Wall clock time and date at job start Mon Mar 30 2020 03:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30656 * 1 3 3 Si 1.86800 * 119.99773 * 2 1 4 4 H 1.48498 * 109.46992 * 239.99555 * 3 2 1 5 5 H 1.48496 * 109.47390 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46882 * 119.99856 * 3 2 1 7 7 C 1.40294 * 120.00170 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00469 * 197.72773 * 7 2 1 9 9 C 1.40432 * 119.99799 * 17.72558 * 7 2 1 10 10 C 1.40740 * 120.68975 * 24.19296 * 9 7 2 11 11 C 1.37742 * 120.20601 * 180.02562 * 10 9 7 12 12 C 1.38350 * 121.50379 * 0.02562 * 11 10 9 13 13 C 1.38943 * 120.98629 * 359.97438 * 12 11 10 14 14 N 1.37609 * 133.96164 * 179.97438 * 13 12 11 15 15 H 0.96996 * 126.51049 * 0.02562 * 14 13 12 16 16 C 1.37002 * 106.97677 * 179.97438 * 14 13 12 17 17 C 1.47623 * 125.21023 * 179.97438 * 16 14 13 18 18 O 1.21494 * 119.99601 * 0.02562 * 17 16 14 19 19 O 1.34779 * 119.99793 * 180.02562 * 17 16 14 20 20 N 1.31386 * 109.57671 * 0.22823 * 16 14 13 21 21 C 1.33457 * 109.78673 * 359.62042 * 20 16 14 22 22 H 0.96997 * 120.00108 * 0.02562 * 1 2 3 23 23 H 1.07998 * 119.90028 * 0.02562 * 10 9 7 24 24 H 1.07998 * 119.24916 * 180.02562 * 11 10 9 25 25 H 1.08000 * 119.51214 * 179.97438 * 12 11 10 26 26 H 0.96706 * 116.99758 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2405 1.6178 0.0000 4 1 3.0943 1.6964 -1.2124 5 1 1.2755 2.7465 0.0006 6 1 3.0942 1.6964 1.2126 7 6 2.0081 -1.2150 0.0005 8 1 3.0496 -1.2371 0.2853 9 6 1.3559 -2.4024 -0.3692 10 6 0.2197 -2.3695 -1.1991 11 6 -0.4126 -3.5403 -1.5552 12 6 0.0420 -4.7704 -1.1143 13 6 1.1584 -4.8680 -0.2930 14 7 1.8274 -5.9206 0.2886 15 1 1.6033 -6.8610 0.2097 16 6 2.8706 -5.3880 0.9991 17 6 3.8511 -6.1648 1.7830 18 8 3.7673 -7.3758 1.8316 19 8 4.8391 -5.5304 2.4448 20 7 2.8615 -4.0795 0.8804 21 6 1.8453 -3.7036 0.1013 22 1 -0.4850 0.8400 -0.0004 23 1 -0.1577 -1.4234 -1.5579 24 1 -1.2830 -3.4971 -2.1931 25 1 -0.4787 -5.6682 -1.4130 26 1 5.4573 -6.0815 2.9442 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396135141.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:15 Heat of formation + Delta-G solvation = -49.505527 kcal Electronic energy + Delta-G solvation = -15225.491208 eV Core-core repulsion = 12461.536049 eV Total energy + Delta-G solvation = -2763.955159 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 232.063 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.77903 -40.87770 -37.83234 -37.18753 -35.54471 -33.82066 -31.09348 -30.34973 -27.36260 -25.87065 -23.01304 -22.25854 -21.93243 -19.87419 -19.09879 -18.51101 -17.47211 -17.28858 -17.05110 -16.58333 -15.51266 -15.22841 -15.00250 -14.64896 -14.20201 -13.57697 -13.24039 -12.89717 -12.70676 -12.35668 -12.22068 -12.08337 -11.94050 -11.84319 -11.54691 -11.02337 -10.79788 -9.16718 -9.05941 -8.80488 -6.37802 -0.16914 0.94989 1.21772 1.38858 1.40737 1.52894 1.57673 2.16842 2.31385 2.59579 2.63085 3.54731 3.61355 4.16435 4.45210 4.63623 4.76645 4.95200 4.96588 5.23936 5.32180 5.47195 5.78660 5.84090 6.02630 6.15269 6.48583 6.54100 6.64706 6.74233 6.90080 7.18185 8.05795 Molecular weight = 232.06amu Principal moments of inertia in cm(-1) A = 0.027844 B = 0.008278 C = 0.006496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.367642 B = 3381.766209 C = 4309.325250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.036 3.964 3 Si 0.993 3.007 4 H -0.255 1.255 5 H -0.256 1.256 6 H -0.261 1.261 7 C -0.426 4.426 8 H 0.082 0.918 9 C 0.139 3.861 10 C -0.251 4.251 11 C -0.026 4.026 12 C -0.296 4.296 13 C 0.122 3.878 14 N -0.567 5.567 15 H 0.432 0.568 16 C 0.114 3.886 17 C 0.597 3.403 18 O -0.539 6.539 19 O -0.485 6.485 20 N -0.412 5.412 21 C -0.081 4.081 22 H 0.304 0.696 23 H 0.119 0.881 24 H 0.131 0.869 25 H 0.121 0.879 26 H 0.439 0.561 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.629 -2.547 0.406 3.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.186 4.186 3 Si 0.811 3.189 4 H -0.179 1.179 5 H -0.179 1.179 6 H -0.185 1.185 7 C -0.452 4.452 8 H 0.100 0.900 9 C 0.134 3.866 10 C -0.273 4.273 11 C -0.046 4.046 12 C -0.320 4.320 13 C 0.008 3.992 14 N -0.183 5.183 15 H 0.273 0.727 16 C -0.140 4.140 17 C 0.441 3.559 18 O -0.430 6.430 19 O -0.298 6.298 20 N -0.135 5.135 21 C -0.208 4.208 22 H 0.115 0.885 23 H 0.137 0.863 24 H 0.149 0.851 25 H 0.139 0.861 26 H 0.302 0.698 Dipole moment (debyes) X Y Z Total from point charges 2.811 -1.965 0.704 3.501 hybrid contribution -0.070 -0.893 0.066 0.898 sum 2.741 -2.858 0.770 4.034 Atomic orbital electron populations 1.69753 1.09238 1.32366 1.28175 1.27043 0.95664 1.04884 0.90999 0.85081 0.78934 0.74419 0.80444 1.17922 1.17936 1.18491 1.20023 0.98583 0.92044 1.34544 0.89987 1.18272 0.91415 0.88376 0.88551 1.20937 1.01716 0.97958 1.06675 1.20725 0.97083 0.91229 0.95570 1.19273 1.01608 0.98354 1.12727 1.19089 0.96083 0.86723 0.97265 1.42148 1.24523 1.09186 1.42474 0.72735 1.20891 0.96685 0.88760 1.07705 1.18423 0.78682 0.83309 0.75525 1.90874 1.74621 1.14631 1.62842 1.84616 1.39247 1.44893 1.60995 1.69429 1.20212 1.09461 1.14412 1.20461 0.98586 0.94970 1.06782 0.88472 0.86289 0.85102 0.86143 0.69757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -36.28 10.94 21.89 0.24 -36.04 15 2 C 0.04 1.66 5.15 85.37 0.44 2.10 15 3 Si 0.99 34.68 29.60 68.60 2.03 36.71 15 4 H -0.26 -8.76 7.11 99.48 0.71 -8.05 15 5 H -0.26 -8.11 7.11 99.48 0.71 -7.40 15 6 H -0.26 -9.11 7.11 99.48 0.71 -8.41 15 7 C -0.43 -22.27 9.09 23.30 0.21 -22.05 15 8 H 0.08 4.33 7.91 -2.91 -0.02 4.30 15 9 C 0.14 7.47 5.74 -19.90 -0.11 7.35 15 10 C -0.25 -12.46 8.70 22.76 0.20 -12.26 15 11 C -0.03 -1.13 9.94 22.18 0.22 -0.91 15 12 C -0.30 -12.61 10.02 22.47 0.23 -12.39 15 13 C 0.12 5.66 7.29 39.04 0.28 5.94 15 14 N -0.57 -23.05 6.24 -180.65 -1.13 -24.18 15 15 H 0.43 14.35 8.96 -92.71 -0.83 13.52 15 16 C 0.11 4.95 7.93 136.30 1.08 6.03 15 17 C 0.60 21.26 8.34 70.30 0.59 21.85 15 18 O -0.54 -19.28 17.87 19.85 0.35 -18.93 15 19 O -0.49 -13.98 13.42 -56.90 -0.76 -14.74 15 20 N -0.41 -20.80 11.19 -176.90 -1.98 -22.78 15 21 C -0.08 -4.27 7.19 41.76 0.30 -3.97 15 22 H 0.30 12.44 8.29 -92.71 -0.77 11.67 15 23 H 0.12 5.92 6.15 -2.91 -0.02 5.90 15 24 H 0.13 4.67 8.06 -2.91 -0.02 4.64 15 25 H 0.12 4.32 8.06 -2.91 -0.02 4.30 15 26 H 0.44 6.56 9.11 -74.05 -0.67 5.88 15 Total: -1.00 -63.85 246.53 1.94 -61.91 By element: Atomic # 1 Polarization: 26.60 SS G_CDS: -0.24 Total: 26.36 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: 3.43 Total: -8.31 kcal Atomic # 7 Polarization: -80.13 SS G_CDS: -2.87 Total: -83.00 kcal Atomic # 8 Polarization: -33.26 SS G_CDS: -0.41 Total: -33.67 kcal Atomic # 14 Polarization: 34.68 SS G_CDS: 2.03 Total: 36.71 kcal Total: -63.85 1.94 -61.91 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396135141.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.402 kcal (2) G-P(sol) polarization free energy of solvation -63.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds