099.798326 eV Total energy + Delta-G solvation = -2525.323642 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.10704 -38.10773 -36.69756 -34.23039 -32.87896 -31.23661 -30.61573 -28.50373 -27.00049 -24.50098 -23.47486 -22.65639 -20.43633 -18.57166 -17.88988 -17.61813 -16.55176 -16.33552 -16.09360 -15.95567 -15.13199 -14.87245 -14.49401 -14.38301 -13.84540 -13.60775 -13.23128 -12.87525 -12.75275 -12.68812 -12.45481 -12.04477 -11.82767 -11.62545 -11.34194 -10.69089 -10.55962 -9.55195 -9.11439 -8.65498 -8.01316 -6.22939 0.09779 0.64689 1.41646 1.43514 1.50468 1.62690 1.65878 2.46386 2.93844 3.21572 3.61924 3.70928 3.91538 4.19586 4.33565 4.39080 4.41647 4.51613 4.55695 4.61831 4.76813 5.02504 5.06344 5.36132 5.49564 5.63374 5.69117 5.71206 6.00703 6.09990 6.28790 6.53824 6.83718 6.98667 7.16361 7.47911 9.02294 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.028568 B = 0.007940 C = 0.007237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.881498 B = 3525.687308 C = 3868.044924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.427 5.427 3 N -0.292 5.292 4 C 0.083 3.917 5 C 0.303 3.697 6 H 0.034 0.966 7 N -0.809 5.809 8 C -0.542 4.542 9 H 0.034 0.966 10 C 0.041 3.959 11 N -0.875 5.875 12 Si 0.950 3.050 13 H -0.273 1.273 14 H -0.277 1.277 15 H -0.278 1.278 16 C -0.212 4.212 17 C -0.056 4.056 18 C -0.163 4.163 19 C -0.065 4.065 20 C -0.149 4.149 21 C 0.107 3.893 22 H 0.079 0.921 23 H 0.108 0.892 24 H 0.082 0.918 25 H 0.310 0.690 26 H 0.324 0.676 27 H 0.260 0.740 28 H 0.118 0.882 29 H 0.153 0.847 30 H 0.170 0.830 31 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.734 -13.776 -1.802 16.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.215 5.215 3 N -0.105 5.105 4 C -0.097 4.097 5 C 0.190 3.810 6 H 0.052 0.948 7 N -0.334 5.334 8 C -0.582 4.582 9 H 0.053 0.947 10 C -0.164 4.164 11 N -0.510 5.510 12 Si 0.775 3.225 13 H -0.198 1.198 14 H -0.202 1.202 15 H -0.204 1.204 16 C -0.220 4.220 17 C -0.076 4.076 18 C -0.182 4.182 19 C -0.085 4.085 20 C -0.171 4.171 21 C -0.008 4.008 22 H 0.098 0.902 23 H 0.126 0.874 24 H 0.101 0.899 25 H 0.120 0.880 26 H 0.136 0.864 27 H 0.069 0.931 28 H 0.136 0.864 29 H 0.171 0.829 30 H 0.187 0.813 31 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -9.913 -12.350 -1.629 15.919 hybrid contribution -0.177 -0.198 0.612 0.667 sum -10.089 -12.547 -1.017 16.133 Atomic orbital electron populations 1.21960 0.72427 1.05129 1.03816 1.48567 1.06844 1.00757 1.65341 1.76459 1.02840 1.09329 1.21865 1.25651 0.94554 0.93914 0.95579 1.17436 0.85985 0.85188 0.92341 0.94834 1.59081 1.44217 1.26974 1.03145 1.20859 1.14452 1.28375 0.94491 0.94718 1.25600 0.94923 0.96057 0.99774 1.70191 1.15810 1.32309 1.32678 0.85779 0.77548 0.78434 0.80709 1.19781 1.20169 1.20380 1.20338 0.94892 0.93060 1.13742 1.20622 0.97608 0.93287 0.96133 1.21002 0.98405 0.94225 1.04586 1.21167 0.91223 1.00911 0.95177 1.20180 1.01814 0.87203 1.07854 1.19337 0.90313 0.90942 1.00252 0.90247 0.87361 0.89904 0.87961 0.86390 0.93135 0.86421 0.82887 0.81261 0.82893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.54 11.40 127.77 1.46 4.00 16 2 N -0.43 -15.67 4.05 -361.04 -1.46 -17.13 16 3 N -0.29 -13.37 12.26 -43.70 -0.54 -13.91 16 4 C 0.08 3.99 6.19 44.79 0.28 4.26 16 5 C 0.30 16.25 3.12 43.42 0.14 16.38 16 6 H 0.03 1.94 8.14 -2.38 -0.02 1.92 16 7 N -0.81 -41.31 8.53 -174.96 -1.49 -42.80 16 8 C -0.54 -31.73 8.71 25.60 0.22 -31.51 16 9 H 0.03 2.10 7.74 -2.91 -0.02 2.07 16 10 C 0.04 2.35 5.39 84.65 0.46 2.81 16 11 N -0.87 -51.89 12.77 21.45 0.27 -51.62 16 12 Si 0.95 45.21 29.54 68.60 2.03 47.24 16 13 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 14 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 15 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 16 C -0.21 -8.93 6.33 -20.24 -0.13 -9.06 16 17 C -0.06 -2.01 10.07 22.27 0.22 -1.79 16 18 C -0.16 -4.28 9.97 22.03 0.22 -4.06 16 19 C -0.06 -1.42 9.96 22.06 0.22 -1.20 16 20 C -0.15 -3.81 9.97 22.14 0.22 -3.59 16 21 C 0.11 3.83 6.87 39.21 0.27 4.09 16 22 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 23 H 0.11 1.84 8.14 -2.38 -0.02 1.82 16 24 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.31 14.30 9.06 -89.69 -0.81 13.48 16 26 H 0.32 16.50 8.86 -89.70 -0.79 15.71 16 27 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 28 H 0.12 4.30 8.06 -2.91 -0.02 4.28 16 29 H 0.15 2.97 8.06 -2.91 -0.02 2.94 16 30 H 0.17 2.17 8.06 -2.91 -0.02 2.14 16 31 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -71.71 275.20 1.93 -69.78 By element: Atomic # 1 Polarization: 28.55 SS G_CDS: -0.45 Total: 28.10 kcal Atomic # 6 Polarization: -23.23 SS G_CDS: 3.57 Total: -19.65 kcal Atomic # 7 Polarization: -122.25 SS G_CDS: -3.22 Total: -125.47 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -71.71 1.93 -69.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261290855.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.415 kcal (2) G-P(sol) polarization free energy of solvation -71.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds