Wall clock time and date at job start Mon Mar 30 2020 03:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42893 * 114.00008 * 2 1 4 4 C 1.53002 * 109.47335 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46797 * 64.99986 * 4 3 2 6 6 C 1.36937 * 119.99940 * 269.99722 * 5 4 3 7 7 H 1.07998 * 119.99509 * 146.35878 * 6 5 4 8 8 C 1.38807 * 120.00025 * 326.36687 * 6 5 4 9 9 N 1.31617 * 120.00338 * 336.48626 * 8 6 5 10 10 Si 1.86807 * 119.99777 * 156.48723 * 8 6 5 11 11 H 1.48499 * 109.46937 * 60.00214 * 10 8 6 12 12 H 1.48503 * 109.46835 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47317 * 299.99409 * 10 8 6 14 14 C 1.46497 * 119.99905 * 90.00287 * 5 4 3 15 15 H 1.09002 * 110.46000 * 8.42415 * 14 5 4 16 16 C 1.54476 * 110.51003 * 131.17492 * 14 5 4 17 17 O 1.44427 * 104.80446 * 94.66674 * 16 14 5 18 18 C 1.44425 * 105.27354 * 40.50759 * 17 16 14 19 19 C 1.54470 * 104.80507 * 319.49331 * 18 17 16 20 20 H 1.09001 * 110.51405 * 142.62460 * 19 18 17 21 21 O 1.42908 * 110.62844 * 265.27387 * 19 18 17 22 22 H 1.08995 * 109.47185 * 60.00335 * 1 2 3 23 23 H 1.08999 * 109.46900 * 299.99700 * 1 2 3 24 24 H 1.09007 * 109.46675 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47014 * 300.00004 * 3 2 1 26 26 H 1.09000 * 109.47303 * 60.00017 * 3 2 1 27 27 H 1.08998 * 109.46965 * 184.99867 * 4 3 2 28 28 H 1.08999 * 109.46856 * 305.00417 * 4 3 2 29 29 H 0.97005 * 120.00315 * 175.77190 * 9 8 6 30 30 H 1.09000 * 110.37338 * 213.49477 * 16 14 5 31 31 H 1.08997 * 110.37621 * 335.83410 * 16 14 5 32 32 H 1.08997 * 110.37481 * 200.65609 * 18 17 16 33 33 H 1.09006 * 110.46128 * 78.36752 * 18 17 16 34 34 H 0.96700 * 113.99415 * 294.71396 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.0979 -0.7975 -1.3345 7 1 3.8839 -1.3025 -2.2648 8 6 4.4955 -1.5284 -0.2234 9 7 5.1849 -0.9464 0.7349 10 14 4.0523 -3.3381 -0.0884 11 1 4.6398 -4.0783 -1.2338 12 1 4.5903 -3.8859 1.1827 13 1 2.5751 -3.4886 -0.1068 14 6 4.2883 1.3998 -2.4130 15 1 4.2844 2.4540 -2.1361 16 6 5.6532 1.0007 -3.0164 17 8 5.3319 0.0675 -4.0708 18 6 4.1572 0.6091 -4.7132 19 6 3.2815 1.1362 -3.5550 20 1 2.7815 2.0606 -3.8443 21 8 2.3231 0.1524 -3.1605 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0278 -0.0005 25 1 1.6886 1.8463 -0.8900 26 1 1.6886 1.8463 0.8900 27 1 3.9784 2.1765 0.0902 28 1 3.8508 0.5685 0.8427 29 1 5.4100 -1.4401 1.5390 30 1 6.1579 1.8761 -3.4252 31 1 6.2760 0.5206 -2.2616 32 1 3.6308 -0.1718 -5.2620 33 1 4.4309 1.4241 -5.3833 34 1 1.6664 -0.0517 -3.8403 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316911002.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:42 Heat of formation + Delta-G solvation = -120.470803 kcal Electronic energy + Delta-G solvation = -18094.051600 eV Core-core repulsion = 15220.969241 eV Total energy + Delta-G solvation = -2873.082359 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 231.130 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.50060 -38.51501 -36.66936 -36.34273 -33.18565 -31.29345 -29.69408 -28.66561 -27.06428 -25.47190 -23.65747 -22.50550 -21.23836 -18.53774 -17.96255 -17.27281 -16.91922 -16.75319 -16.55880 -16.24064 -15.74257 -15.44484 -14.91049 -14.53560 -13.85315 -13.69702 -13.35201 -13.10670 -12.77605 -12.69982 -12.58343 -12.34633 -12.22351 -12.03403 -11.65254 -11.52075 -11.31406 -10.85238 -10.31909 -10.24276 -10.11080 -8.39300 -7.57327 -5.08992 1.48773 1.51595 1.59527 2.68920 3.26671 3.29957 3.48344 3.50362 3.88799 4.02875 4.20015 4.37067 4.48067 4.51641 4.61365 4.67358 4.70442 4.81601 4.86334 4.87827 4.93884 5.00183 5.01388 5.05600 5.27875 5.90334 6.04119 6.10017 6.63063 6.82853 7.22775 7.43164 8.10830 8.56899 9.37661 Molecular weight = 231.13amu Principal moments of inertia in cm(-1) A = 0.019779 B = 0.014465 C = 0.011042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.305552 B = 1935.262192 C = 2535.220461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.066 3.934 4 C 0.131 3.869 5 N -0.560 5.560 6 C -0.160 4.160 7 H 0.049 0.951 8 C -0.051 4.051 9 N -0.928 5.928 10 Si 0.932 3.068 11 H -0.289 1.289 12 H -0.301 1.301 13 H -0.292 1.292 14 C 0.132 3.868 15 H 0.092 0.908 16 C 0.045 3.955 17 O -0.398 6.398 18 C 0.016 3.984 19 C 0.057 3.943 20 H 0.084 0.916 21 O -0.537 6.537 22 H 0.042 0.958 23 H 0.041 0.959 24 H 0.074 0.926 25 H 0.037 0.963 26 H 0.037 0.963 27 H 0.053 0.947 28 H 0.072 0.928 29 H 0.239 0.761 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.366 0.634 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.122 8.569 -7.626 13.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C -0.013 4.013 4 C 0.004 3.996 5 N -0.278 5.278 6 C -0.291 4.291 7 H 0.066 0.934 8 C -0.244 4.244 9 N -0.577 5.577 10 Si 0.765 3.235 11 H -0.216 1.216 12 H -0.228 1.228 13 H -0.219 1.219 14 C 0.023 3.977 15 H 0.110 0.890 16 C -0.033 4.033 17 O -0.317 6.317 18 C -0.061 4.061 19 C -0.005 4.005 20 H 0.101 0.899 21 O -0.340 6.340 22 H 0.061 0.939 23 H 0.060 0.940 24 H 0.092 0.908 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.048 0.952 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.107 0.893 33 H 0.101 0.899 34 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -6.423 8.132 -7.007 12.509 hybrid contribution -0.805 -0.810 -0.078 1.144 sum -7.228 7.322 -7.085 12.492 Atomic orbital electron populations 1.22710 0.82164 1.01965 0.99654 1.88175 1.19022 1.28569 1.95030 1.23099 0.96692 0.83955 0.97557 1.21120 0.89964 0.96366 0.92118 1.43569 1.74372 1.02141 1.07731 1.18750 1.31241 0.82677 0.96424 0.93364 1.25270 0.99664 0.99320 1.00178 1.70125 1.40708 1.37512 1.09400 0.85856 0.77691 0.84320 0.75667 1.21619 1.22804 1.21914 1.22200 0.91767 0.95139 0.88582 0.89013 1.23792 0.98037 0.92315 0.89164 1.89104 1.46145 1.48227 1.48208 1.24237 0.87118 0.99267 0.95475 1.23764 0.90743 0.91389 0.94649 0.89863 1.87101 1.43271 1.60732 1.42893 0.93906 0.94020 0.90789 0.94516 0.94469 0.92835 0.91056 0.95182 0.90559 0.91974 0.89307 0.89874 0.78838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.06 11.01 113.37 1.25 2.31 16 2 O -0.39 -17.56 10.18 -148.98 -1.52 -19.07 16 3 C 0.07 2.63 6.28 71.98 0.45 3.09 16 4 C 0.13 6.05 5.73 86.38 0.50 6.55 16 5 N -0.56 -26.84 1.98 -672.41 -1.33 -28.17 16 6 C -0.16 -8.91 6.71 84.03 0.56 -8.34 16 7 H 0.05 2.89 6.83 -2.91 -0.02 2.87 16 8 C -0.05 -3.01 4.94 84.86 0.42 -2.59 16 9 N -0.93 -56.44 11.32 21.65 0.25 -56.19 16 10 Si 0.93 49.67 29.62 68.60 2.03 51.70 16 11 H -0.29 -15.23 7.11 99.48 0.71 -14.52 16 12 H -0.30 -16.02 7.11 99.48 0.71 -15.31 16 13 H -0.29 -15.62 7.11 99.48 0.71 -14.91 16 14 C 0.13 5.04 3.66 46.01 0.17 5.21 16 15 H 0.09 3.01 7.82 -2.39 -0.02 2.99 16 16 C 0.05 1.76 6.69 72.48 0.48 2.25 16 17 O -0.40 -16.32 11.33 -148.98 -1.69 -18.01 16 18 C 0.02 0.48 7.38 72.48 0.53 1.02 16 19 C 0.06 1.80 4.37 31.61 0.14 1.94 16 20 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 21 O -0.54 -19.77 10.59 -148.98 -1.58 -21.35 16 22 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 25 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.05 2.21 7.89 -2.39 -0.02 2.19 16 28 H 0.07 3.96 5.31 -2.39 -0.01 3.95 16 29 H 0.24 14.40 8.32 -92.70 -0.77 13.63 16 30 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 31 H 0.06 2.97 7.80 -2.39 -0.02 2.96 16 32 H 0.09 2.51 8.09 -2.39 -0.02 2.49 16 33 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 34 H 0.37 9.78 9.12 -74.06 -0.68 9.11 16 Total: -1.00 -71.58 279.43 1.08 -70.51 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: 0.41 Total: 9.17 kcal Atomic # 6 Polarization: 6.91 SS G_CDS: 4.50 Total: 11.42 kcal Atomic # 7 Polarization: -83.27 SS G_CDS: -1.09 Total: -84.36 kcal Atomic # 8 Polarization: -53.65 SS G_CDS: -4.78 Total: -58.43 kcal Atomic # 14 Polarization: 49.67 SS G_CDS: 2.03 Total: 51.70 kcal Total: -71.58 1.08 -70.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316911002.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.964 kcal (2) G-P(sol) polarization free energy of solvation -71.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds