Wall clock time and date at job start Mon Mar 30 2020 03:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99773 * 2 1 4 4 C 1.53002 * 109.47081 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47003 * 64.99959 * 4 3 2 6 6 C 1.36937 * 119.99776 * 93.64562 * 5 4 3 7 7 H 1.08004 * 119.99454 * 216.80020 * 6 5 4 8 8 C 1.38809 * 120.00443 * 36.79303 * 6 5 4 9 9 N 1.31618 * 119.99853 * 214.50033 * 8 6 5 10 10 Si 1.86800 * 120.00090 * 34.49288 * 8 6 5 11 11 H 1.48502 * 109.46747 * 94.25564 * 10 8 6 12 12 H 1.48493 * 109.47495 * 214.25999 * 10 8 6 13 13 H 1.48498 * 109.47013 * 334.26304 * 10 8 6 14 14 C 1.46499 * 119.99788 * 273.63745 * 5 4 3 15 15 H 1.08994 * 110.44083 * 356.81720 * 14 5 4 16 16 C 1.54103 * 110.48626 * 119.37119 * 14 5 4 17 17 O 1.43745 * 107.29573 * 116.64434 * 16 14 5 18 18 C 1.44380 * 106.97475 * 26.51174 * 17 16 14 19 19 C 1.54815 * 110.48544 * 234.13453 * 14 5 4 20 20 H 1.08998 * 110.91041 * 338.64270 * 19 14 5 21 21 O 1.42895 * 110.91112 * 102.25056 * 19 14 5 22 22 H 1.09003 * 109.46877 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46922 * 299.99149 * 1 2 3 24 24 H 1.08996 * 109.47333 * 59.99727 * 1 2 3 25 25 H 1.08995 * 109.46848 * 60.00435 * 3 2 1 26 26 H 1.08997 * 109.47337 * 300.00257 * 3 2 1 27 27 H 1.09004 * 109.46981 * 305.00462 * 4 3 2 28 28 H 1.08998 * 109.47168 * 185.00156 * 4 3 2 29 29 H 0.97000 * 119.99541 * 179.97438 * 9 8 6 30 30 H 1.08998 * 109.87739 * 236.06797 * 16 14 5 31 31 H 1.09001 * 109.87422 * 357.06604 * 16 14 5 32 32 H 1.08996 * 110.61931 * 78.44033 * 18 17 16 33 33 H 1.09002 * 110.61831 * 201.28535 * 18 17 16 34 34 H 0.96696 * 114.00304 * 180.02562 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2528 6 6 4.3375 1.3490 -2.3152 7 1 4.0965 1.0398 -3.3215 8 6 5.0140 2.5416 -2.0988 9 7 4.7934 3.5750 -2.8835 10 14 6.2371 2.6801 -0.6937 11 1 7.6037 2.3890 -1.1967 12 1 6.1973 4.0559 -0.1364 13 1 5.8828 1.7051 0.3689 14 6 4.0288 -0.8950 -1.3681 15 1 3.7638 -1.3617 -0.4195 16 6 3.0908 -1.3819 -2.4896 17 8 3.9114 -2.0015 -3.4941 18 6 5.0994 -2.4829 -2.8299 19 6 5.4357 -1.3515 -1.8253 20 1 5.9672 -0.5381 -2.3192 21 8 6.1914 -1.8566 -0.7227 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 1.6886 1.8463 0.8900 26 1 1.6886 1.8464 -0.8899 27 1 3.8515 0.5682 0.8409 28 1 3.9785 2.1766 0.0889 29 1 5.2659 4.4085 -2.7320 30 1 2.3818 -2.1075 -2.0909 31 1 2.5535 -0.5352 -2.9170 32 1 4.8939 -3.4149 -2.3035 33 1 5.9109 -2.6182 -3.5450 34 1 7.0804 -2.1547 -0.9588 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316911004.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:43 Heat of formation + Delta-G solvation = -131.366830 kcal Electronic energy + Delta-G solvation = -17748.172505 eV Core-core repulsion = 14874.617659 eV Total energy + Delta-G solvation = -2873.554846 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 231.130 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.65775 -38.79923 -37.04823 -36.83988 -33.80581 -31.65747 -29.69597 -29.14858 -27.07084 -25.68145 -23.64408 -23.11356 -21.45215 -18.79303 -18.41968 -17.66143 -17.13898 -16.88941 -16.56863 -16.03014 -15.95578 -15.71981 -15.36322 -14.84130 -14.39701 -14.16720 -13.71706 -13.48742 -13.38295 -12.86972 -12.70191 -12.51056 -12.27815 -12.06903 -11.78413 -11.72728 -11.39118 -11.09715 -10.69624 -10.45818 -10.38860 -8.74677 -8.26504 -5.49890 1.33420 1.44236 1.55435 2.43608 2.87908 2.91775 3.05595 3.18138 3.75805 3.83574 4.06436 4.32423 4.37645 4.40885 4.45432 4.49728 4.60795 4.65680 4.69903 4.82207 4.84017 4.88132 4.93049 5.06492 5.08155 5.20437 5.88326 6.00294 6.22843 6.39359 6.90421 6.97583 7.63658 8.10027 8.93487 Molecular weight = 231.13amu Principal moments of inertia in cm(-1) A = 0.016825 B = 0.014896 C = 0.010107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.801120 B = 1879.277130 C = 2769.628208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.400 6.400 3 C 0.053 3.947 4 C 0.148 3.852 5 N -0.591 5.591 6 C -0.259 4.259 7 H 0.041 0.959 8 C 0.002 3.998 9 N -0.923 5.923 10 Si 0.905 3.095 11 H -0.297 1.297 12 H -0.295 1.295 13 H -0.246 1.246 14 C 0.157 3.843 15 H 0.086 0.914 16 C 0.056 3.944 17 O -0.399 6.399 18 C 0.025 3.975 19 C 0.055 3.945 20 H 0.060 0.940 21 O -0.565 6.565 22 H 0.098 0.902 23 H 0.050 0.950 24 H 0.032 0.968 25 H 0.061 0.939 26 H 0.030 0.970 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.264 0.736 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.105 0.895 34 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.745 -9.808 6.522 12.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.319 6.319 3 C -0.026 4.026 4 C 0.022 3.978 5 N -0.312 5.312 6 C -0.388 4.388 7 H 0.059 0.941 8 C -0.197 4.197 9 N -0.564 5.564 10 Si 0.731 3.269 11 H -0.225 1.225 12 H -0.222 1.222 13 H -0.169 1.169 14 C 0.049 3.951 15 H 0.104 0.896 16 C -0.023 4.023 17 O -0.318 6.318 18 C -0.052 4.052 19 C -0.006 4.006 20 H 0.078 0.922 21 O -0.373 6.373 22 H 0.116 0.884 23 H 0.069 0.931 24 H 0.051 0.949 25 H 0.079 0.921 26 H 0.049 0.951 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.123 0.877 34 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -3.213 -9.668 6.591 12.134 hybrid contribution 1.062 0.845 0.044 1.357 sum -2.151 -8.824 6.634 11.247 Atomic orbital electron populations 1.22848 0.80556 1.03367 1.00049 1.87839 1.20551 1.28128 1.95394 1.23106 0.95744 0.84496 0.99215 1.21302 0.91315 0.97117 0.88052 1.44074 1.75016 1.00330 1.11806 1.18351 1.31631 1.01277 0.87573 0.94103 1.25885 0.99377 0.95450 0.98970 1.70158 1.41205 1.01665 1.43408 0.86414 0.81325 0.76960 0.82169 1.22471 1.22164 1.16936 1.21626 0.91272 0.84382 0.97810 0.89624 1.23426 0.93518 0.96316 0.88997 1.88798 1.32837 1.76834 1.33316 1.24206 0.88406 0.96712 0.95878 1.23833 0.94550 0.94929 0.87329 0.92250 1.86439 1.31567 1.84407 1.34854 0.88383 0.93134 0.94892 0.92136 0.95113 0.92389 0.92727 0.92686 0.91228 0.91732 0.90047 0.87668 0.75947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 11.01 113.37 1.25 1.97 16 2 O -0.40 -13.81 10.07 -148.98 -1.50 -15.31 16 3 C 0.05 1.97 6.28 71.98 0.45 2.42 16 4 C 0.15 6.24 4.40 86.38 0.38 6.62 16 5 N -0.59 -27.48 2.01 -672.53 -1.35 -28.83 16 6 C -0.26 -14.22 7.89 84.03 0.66 -13.56 16 7 H 0.04 2.54 7.54 -2.91 -0.02 2.52 16 8 C 0.00 0.12 5.00 84.86 0.42 0.54 16 9 N -0.92 -55.65 13.97 21.65 0.30 -55.35 16 10 Si 0.90 43.88 26.32 68.60 1.81 45.68 16 11 H -0.30 -14.60 7.11 99.48 0.71 -13.90 16 12 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 13 H -0.25 -11.28 5.95 99.48 0.59 -10.69 16 14 C 0.16 6.39 2.75 45.98 0.13 6.52 16 15 H 0.09 3.39 7.83 -2.39 -0.02 3.37 16 16 C 0.06 2.20 7.05 72.36 0.51 2.71 16 17 O -0.40 -15.72 11.52 -148.98 -1.72 -17.44 16 18 C 0.03 0.80 7.45 72.67 0.54 1.34 16 19 C 0.05 2.05 4.07 31.90 0.13 2.18 16 20 H 0.06 2.62 6.98 -2.39 -0.02 2.60 16 21 O -0.57 -18.45 13.42 -148.98 -2.00 -20.45 16 22 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 23 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 24 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.06 2.30 8.00 -2.38 -0.02 2.28 16 28 H 0.05 2.45 4.55 -2.39 -0.01 2.44 16 29 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 30 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.06 2.93 7.27 -2.39 -0.02 2.91 16 32 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 34 H 0.39 8.66 9.12 -74.06 -0.68 7.98 16 Total: -1.00 -66.38 278.12 0.32 -66.06 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 0.30 Total: 14.88 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: 4.48 Total: 10.75 kcal Atomic # 7 Polarization: -83.13 SS G_CDS: -1.05 Total: -84.18 kcal Atomic # 8 Polarization: -47.98 SS G_CDS: -5.22 Total: -53.19 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 1.81 Total: 45.68 kcal Total: -66.38 0.32 -66.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316911004.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.302 kcal (2) G-P(sol) polarization free energy of solvation -66.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds