Wall clock time and date at job start Mon Mar 30 2020 03:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00003 * 2 1 4 4 H 1.48497 * 109.47531 * 270.00344 * 3 2 1 5 5 H 1.48507 * 109.47062 * 150.00507 * 3 2 1 6 6 H 1.48498 * 109.47281 * 30.00796 * 3 2 1 7 7 C 1.37870 * 120.00070 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00719 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99930 * 359.97438 * 7 2 1 10 10 O 1.42903 * 109.47072 * 180.02562 * 9 7 2 11 11 C 1.42909 * 113.99866 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46716 * 180.02562 * 11 10 9 13 13 N 1.46900 * 109.47422 * 63.26146 * 12 11 10 14 14 C 1.47438 * 110.99921 * 55.46001 * 13 12 11 15 15 C 1.54320 * 107.23326 * 123.26224 * 14 13 12 16 16 H 1.09009 * 110.85225 * 263.82781 * 15 14 13 17 17 O 1.42895 * 110.70985 * 140.66658 * 15 14 13 18 18 C 1.55134 * 103.01895 * 22.27897 * 15 14 13 19 19 H 1.09002 * 110.99132 * 82.44297 * 18 15 14 20 20 O 1.42900 * 110.99259 * 206.25883 * 18 15 14 21 21 C 1.47843 * 110.99955 * 176.30194 * 13 12 11 22 22 H 0.96998 * 120.00447 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47267 * 300.00059 * 9 7 2 24 24 H 1.09003 * 109.46979 * 60.00809 * 9 7 2 25 25 H 1.08994 * 109.46728 * 300.00138 * 11 10 9 26 26 H 1.08999 * 109.46674 * 60.00246 * 11 10 9 27 27 H 1.09006 * 109.46997 * 183.25909 * 12 11 10 28 28 H 1.09005 * 109.47207 * 303.25681 * 12 11 10 29 29 H 1.09003 * 109.88663 * 242.66345 * 14 13 12 30 30 H 1.09005 * 109.89226 * 3.85254 * 14 13 12 31 31 H 0.96705 * 114.00252 * 66.39632 * 17 15 14 32 32 H 0.96694 * 114.00108 * 173.72664 * 20 18 15 33 33 H 1.08998 * 110.37696 * 332.46653 * 21 13 12 34 34 H 1.09003 * 110.37166 * 94.69475 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 3.5467 1.4401 0.7000 6 1 1.4467 2.6526 0.7002 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.5650 -4.8754 -0.0011 12 6 2.6480 -5.9562 -0.0004 13 7 3.4339 -5.8611 1.2370 14 6 2.5626 -5.9412 2.4237 15 6 3.0682 -7.1188 3.2835 16 1 2.4972 -8.0239 3.0760 17 8 3.0069 -6.7925 4.6734 18 6 4.5405 -7.2812 2.8225 19 1 5.1907 -6.5722 3.3351 20 8 4.9934 -8.6223 3.0188 21 6 4.4347 -6.9466 1.3137 22 1 -0.4851 -0.8400 0.0004 23 1 0.6246 -2.5571 0.8897 24 1 0.6240 -2.5567 -0.8904 25 1 0.9446 -4.9826 0.8886 26 1 0.9452 -4.9821 -0.8914 27 1 2.1804 -6.9391 -0.0593 28 1 3.3039 -5.8138 -0.8593 29 1 2.6246 -5.0134 2.9925 30 1 1.5326 -6.1220 2.1161 31 1 2.1081 -6.6800 5.0118 32 1 5.8735 -8.7969 2.6584 33 1 4.0932 -7.8178 0.7548 34 1 5.3961 -6.6040 0.9310 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395502219.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:28 Heat of formation + Delta-G solvation = -138.154614 kcal Electronic energy + Delta-G solvation = -16510.204246 eV Core-core repulsion = 13636.355059 eV Total energy + Delta-G solvation = -2873.849186 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 231.130 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.77767 -37.14750 -36.23470 -35.73084 -33.00179 -30.99942 -28.46906 -27.47874 -26.04251 -22.89442 -22.48216 -21.36278 -20.29504 -18.16634 -17.07685 -16.95762 -16.10677 -16.02803 -15.31939 -14.64998 -14.30981 -13.76990 -13.71293 -13.45048 -13.27641 -12.93656 -12.67408 -12.36955 -11.96304 -11.66513 -11.37826 -11.05060 -10.68378 -10.59850 -10.37520 -10.32207 -10.10295 -10.05984 -8.82838 -8.61790 -8.23987 -8.21978 -6.44794 -4.12815 3.44227 3.48813 3.59373 3.65492 3.78996 4.27959 4.31608 4.46166 4.75187 4.80493 4.86617 5.07632 5.20319 5.32186 5.33212 5.41314 5.46793 5.68687 5.74871 5.80027 5.90367 6.03749 6.15261 6.75253 6.89749 7.01518 7.13547 7.36672 7.45335 7.92146 8.20484 8.67498 8.83329 9.57764 10.95527 Molecular weight = 231.13amu Principal moments of inertia in cm(-1) A = 0.037848 B = 0.005057 C = 0.004939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.619067 B = 5535.411788 C = 5667.744032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.016 3.984 3 Si 1.081 2.919 4 H -0.286 1.286 5 H -0.286 1.286 6 H -0.283 1.283 7 C -0.593 4.593 8 H 0.061 0.939 9 C 0.185 3.815 10 O -0.370 6.370 11 C 0.059 3.941 12 C 0.055 3.945 13 N -0.504 5.504 14 C 0.012 3.988 15 C 0.090 3.910 16 H 0.069 0.931 17 O -0.555 6.555 18 C 0.100 3.900 19 H 0.085 0.915 20 O -0.560 6.560 21 C 0.012 3.988 22 H 0.266 0.734 23 H -0.007 1.007 24 H -0.008 1.008 25 H 0.037 0.963 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.065 0.935 31 H 0.382 0.618 32 H 0.381 0.619 33 H 0.055 0.945 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.893 -16.093 3.898 17.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.187 4.187 3 Si 0.909 3.091 4 H -0.213 1.213 5 H -0.212 1.212 6 H -0.209 1.209 7 C -0.631 4.631 8 H 0.080 0.920 9 C 0.110 3.890 10 O -0.289 6.289 11 C -0.019 4.019 12 C -0.073 4.073 13 N -0.230 5.230 14 C -0.116 4.116 15 C 0.030 3.970 16 H 0.087 0.913 17 O -0.360 6.360 18 C 0.041 3.959 19 H 0.103 0.897 20 O -0.365 6.365 21 C -0.117 4.117 22 H 0.076 0.924 23 H 0.011 0.989 24 H 0.010 0.990 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.104 0.896 29 H 0.113 0.887 30 H 0.083 0.917 31 H 0.229 0.771 32 H 0.229 0.771 33 H 0.073 0.927 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.215 -14.032 4.128 15.893 hybrid contribution -0.774 -2.449 -0.372 2.595 sum 5.441 -16.481 3.756 17.758 Atomic orbital electron populations 1.70774 1.06859 1.30358 1.46982 1.25932 0.96404 1.02702 0.93624 0.83371 0.74625 0.74258 0.76878 1.21281 1.21181 1.20882 1.21929 0.95527 0.90337 1.55283 0.92034 1.20284 0.89487 0.85375 0.93850 1.88004 1.33948 1.12016 1.94909 1.22416 0.93984 0.86471 0.99042 1.22360 0.95803 0.96010 0.93087 1.63491 1.14474 1.43465 1.01565 1.23637 0.96460 0.99242 0.92270 1.22975 0.95559 0.96429 0.82020 0.91283 1.86514 1.33251 1.93129 1.23140 1.22882 0.94949 0.84063 0.94014 0.89716 1.86489 1.38525 1.28762 1.82742 1.23735 0.98326 0.93567 0.96030 0.92384 0.98945 0.98990 0.94457 0.94017 0.94048 0.89630 0.88675 0.91695 0.77078 0.77122 0.92684 0.89304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.27 13.65 55.43 0.76 -27.51 16 2 C 0.02 0.48 5.46 -17.82 -0.10 0.38 16 3 Si 1.08 25.87 29.90 -169.99 -5.08 20.78 16 4 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 7 C -0.59 -17.94 9.43 -34.44 -0.32 -18.27 16 8 H 0.06 1.89 7.81 -52.48 -0.41 1.48 16 9 C 0.18 5.11 5.00 36.01 0.18 5.29 16 10 O -0.37 -9.10 10.25 -35.23 -0.36 -9.46 16 11 C 0.06 1.08 5.81 37.16 0.22 1.30 16 12 C 0.06 0.82 5.20 -3.82 -0.02 0.80 16 13 N -0.50 -7.66 5.19 -231.25 -1.20 -8.86 16 14 C 0.01 0.17 5.87 -2.84 -0.02 0.15 16 15 C 0.09 1.13 4.06 -24.91 -0.10 1.02 16 16 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 17 O -0.56 -6.97 13.39 -35.23 -0.47 -7.44 16 18 C 0.10 1.21 4.15 -24.60 -0.10 1.11 16 19 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 20 O -0.56 -6.13 13.47 -35.23 -0.47 -6.61 16 21 C 0.01 0.14 6.46 -2.30 -0.01 0.12 16 22 H 0.27 8.18 7.22 -40.82 -0.29 7.88 16 23 H -0.01 -0.20 8.01 -51.93 -0.42 -0.62 16 24 H -0.01 -0.21 8.01 -51.93 -0.42 -0.63 16 25 H 0.04 0.66 6.14 -51.93 -0.32 0.34 16 26 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.04 0.51 8.00 -51.93 -0.42 0.09 16 28 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.10 1.53 8.06 -51.93 -0.42 1.12 16 30 H 0.06 0.85 6.04 -51.93 -0.31 0.54 16 31 H 0.38 3.09 9.12 45.56 0.42 3.51 16 32 H 0.38 2.35 9.11 45.56 0.42 2.77 16 33 H 0.05 0.59 7.72 -51.93 -0.40 0.19 16 34 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 284.56 15.07 4.29 4.29 Total: -1.00 -35.70 284.56 -6.31 -42.00 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -3.48 Total: 0.90 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -0.28 Total: -8.08 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: -0.44 Total: -36.38 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -1.31 Total: -23.52 kcal Atomic # 14 Polarization: 25.87 SS G_CDS: -5.08 Total: 20.78 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -35.70 -6.31 -42.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395502219.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.151 kcal (2) G-P(sol) polarization free energy of solvation -35.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds