Wall clock time and date at job start Mon Mar 30 2020 03:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00003 * 2 1 4 4 H 1.48497 * 109.47531 * 270.00344 * 3 2 1 5 5 H 1.48507 * 109.47062 * 150.00507 * 3 2 1 6 6 H 1.48498 * 109.47281 * 30.00796 * 3 2 1 7 7 C 1.37870 * 120.00070 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00719 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99930 * 359.97438 * 7 2 1 10 10 O 1.42903 * 109.47072 * 180.02562 * 9 7 2 11 11 C 1.42909 * 113.99866 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.46716 * 180.02562 * 11 10 9 13 13 N 1.46900 * 109.47422 * 63.26146 * 12 11 10 14 14 C 1.47438 * 110.99921 * 55.46001 * 13 12 11 15 15 C 1.54320 * 107.23326 * 123.26224 * 14 13 12 16 16 H 1.09009 * 110.85225 * 263.82781 * 15 14 13 17 17 O 1.42895 * 110.70985 * 140.66658 * 15 14 13 18 18 C 1.55134 * 103.01895 * 22.27897 * 15 14 13 19 19 H 1.09002 * 110.99132 * 82.44297 * 18 15 14 20 20 O 1.42900 * 110.99259 * 206.25883 * 18 15 14 21 21 C 1.47843 * 110.99955 * 176.30194 * 13 12 11 22 22 H 0.96998 * 120.00447 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47267 * 300.00059 * 9 7 2 24 24 H 1.09003 * 109.46979 * 60.00809 * 9 7 2 25 25 H 1.08994 * 109.46728 * 300.00138 * 11 10 9 26 26 H 1.08999 * 109.46674 * 60.00246 * 11 10 9 27 27 H 1.09006 * 109.46997 * 183.25909 * 12 11 10 28 28 H 1.09005 * 109.47207 * 303.25681 * 12 11 10 29 29 H 1.09003 * 109.88663 * 242.66345 * 14 13 12 30 30 H 1.09005 * 109.89226 * 3.85254 * 14 13 12 31 31 H 0.96705 * 114.00252 * 66.39632 * 17 15 14 32 32 H 0.96694 * 114.00108 * 173.72664 * 20 18 15 33 33 H 1.08998 * 110.37696 * 332.46653 * 21 13 12 34 34 H 1.09003 * 110.37166 * 94.69475 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 3.5467 1.4401 0.7000 6 1 1.4467 2.6526 0.7002 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.5650 -4.8754 -0.0011 12 6 2.6480 -5.9562 -0.0004 13 7 3.4339 -5.8611 1.2370 14 6 2.5626 -5.9412 2.4237 15 6 3.0682 -7.1188 3.2835 16 1 2.4972 -8.0239 3.0760 17 8 3.0069 -6.7925 4.6734 18 6 4.5405 -7.2812 2.8225 19 1 5.1907 -6.5722 3.3351 20 8 4.9934 -8.6223 3.0188 21 6 4.4347 -6.9466 1.3137 22 1 -0.4851 -0.8400 0.0004 23 1 0.6246 -2.5571 0.8897 24 1 0.6240 -2.5567 -0.8904 25 1 0.9446 -4.9826 0.8886 26 1 0.9452 -4.9821 -0.8914 27 1 2.1804 -6.9391 -0.0593 28 1 3.3039 -5.8138 -0.8593 29 1 2.6246 -5.0134 2.9925 30 1 1.5326 -6.1220 2.1161 31 1 2.1081 -6.6800 5.0118 32 1 5.8735 -8.7969 2.6584 33 1 4.0932 -7.8178 0.7548 34 1 5.3961 -6.6040 0.9310 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395502219.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:28 Heat of formation + Delta-G solvation = -170.971327 kcal Electronic energy + Delta-G solvation = -16511.627285 eV Core-core repulsion = 13636.355059 eV Total energy + Delta-G solvation = -2875.272226 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 231.130 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.81172 -38.77789 -37.13297 -36.98083 -35.19936 -32.26353 -29.56473 -29.05363 -27.78651 -24.74468 -24.07922 -22.32771 -21.47030 -19.22928 -19.05099 -18.06165 -17.62010 -17.23226 -16.58318 -16.09275 -15.80646 -15.59605 -14.83991 -14.75907 -14.60462 -14.29441 -13.90597 -13.63855 -13.57907 -13.13488 -12.93101 -12.67476 -12.46371 -11.94980 -11.88221 -11.50848 -11.34670 -11.12770 -10.85459 -10.82784 -10.32455 -9.31951 -8.83625 -6.54097 1.52460 1.62158 1.82441 2.49044 2.62799 2.90672 3.03408 3.06065 3.32353 3.38389 3.88732 3.91332 4.04198 4.06640 4.15617 4.26961 4.41592 4.44046 4.52088 4.53511 4.76343 4.80323 4.84368 4.91174 4.96861 5.68130 5.84240 5.88859 5.97662 6.34110 6.69370 6.69654 6.75427 7.26557 8.57657 Molecular weight = 231.13amu Principal moments of inertia in cm(-1) A = 0.037848 B = 0.005057 C = 0.004939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.619067 B = 5535.411788 C = 5667.744032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.028 4.028 3 Si 1.130 2.870 4 H -0.266 1.266 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.622 4.622 8 H 0.051 0.949 9 C 0.196 3.804 10 O -0.389 6.389 11 C 0.048 3.952 12 C 0.064 3.936 13 N -0.536 5.536 14 C 0.016 3.984 15 C 0.095 3.905 16 H 0.083 0.917 17 O -0.572 6.572 18 C 0.104 3.896 19 H 0.072 0.928 20 O -0.567 6.567 21 C 0.019 3.981 22 H 0.255 0.745 23 H -0.021 1.021 24 H -0.018 1.018 25 H 0.043 0.957 26 H 0.052 0.948 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.398 0.602 32 H 0.401 0.599 33 H 0.073 0.927 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.703 -16.877 3.708 18.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.225 4.225 3 Si 0.949 3.051 4 H -0.192 1.192 5 H -0.197 1.197 6 H -0.200 1.200 7 C -0.659 4.659 8 H 0.069 0.931 9 C 0.121 3.879 10 O -0.308 6.308 11 C -0.029 4.029 12 C -0.064 4.064 13 N -0.263 5.263 14 C -0.112 4.112 15 C 0.034 3.966 16 H 0.101 0.899 17 O -0.380 6.380 18 C 0.044 3.956 19 H 0.089 0.911 20 O -0.376 6.376 21 C -0.108 4.108 22 H 0.065 0.935 23 H -0.003 1.003 24 H -0.001 1.001 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.096 0.904 28 H 0.103 0.897 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.249 0.751 32 H 0.252 0.748 33 H 0.091 0.909 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 7.025 -14.867 3.934 16.907 hybrid contribution -1.034 -2.325 -0.293 2.561 sum 5.991 -17.192 3.641 18.566 Atomic orbital electron populations 1.70898 1.07700 1.29800 1.48149 1.27579 0.96459 1.06523 0.91965 0.82795 0.73951 0.70148 0.78231 1.19157 1.19691 1.19974 1.22278 0.95305 0.92146 1.56168 0.93099 1.19938 0.89303 0.86119 0.92562 1.87948 1.34158 1.13708 1.94997 1.22805 0.95709 0.84555 0.99827 1.22299 0.94955 0.96018 0.93114 1.63389 1.15392 1.45747 1.01772 1.23507 0.96895 0.98673 0.92160 1.22943 0.96055 0.95938 0.81614 0.89930 1.86476 1.35104 1.93142 1.23257 1.22730 0.94511 0.84386 0.93943 0.91051 1.86448 1.40271 1.27779 1.83075 1.23730 0.97724 0.93214 0.96160 0.93541 1.00303 1.00076 0.93883 0.92940 0.90443 0.89675 0.91717 0.91017 0.75135 0.74763 0.90866 0.88592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.88 13.65 21.44 0.29 -57.58 16 2 C -0.03 -1.66 5.46 84.65 0.46 -1.19 16 3 Si 1.13 51.22 29.90 68.60 2.05 53.27 16 4 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 5 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 7 C -0.62 -38.18 9.43 25.60 0.24 -37.94 16 8 H 0.05 3.16 7.81 -2.91 -0.02 3.14 16 9 C 0.20 11.11 5.00 71.24 0.36 11.47 16 10 O -0.39 -19.37 10.25 -148.98 -1.53 -20.89 16 11 C 0.05 1.74 5.81 71.98 0.42 2.16 16 12 C 0.06 1.78 5.20 86.30 0.45 2.23 16 13 N -0.54 -15.64 5.19 -885.54 -4.60 -20.24 16 14 C 0.02 0.44 5.87 86.65 0.51 0.95 16 15 C 0.09 2.22 4.06 31.77 0.13 2.35 16 16 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 17 O -0.57 -13.84 13.39 -148.98 -1.99 -15.83 16 18 C 0.10 2.34 4.15 31.98 0.13 2.47 16 19 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 20 O -0.57 -11.05 13.47 -148.98 -2.01 -13.05 16 21 C 0.02 0.42 6.46 86.77 0.56 0.98 16 22 H 0.26 16.03 7.22 -92.71 -0.67 15.36 16 23 H -0.02 -1.20 8.01 -2.39 -0.02 -1.22 16 24 H -0.02 -1.06 8.01 -2.39 -0.02 -1.08 16 25 H 0.04 1.50 6.14 -2.39 -0.01 1.49 16 26 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.08 1.63 8.00 -2.38 -0.02 1.62 16 28 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 29 H 0.06 2.15 8.06 -2.39 -0.02 2.13 16 30 H 0.07 1.82 6.04 -2.38 -0.01 1.80 16 31 H 0.40 6.12 9.12 -74.05 -0.68 5.44 16 32 H 0.40 3.91 9.11 -74.06 -0.67 3.23 16 33 H 0.07 1.32 7.72 -2.39 -0.02 1.30 16 34 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -76.22 284.56 -4.67 -80.89 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -0.14 Total: 9.98 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: 3.26 Total: -16.54 kcal Atomic # 7 Polarization: -73.52 SS G_CDS: -4.30 Total: -77.82 kcal Atomic # 8 Polarization: -44.25 SS G_CDS: -5.53 Total: -49.78 kcal Atomic # 14 Polarization: 51.22 SS G_CDS: 2.05 Total: 53.27 kcal Total: -76.22 -4.67 -80.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395502219.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.081 kcal (2) G-P(sol) polarization free energy of solvation -76.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds