Wall clock time and date at job start Mon Mar 30 2020 03:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99773 * 2 1 4 4 C 1.53002 * 109.47081 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47003 * 64.99959 * 4 3 2 6 6 C 1.36937 * 119.99776 * 93.64562 * 5 4 3 7 7 H 1.08004 * 119.99454 * 216.80020 * 6 5 4 8 8 C 1.38809 * 120.00443 * 36.79303 * 6 5 4 9 9 N 1.31618 * 119.99853 * 214.50033 * 8 6 5 10 10 Si 1.86800 * 120.00090 * 34.49288 * 8 6 5 11 11 H 1.48502 * 109.46747 * 94.25564 * 10 8 6 12 12 H 1.48493 * 109.47495 * 214.25999 * 10 8 6 13 13 H 1.48498 * 109.47013 * 334.26304 * 10 8 6 14 14 C 1.46499 * 119.99788 * 273.63745 * 5 4 3 15 15 H 1.08994 * 110.44083 * 356.81720 * 14 5 4 16 16 C 1.54103 * 110.48626 * 119.37119 * 14 5 4 17 17 O 1.43745 * 107.29573 * 116.64434 * 16 14 5 18 18 C 1.44380 * 106.97475 * 26.51174 * 17 16 14 19 19 C 1.54815 * 110.48544 * 234.13453 * 14 5 4 20 20 H 1.08998 * 110.91041 * 338.64270 * 19 14 5 21 21 O 1.42895 * 110.91112 * 102.25056 * 19 14 5 22 22 H 1.09003 * 109.46877 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46922 * 299.99149 * 1 2 3 24 24 H 1.08996 * 109.47333 * 59.99727 * 1 2 3 25 25 H 1.08995 * 109.46848 * 60.00435 * 3 2 1 26 26 H 1.08997 * 109.47337 * 300.00257 * 3 2 1 27 27 H 1.09004 * 109.46981 * 305.00462 * 4 3 2 28 28 H 1.08998 * 109.47168 * 185.00156 * 4 3 2 29 29 H 0.97000 * 119.99541 * 179.97438 * 9 8 6 30 30 H 1.08998 * 109.87739 * 236.06797 * 16 14 5 31 31 H 1.09001 * 109.87422 * 357.06604 * 16 14 5 32 32 H 1.08996 * 110.61931 * 78.44033 * 18 17 16 33 33 H 1.09002 * 110.61831 * 201.28535 * 18 17 16 34 34 H 0.96696 * 114.00304 * 180.02562 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2528 6 6 4.3375 1.3490 -2.3152 7 1 4.0965 1.0398 -3.3215 8 6 5.0140 2.5416 -2.0988 9 7 4.7934 3.5750 -2.8835 10 14 6.2371 2.6801 -0.6937 11 1 7.6037 2.3890 -1.1967 12 1 6.1973 4.0559 -0.1364 13 1 5.8828 1.7051 0.3689 14 6 4.0288 -0.8950 -1.3681 15 1 3.7638 -1.3617 -0.4195 16 6 3.0908 -1.3819 -2.4896 17 8 3.9114 -2.0015 -3.4941 18 6 5.0994 -2.4829 -2.8299 19 6 5.4357 -1.3515 -1.8253 20 1 5.9672 -0.5381 -2.3192 21 8 6.1914 -1.8566 -0.7227 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 1.6886 1.8463 0.8900 26 1 1.6886 1.8464 -0.8899 27 1 3.8515 0.5682 0.8409 28 1 3.9785 2.1766 0.0889 29 1 5.2659 4.4085 -2.7320 30 1 2.3818 -2.1075 -2.0909 31 1 2.5535 -0.5352 -2.9170 32 1 4.8939 -3.4149 -2.3035 33 1 5.9109 -2.6182 -3.5450 34 1 7.0804 -2.1547 -0.9588 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316911004.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:44 Heat of formation + Delta-G solvation = -105.977848 kcal Electronic energy + Delta-G solvation = -17747.071556 eV Core-core repulsion = 14874.617659 eV Total energy + Delta-G solvation = -2872.453897 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 231.130 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.08065 -37.36082 -35.57221 -35.13016 -31.75726 -30.07321 -28.15187 -27.49503 -25.75232 -23.82572 -22.11502 -21.48335 -19.68755 -17.21065 -16.63512 -15.98775 -15.66940 -15.38044 -14.87968 -14.45413 -14.35960 -14.28487 -13.76723 -13.09532 -12.64464 -12.49990 -12.12817 -11.91361 -11.78045 -11.33456 -11.11803 -10.75023 -10.57488 -10.25209 -10.21525 -10.02295 -9.56952 -9.53035 -9.06634 -9.04872 -8.42569 -6.84200 -6.13253 -3.40293 3.33234 3.46986 3.55612 4.35541 4.38797 4.50832 4.71246 5.05095 5.31567 5.38245 5.54653 5.61339 5.67818 5.74665 5.91408 5.96121 5.99327 6.10964 6.12608 6.24495 6.28089 6.44229 6.57363 6.67285 6.73932 6.86323 7.47696 7.74005 7.97137 8.10648 8.37609 8.95952 9.67158 10.11804 11.02023 Molecular weight = 231.13amu Principal moments of inertia in cm(-1) A = 0.016825 B = 0.014896 C = 0.010107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.801120 B = 1879.277130 C = 2769.628208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.384 6.384 3 C 0.041 3.959 4 C 0.155 3.845 5 N -0.582 5.582 6 C -0.281 4.281 7 H 0.081 0.919 8 C 0.049 3.951 9 N -0.875 5.875 10 Si 0.841 3.159 11 H -0.290 1.290 12 H -0.294 1.294 13 H -0.258 1.258 14 C 0.162 3.838 15 H 0.079 0.921 16 C 0.046 3.954 17 O -0.378 6.378 18 C 0.019 3.981 19 C 0.049 3.951 20 H 0.092 0.908 21 O -0.560 6.560 22 H 0.075 0.925 23 H 0.030 0.970 24 H 0.036 0.964 25 H 0.032 0.968 26 H 0.057 0.943 27 H 0.045 0.955 28 H 0.069 0.931 29 H 0.264 0.736 30 H 0.047 0.953 31 H 0.095 0.905 32 H 0.056 0.944 33 H 0.082 0.918 34 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.784 -8.063 4.816 9.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.302 6.302 3 C -0.037 4.037 4 C 0.028 3.972 5 N -0.303 5.303 6 C -0.408 4.408 7 H 0.099 0.901 8 C -0.153 4.153 9 N -0.514 5.514 10 Si 0.667 3.333 11 H -0.217 1.217 12 H -0.221 1.221 13 H -0.183 1.183 14 C 0.053 3.947 15 H 0.097 0.903 16 C -0.032 4.032 17 O -0.297 6.297 18 C -0.059 4.059 19 C -0.012 4.012 20 H 0.109 0.891 21 O -0.364 6.364 22 H 0.094 0.906 23 H 0.049 0.951 24 H 0.055 0.945 25 H 0.050 0.950 26 H 0.075 0.925 27 H 0.064 0.936 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.113 0.887 32 H 0.074 0.926 33 H 0.100 0.900 34 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -3.259 -7.883 4.857 9.816 hybrid contribution 1.141 0.410 0.590 1.348 sum -2.119 -7.474 5.447 9.487 Atomic orbital electron populations 1.22622 0.82872 1.01584 0.99274 1.87891 1.18096 1.28996 1.95257 1.23426 0.97393 0.83803 0.99122 1.21237 0.89491 0.97825 0.88597 1.44042 1.74698 0.99401 1.12154 1.18646 1.32884 1.01253 0.88022 0.90113 1.25456 0.97902 0.95660 0.96329 1.70075 1.39596 1.01002 1.40705 0.87425 0.84254 0.76962 0.84667 1.21733 1.22104 1.18262 1.21500 0.89944 0.85958 0.97284 0.90283 1.23608 0.93448 0.96659 0.89509 1.88823 1.31694 1.76666 1.32517 1.24060 0.88944 0.96959 0.95891 1.24142 0.95658 0.94706 0.86671 0.89065 1.86498 1.29869 1.84538 1.35507 0.90613 0.95101 0.94514 0.95011 0.92474 0.93638 0.91259 0.92653 0.93527 0.88705 0.92627 0.89966 0.78679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.38 -7.00 10.07 -35.23 -0.35 -7.35 16 3 C 0.04 0.79 6.28 37.16 0.23 1.02 16 4 C 0.15 3.36 4.40 -4.04 -0.02 3.34 16 5 N -0.58 -13.61 2.01 -163.92 -0.33 -13.94 16 6 C -0.28 -7.50 7.89 -15.06 -0.12 -7.62 16 7 H 0.08 2.38 7.54 -52.48 -0.40 1.98 16 8 C 0.05 1.36 5.00 -17.43 -0.09 1.27 16 9 N -0.88 -25.63 13.97 55.49 0.78 -24.85 16 10 Si 0.84 20.91 26.32 -169.99 -4.47 16.44 16 11 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 12 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 13 H -0.26 -6.26 5.95 56.52 0.34 -5.93 16 14 C 0.16 3.40 2.75 -66.40 -0.18 3.21 16 15 H 0.08 1.66 7.83 -51.93 -0.41 1.25 16 16 C 0.05 0.93 7.05 37.73 0.27 1.19 16 17 O -0.38 -7.68 11.52 -35.23 -0.41 -8.09 16 18 C 0.02 0.33 7.45 38.21 0.28 0.62 16 19 C 0.05 0.96 4.07 -24.72 -0.10 0.86 16 20 H 0.09 2.02 6.98 -51.93 -0.36 1.66 16 21 O -0.56 -9.97 13.42 -35.23 -0.47 -10.44 16 22 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 23 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.05 0.95 8.00 -51.93 -0.42 0.54 16 28 H 0.07 1.59 4.55 -51.93 -0.24 1.35 16 29 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.09 2.10 7.27 -51.93 -0.38 1.72 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.37 4.68 9.12 45.56 0.42 5.09 16 LS Contribution 278.12 15.07 4.19 4.19 Total: -1.00 -30.67 278.12 -4.04 -34.71 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -4.36 Total: 3.85 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: 1.39 Total: 5.48 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 0.45 Total: -38.79 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -1.23 Total: -25.89 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.47 Total: 16.44 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.67 -4.04 -34.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316911004.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.267 kcal (2) G-P(sol) polarization free energy of solvation -30.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds