Wall clock time and date at job start Mon Mar 30 2020 03:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39660 * 120.14928 * 52.70558 * 3 2 1 5 5 C 1.50697 * 120.07491 * 0.02562 * 4 3 2 6 6 C 1.50695 * 109.47240 * 85.23504 * 5 4 3 7 7 H 1.07996 * 120.00097 * 359.97438 * 6 5 4 8 8 C 1.37883 * 120.00158 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00274 * 179.97438 * 8 6 5 10 10 Si 1.86807 * 119.99748 * 0.02562 * 8 6 5 11 11 H 1.48499 * 109.47051 * 89.99780 * 10 8 6 12 12 H 1.48494 * 109.46908 * 209.99672 * 10 8 6 13 13 H 1.48501 * 109.47081 * 329.99662 * 10 8 6 14 14 C 1.37929 * 119.84238 * 180.25316 * 4 3 2 15 15 C 1.38380 * 120.15114 * 359.79131 * 14 4 3 16 16 C 1.38342 * 120.30861 * 359.95907 * 15 14 4 17 17 C 1.37967 * 120.15087 * 0.02562 * 16 15 14 18 18 N 1.48007 * 120.07879 * 179.97438 * 17 16 15 19 19 O 1.21803 * 119.99745 * 359.97438 * 18 17 16 20 20 O 1.21799 * 120.00052 * 179.72716 * 18 17 16 21 21 H 1.09003 * 109.46880 * 205.23241 * 5 4 3 22 22 H 1.08998 * 109.47251 * 325.23348 * 5 4 3 23 23 H 0.97001 * 120.00148 * 180.02562 * 9 8 6 24 24 H 1.08004 * 119.91855 * 179.77084 * 14 4 3 25 25 H 1.08000 * 119.84335 * 179.97438 * 15 14 4 26 26 H 1.08001 * 119.92378 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2698 -0.7308 -0.9607 5 6 2.5218 -1.5232 -2.0017 6 6 2.1700 -0.6253 -3.1597 7 1 2.4588 0.4152 -3.1433 8 6 1.4794 -1.1322 -4.2401 9 7 1.1720 -0.3485 -5.2505 10 14 0.9792 -2.9318 -4.2680 11 1 -0.3648 -3.0816 -3.6545 12 1 0.9386 -3.4125 -5.6724 13 1 1.9663 -3.7319 -3.4994 14 6 4.6490 -0.7299 -0.9517 15 6 5.3374 -0.0031 0.0038 16 6 4.6486 0.7278 0.9552 17 6 3.2689 0.7361 0.9576 18 7 2.5336 1.5181 1.9766 19 8 3.1465 2.1550 2.8146 20 8 1.3156 1.5285 1.9743 21 1 3.1485 -2.3424 -2.3544 22 1 1.6086 -1.9267 -1.5643 23 1 0.6858 -0.7050 -6.0104 24 1 5.1930 -1.2981 -1.6918 25 1 6.4174 -0.0062 0.0065 26 1 5.1920 1.2932 1.6977 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396085147.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:01 Heat of formation + Delta-G solvation = 28.712686 kcal Electronic energy + Delta-G solvation = -15264.441671 eV Core-core repulsion = 12503.878308 eV Total energy + Delta-G solvation = -2760.563363 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 232.063 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.38224 -40.78603 -37.97522 -37.33089 -35.67451 -33.81151 -33.01413 -30.05895 -27.82654 -25.55501 -24.31875 -22.72675 -20.47161 -19.77314 -19.27981 -19.08752 -18.72268 -16.96915 -16.54025 -16.20695 -15.45216 -15.09750 -14.57349 -14.22668 -14.06427 -13.83541 -13.71235 -13.27425 -13.21333 -12.76996 -12.56679 -12.37383 -12.24247 -12.14610 -11.91520 -11.71250 -10.87314 -10.49862 -10.03685 -8.37397 -6.44240 -1.41431 -0.29076 0.25504 0.29405 1.31036 1.34668 1.42405 1.58008 1.79197 2.27944 2.48778 2.65740 2.98190 3.26689 3.74523 3.89582 3.99461 4.08688 4.50941 4.65112 4.88969 4.94170 5.05148 5.09459 5.37002 5.42258 5.53755 6.10931 6.34756 6.41857 6.62333 7.20205 8.78458 Molecular weight = 232.06amu Principal moments of inertia in cm(-1) A = 0.032209 B = 0.008228 C = 0.007177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.101442 B = 3402.015389 C = 3900.613124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C 0.259 3.741 3 C 0.003 3.997 4 C -0.006 4.006 5 C 0.010 3.990 6 C -0.522 4.522 7 H 0.036 0.964 8 C 0.016 3.984 9 N -0.943 5.943 10 Si 0.934 3.066 11 H -0.287 1.287 12 H -0.279 1.279 13 H -0.223 1.223 14 C -0.057 4.057 15 C -0.060 4.060 16 C -0.050 4.050 17 C -0.026 4.026 18 N 0.028 4.972 19 O -0.102 6.102 20 O -0.248 6.248 21 H 0.074 0.926 22 H 0.016 0.984 23 H 0.268 0.732 24 H 0.182 0.818 25 H 0.212 0.788 26 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.166 -3.072 11.155 19.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.107 5.107 2 C -0.056 4.056 3 C -0.001 4.001 4 C -0.010 4.010 5 C -0.027 4.027 6 C -0.560 4.560 7 H 0.054 0.946 8 C -0.183 4.183 9 N -0.582 5.582 10 Si 0.757 3.243 11 H -0.213 1.213 12 H -0.204 1.204 13 H -0.146 1.146 14 C -0.074 4.074 15 C -0.078 4.078 16 C -0.069 4.069 17 C -0.112 4.112 18 N 0.544 4.456 19 O -0.337 6.337 20 O -0.440 6.440 21 H 0.092 0.908 22 H 0.034 0.966 23 H 0.077 0.923 24 H 0.199 0.801 25 H 0.229 0.771 26 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 13.479 -3.489 10.445 17.406 hybrid contribution -1.187 -0.018 -0.271 1.218 sum 12.292 -3.507 10.174 16.337 Atomic orbital electron populations 1.81015 1.13306 1.07641 1.08699 1.25533 0.93142 0.94007 0.92925 1.15811 0.84444 1.01705 0.98155 1.20365 0.95717 0.93637 0.91239 1.18869 0.96006 0.96044 0.91823 1.20991 1.36819 0.96418 1.01767 0.94572 1.25862 0.94993 1.02558 0.94841 1.70022 1.40964 1.38219 1.09008 0.85903 0.79646 0.80423 0.78307 1.21319 1.20411 1.14565 1.21990 0.91001 0.96439 0.98012 1.22034 1.03557 0.91815 0.90393 1.21541 0.87854 0.97348 1.00155 1.21316 0.93856 1.02571 0.93453 1.43886 1.01227 0.99466 1.01056 1.94411 1.69216 1.38950 1.31085 1.94664 0.96435 1.71775 1.81139 0.90811 0.96609 0.92290 0.80066 0.77098 0.78792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -21.13 18.38 19.00 0.35 -20.78 15 2 C 0.26 11.55 11.29 88.33 1.00 12.55 15 3 C 0.00 0.12 5.73 -21.36 -0.12 -0.01 15 4 C -0.01 -0.20 5.10 -19.59 -0.10 -0.30 15 5 C 0.01 0.40 3.69 29.10 0.11 0.50 15 6 C -0.52 -27.64 9.65 25.60 0.25 -27.40 15 7 H 0.04 2.14 7.98 -2.91 -0.02 2.12 15 8 C 0.02 0.88 5.47 84.66 0.46 1.35 15 9 N -0.94 -57.36 13.96 21.45 0.30 -57.06 15 10 Si 0.93 41.74 27.47 68.60 1.88 43.62 15 11 H -0.29 -13.39 7.11 99.48 0.71 -12.68 15 12 H -0.28 -12.19 7.11 99.48 0.71 -11.48 15 13 H -0.22 -8.47 6.54 99.48 0.65 -7.82 15 14 C -0.06 -1.12 9.67 22.23 0.21 -0.91 15 15 C -0.06 -0.71 10.04 22.33 0.22 -0.49 15 16 C -0.05 -0.84 9.54 22.23 0.21 -0.63 15 17 C -0.03 -0.77 6.88 36.65 0.25 -0.52 15 18 N 0.03 0.94 4.45 -45.83 -0.20 0.74 15 19 O -0.10 -3.00 18.45 18.88 0.35 -2.65 15 20 O -0.25 -10.27 16.37 18.89 0.31 -9.96 15 21 H 0.07 2.60 7.11 -2.39 -0.02 2.58 15 22 H 0.02 0.69 6.70 -2.39 -0.02 0.68 15 23 H 0.27 15.32 8.31 -92.71 -0.77 14.55 15 24 H 0.18 2.58 8.06 -2.91 -0.02 2.55 15 25 H 0.21 0.19 8.06 -2.91 -0.02 0.17 15 26 H 0.20 1.89 7.61 -2.91 -0.02 1.87 15 Total: -1.00 -76.06 250.72 6.65 -69.41 By element: Atomic # 1 Polarization: -8.64 SS G_CDS: 1.17 Total: -7.47 kcal Atomic # 6 Polarization: -18.34 SS G_CDS: 2.50 Total: -15.84 kcal Atomic # 7 Polarization: -77.55 SS G_CDS: 0.44 Total: -77.11 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: 0.66 Total: -12.61 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 1.88 Total: 43.62 kcal Total: -76.06 6.65 -69.41 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396085147.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.120 kcal (2) G-P(sol) polarization free energy of solvation -76.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds