Wall clock time and date at job start Mon Mar 30 2020 03:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30656 * 1 3 3 Si 1.86800 * 119.99773 * 2 1 4 4 H 1.48498 * 109.46992 * 239.99555 * 3 2 1 5 5 H 1.48496 * 109.47390 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46882 * 119.99856 * 3 2 1 7 7 C 1.40294 * 120.00170 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00469 * 197.72773 * 7 2 1 9 9 C 1.40432 * 119.99799 * 17.72558 * 7 2 1 10 10 C 1.40740 * 120.68975 * 24.19296 * 9 7 2 11 11 C 1.37742 * 120.20601 * 180.02562 * 10 9 7 12 12 C 1.38350 * 121.50379 * 0.02562 * 11 10 9 13 13 C 1.38943 * 120.98629 * 359.97438 * 12 11 10 14 14 N 1.37609 * 133.96164 * 179.97438 * 13 12 11 15 15 H 0.96996 * 126.51049 * 0.02562 * 14 13 12 16 16 C 1.37002 * 106.97677 * 179.97438 * 14 13 12 17 17 C 1.47623 * 125.21023 * 179.97438 * 16 14 13 18 18 O 1.21494 * 119.99601 * 0.02562 * 17 16 14 19 19 O 1.34779 * 119.99793 * 180.02562 * 17 16 14 20 20 N 1.31386 * 109.57671 * 0.22823 * 16 14 13 21 21 C 1.33457 * 109.78673 * 359.62042 * 20 16 14 22 22 H 0.96997 * 120.00108 * 0.02562 * 1 2 3 23 23 H 1.07998 * 119.90028 * 0.02562 * 10 9 7 24 24 H 1.07998 * 119.24916 * 180.02562 * 11 10 9 25 25 H 1.08000 * 119.51214 * 179.97438 * 12 11 10 26 26 H 0.96706 * 116.99758 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2405 1.6178 0.0000 4 1 3.0943 1.6964 -1.2124 5 1 1.2755 2.7465 0.0006 6 1 3.0942 1.6964 1.2126 7 6 2.0081 -1.2150 0.0005 8 1 3.0496 -1.2371 0.2853 9 6 1.3559 -2.4024 -0.3692 10 6 0.2197 -2.3695 -1.1991 11 6 -0.4126 -3.5403 -1.5552 12 6 0.0420 -4.7704 -1.1143 13 6 1.1584 -4.8680 -0.2930 14 7 1.8274 -5.9206 0.2886 15 1 1.6033 -6.8610 0.2097 16 6 2.8706 -5.3880 0.9991 17 6 3.8511 -6.1648 1.7830 18 8 3.7673 -7.3758 1.8316 19 8 4.8391 -5.5304 2.4448 20 7 2.8615 -4.0795 0.8804 21 6 1.8453 -3.7036 0.1013 22 1 -0.4850 0.8400 -0.0004 23 1 -0.1577 -1.4234 -1.5579 24 1 -1.2830 -3.4971 -2.1931 25 1 -0.4787 -5.6682 -1.4130 26 1 5.4573 -6.0815 2.9442 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396135141.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:15 Heat of formation + Delta-G solvation = -29.662551 kcal Electronic energy + Delta-G solvation = -15224.630752 eV Core-core repulsion = 12461.536049 eV Total energy + Delta-G solvation = -2763.094703 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 232.063 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.03253 -39.37327 -36.10507 -35.74049 -33.81728 -32.04562 -29.31640 -28.60460 -25.61620 -24.19632 -21.24266 -20.57728 -20.23003 -18.16467 -17.59637 -16.83373 -15.78669 -15.55837 -15.49773 -14.98573 -13.81856 -13.59141 -13.26310 -13.06058 -12.64976 -11.91542 -11.47048 -11.36931 -11.31781 -10.80217 -10.61130 -10.39190 -10.31273 -10.09265 -9.78124 -9.32493 -9.00519 -7.37876 -7.30096 -7.08046 -4.55691 1.49270 2.59945 2.90296 2.91538 2.93388 2.96268 3.11922 3.66849 4.04706 4.23426 4.31925 5.13325 5.42918 5.78248 6.17775 6.32778 6.49452 6.64565 6.66758 6.70043 6.98614 7.26278 7.57598 7.61630 7.76071 7.94938 8.08610 8.26644 8.34325 8.43069 8.54476 8.95072 9.69055 Molecular weight = 232.06amu Principal moments of inertia in cm(-1) A = 0.027844 B = 0.008278 C = 0.006496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.367642 B = 3381.766209 C = 4309.325250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.746 5.746 2 C 0.068 3.932 3 Si 0.922 3.078 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.387 4.387 8 H 0.096 0.904 9 C 0.169 3.831 10 C -0.232 4.232 11 C -0.025 4.025 12 C -0.301 4.301 13 C 0.137 3.863 14 N -0.581 5.581 15 H 0.416 0.584 16 C 0.105 3.895 17 C 0.584 3.416 18 O -0.540 6.540 19 O -0.491 6.491 20 N -0.376 5.376 21 C -0.043 4.043 22 H 0.292 0.708 23 H 0.126 0.874 24 H 0.097 0.903 25 H 0.090 0.910 26 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.432 -1.881 0.282 3.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.367 5.367 2 C -0.157 4.157 3 Si 0.745 3.255 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.182 1.182 7 C -0.414 4.414 8 H 0.114 0.886 9 C 0.164 3.836 10 C -0.254 4.254 11 C -0.045 4.045 12 C -0.325 4.325 13 C 0.025 3.975 14 N -0.196 5.196 15 H 0.253 0.747 16 C -0.146 4.146 17 C 0.429 3.571 18 O -0.431 6.431 19 O -0.299 6.299 20 N -0.099 5.099 21 C -0.172 4.172 22 H 0.104 0.896 23 H 0.143 0.857 24 H 0.115 0.885 25 H 0.108 0.892 26 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 2.624 -1.269 0.578 2.971 hybrid contribution -0.085 -0.865 0.015 0.869 sum 2.539 -2.134 0.593 3.369 Atomic orbital electron populations 1.69761 1.08129 1.30855 1.28003 1.26295 0.94950 1.02423 0.92024 0.86094 0.80173 0.78422 0.80806 1.18100 1.19819 1.18219 1.19935 0.98821 0.90619 1.32007 0.88575 1.17872 0.90343 0.87683 0.87694 1.20894 1.01265 0.97225 1.05997 1.20365 0.96490 0.91930 0.95755 1.18887 1.02362 0.97212 1.14067 1.18879 0.95435 0.86715 0.96504 1.42195 1.25279 1.08699 1.43439 0.74670 1.20169 0.96625 0.88950 1.08874 1.18886 0.78622 0.83872 0.75707 1.90862 1.74505 1.14804 1.62894 1.84674 1.39613 1.44271 1.61383 1.69473 1.19384 1.07956 1.13098 1.20147 0.97461 0.93999 1.05597 0.89613 0.85674 0.88457 0.89226 0.73318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -17.18 10.94 55.57 0.61 -16.57 15 2 C 0.07 1.53 5.15 -17.28 -0.09 1.44 15 3 Si 0.92 16.79 29.60 -169.99 -5.03 11.76 15 4 H -0.26 -4.64 7.11 56.52 0.40 -4.24 15 5 H -0.27 -4.76 7.11 56.52 0.40 -4.36 15 6 H -0.26 -4.73 7.11 56.52 0.40 -4.32 15 7 C -0.39 -9.69 9.09 -37.98 -0.35 -10.03 15 8 H 0.10 2.39 7.91 -52.49 -0.42 1.97 15 9 C 0.17 4.39 5.74 -104.68 -0.60 3.79 15 10 C -0.23 -5.64 8.70 -38.82 -0.34 -5.98 15 11 C -0.03 -0.56 9.94 -39.72 -0.39 -0.95 15 12 C -0.30 -6.64 10.02 -39.28 -0.39 -7.04 15 13 C 0.14 3.23 7.29 -84.03 -0.61 2.62 15 14 N -0.58 -12.21 6.24 -8.45 -0.05 -12.27 15 15 H 0.42 7.38 8.96 -40.82 -0.37 7.01 15 16 C 0.10 2.33 7.93 -154.30 -1.22 1.10 15 17 C 0.58 11.06 8.34 34.56 0.29 11.35 15 18 O -0.54 -10.44 17.87 -19.26 -0.34 -10.79 15 19 O -0.49 -7.71 13.42 -40.71 -0.55 -8.25 15 20 N -0.38 -9.39 11.19 -7.26 -0.08 -9.47 15 21 C -0.04 -1.11 7.19 -82.74 -0.59 -1.70 15 22 H 0.29 5.97 8.29 -40.82 -0.34 5.63 15 23 H 0.13 3.02 6.15 -52.49 -0.32 2.70 15 24 H 0.10 1.84 8.06 -52.49 -0.42 1.42 15 25 H 0.09 1.75 8.06 -52.49 -0.42 1.33 15 26 H 0.41 3.77 9.11 45.56 0.42 4.19 15 LS Contribution 246.53 15.07 3.72 3.72 Total: -1.00 -29.26 246.53 -6.70 -35.97 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -0.67 Total: 11.31 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -4.30 Total: -5.40 kcal Atomic # 7 Polarization: -38.78 SS G_CDS: 0.47 Total: -38.31 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -0.89 Total: -19.04 kcal Atomic # 14 Polarization: 16.79 SS G_CDS: -5.03 Total: 11.76 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -29.26 -6.70 -35.97 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396135141.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.305 kcal (2) G-P(sol) polarization free energy of solvation -29.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds