Wall clock time and date at job start Mon Mar 30 2020 03:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.46934 * 2 1 4 4 H 1.09003 * 109.47295 * 180.32524 * 3 2 1 5 5 C 1.50706 * 109.47305 * 300.32308 * 3 2 1 6 6 H 1.07996 * 119.99938 * 119.99853 * 5 3 2 7 7 C 1.37877 * 119.99743 * 299.99899 * 5 3 2 8 8 N 1.31515 * 120.00233 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99770 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46768 * 90.00451 * 9 7 5 11 11 H 1.48503 * 109.47106 * 209.99994 * 9 7 5 12 12 H 1.48496 * 109.47142 * 330.00414 * 9 7 5 13 13 N 1.46899 * 109.47335 * 60.32355 * 3 2 1 14 14 C 1.48564 * 111.00299 * 176.76435 * 13 3 2 15 15 C 1.54373 * 104.59487 * 200.95785 * 14 13 3 16 16 H 1.09000 * 117.60954 * 244.71595 * 15 14 13 17 17 C 1.54260 * 105.06151 * 23.85550 * 15 14 13 18 18 H 1.09003 * 121.78372 * 222.12920 * 17 15 14 19 19 C 1.48561 * 111.00293 * 61.34467 * 13 3 2 20 20 C 1.53008 * 118.12792 * 89.19381 * 15 14 13 21 21 F 1.39902 * 117.44110 * 15.98309 * 20 15 14 22 22 F 1.39899 * 117.44147 * 160.68192 * 20 15 14 23 23 H 1.09004 * 109.47429 * 65.09594 * 1 2 3 24 24 H 1.09002 * 109.46868 * 185.08881 * 1 2 3 25 25 H 1.09003 * 109.47514 * 305.09289 * 1 2 3 26 26 H 1.08993 * 109.47321 * 240.00123 * 2 1 3 27 27 H 1.09003 * 109.47118 * 119.99917 * 2 1 3 28 28 H 0.96999 * 120.00169 * 180.02562 * 8 7 5 29 29 H 1.08999 * 110.40936 * 319.73802 * 14 13 3 30 30 H 1.08998 * 110.41255 * 82.06127 * 14 13 3 31 31 H 1.09004 * 110.40579 * 277.82534 * 19 13 3 32 32 H 1.09003 * 110.40796 * 40.25696 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1299 1.4426 -0.0058 5 6 1.5310 2.1552 -1.2265 6 1 0.9106 3.0331 -1.1224 7 6 1.8575 1.6866 -2.4814 8 7 2.6126 0.6172 -2.6081 9 14 1.2262 2.5696 -4.0016 10 1 2.2018 3.6124 -4.4092 11 1 1.0556 1.5924 -5.1066 12 1 -0.0806 3.2061 -3.6974 13 7 1.5566 2.1327 1.2033 14 6 2.0962 3.5150 1.2772 15 6 1.9742 3.9011 2.7668 16 1 1.2986 4.7170 3.0235 17 6 1.9544 2.5597 3.5283 18 1 1.2735 2.3821 4.3608 19 6 2.0659 1.4759 2.4347 20 6 3.1441 3.5704 3.6959 21 9 4.3716 3.2592 3.1012 22 9 3.2210 4.2647 4.9080 23 1 -0.3634 0.4328 -0.9321 24 1 -0.3633 -1.0236 0.0912 25 1 -0.3634 0.5908 0.8409 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.8426 0.2877 -3.4909 29 1 3.1401 3.5327 0.9641 30 1 1.5030 4.1882 0.6583 31 1 1.4487 0.6142 2.6888 32 1 3.1051 1.1745 2.3027 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715418411.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:50 Heat of formation + Delta-G solvation = -56.395277 kcal Electronic energy + Delta-G solvation = -16897.118848 eV Core-core repulsion = 13915.727497 eV Total energy + Delta-G solvation = -2981.391351 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 231.113 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.45538 -47.16250 -38.99873 -35.14631 -32.06551 -30.52429 -28.20541 -26.45341 -24.04295 -22.53662 -20.86281 -20.19846 -18.93553 -17.62510 -16.61701 -15.96819 -15.66597 -15.40962 -14.35649 -13.93679 -13.71193 -13.51028 -13.34422 -13.13843 -12.63140 -12.35510 -11.90180 -11.65441 -11.40481 -11.18282 -10.93957 -10.77559 -10.55514 -10.40170 -9.94651 -9.75772 -9.50127 -9.45272 -8.88830 -8.46325 -7.46498 -6.04573 -4.08782 2.98371 3.23099 3.28239 3.35512 3.38755 4.36501 4.40383 4.52111 4.74481 5.12364 5.23169 5.29392 5.38504 5.76607 5.85790 6.16992 6.19787 6.37479 6.38339 6.48691 6.58109 6.72991 7.03152 7.12679 7.29330 7.51296 7.64015 7.78819 7.95943 8.24350 8.44008 8.95356 9.55450 11.02063 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.036293 B = 0.007768 C = 0.007160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.311689 B = 3603.712806 C = 3909.433186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.111 4.111 3 C 0.206 3.794 4 H 0.003 0.997 5 C -0.499 4.499 6 H 0.062 0.938 7 C 0.061 3.939 8 N -0.891 5.891 9 Si 0.894 3.106 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.273 1.273 13 N -0.495 5.495 14 C 0.073 3.927 15 C -0.154 4.154 16 H 0.133 0.867 17 C -0.148 4.148 18 H 0.136 0.864 19 C 0.057 3.943 20 C 0.196 3.804 21 F -0.159 7.159 22 F -0.164 7.164 23 H 0.055 0.945 24 H 0.015 0.985 25 H 0.046 0.954 26 H 0.093 0.907 27 H 0.013 0.987 28 H 0.261 0.739 29 H 0.051 0.949 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.297 3.186 9.707 10.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.149 4.149 3 C 0.100 3.900 4 H 0.021 0.979 5 C -0.538 4.538 6 H 0.080 0.920 7 C -0.141 4.141 8 N -0.530 5.530 9 Si 0.722 3.278 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.198 1.198 13 N -0.220 5.220 14 C -0.055 4.055 15 C -0.174 4.174 16 H 0.150 0.850 17 C -0.168 4.168 18 H 0.153 0.847 19 C -0.071 4.071 20 C 0.159 3.841 21 F -0.139 7.139 22 F -0.144 7.144 23 H 0.074 0.926 24 H 0.035 0.965 25 H 0.065 0.935 26 H 0.111 0.889 27 H 0.032 0.968 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.769 3.049 9.505 10.137 hybrid contribution 0.853 0.538 -0.655 1.203 sum -0.916 3.587 8.850 9.593 Atomic orbital electron populations 1.21470 0.97151 0.97364 1.01911 1.21542 0.95339 0.97799 1.00212 1.19508 0.93230 0.91309 0.85913 0.97926 1.20989 1.31318 1.11984 0.89462 0.92002 1.24899 0.95157 0.95056 0.98942 1.69873 1.36994 1.22849 1.23325 0.86554 0.79284 0.79345 0.82598 1.20815 1.21270 1.19821 1.65714 1.53909 1.00302 1.02084 1.22488 0.99852 0.93407 0.89761 1.24903 0.96532 0.99832 0.96123 0.84953 1.25469 0.96237 0.93765 1.01361 0.84665 1.22657 0.99514 0.95526 0.89418 1.21095 0.79234 1.01016 0.82767 1.92998 1.45176 1.93034 1.82728 1.92978 1.96694 1.79869 1.44872 0.92561 0.96541 0.93519 0.88919 0.96811 0.92925 0.93102 0.88777 0.89214 0.93489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.59 9.48 37.16 0.35 -2.24 16 2 C -0.11 -2.55 5.25 -26.73 -0.14 -2.70 16 3 C 0.21 4.95 1.52 -68.86 -0.10 4.85 16 4 H 0.00 0.09 7.98 -51.93 -0.41 -0.33 16 5 C -0.50 -12.97 6.96 -34.44 -0.24 -13.21 16 6 H 0.06 1.61 7.16 -52.49 -0.38 1.24 16 7 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 8 N -0.89 -24.69 11.32 55.43 0.63 -24.06 16 9 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 13 N -0.50 -10.01 4.35 -223.41 -0.97 -10.98 16 14 C 0.07 1.35 5.49 -2.18 -0.01 1.34 16 15 C -0.15 -2.32 6.97 -89.24 -0.62 -2.94 16 16 H 0.13 1.67 8.14 -51.93 -0.42 1.25 16 17 C -0.15 -2.17 7.28 -87.07 -0.63 -2.80 16 18 H 0.14 1.62 8.14 -51.93 -0.42 1.20 16 19 C 0.06 0.99 5.14 -2.19 -0.01 0.98 16 20 C 0.20 3.04 5.26 -24.56 -0.13 2.91 16 21 F -0.16 -2.80 16.44 2.25 0.04 -2.76 16 22 F -0.16 -2.45 17.60 2.25 0.04 -2.41 16 23 H 0.06 1.30 7.40 -51.93 -0.38 0.92 16 24 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.05 0.95 7.46 -51.93 -0.39 0.56 16 26 H 0.09 2.41 6.08 -51.93 -0.32 2.09 16 27 H 0.01 0.28 6.96 -51.93 -0.36 -0.08 16 28 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 29 H 0.05 1.03 7.39 -51.93 -0.38 0.64 16 30 H 0.09 1.74 7.57 -51.93 -0.39 1.35 16 31 H 0.09 1.46 7.67 -51.93 -0.40 1.07 16 32 H 0.05 0.88 7.64 -51.93 -0.40 0.48 16 LS Contribution 265.24 15.07 4.00 4.00 Total: -1.00 -27.04 265.24 -7.14 -34.18 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: -4.21 Total: -1.46 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: -1.63 Total: -12.29 kcal Atomic # 7 Polarization: -34.70 SS G_CDS: -0.34 Total: -35.05 kcal Atomic # 9 Polarization: -5.25 SS G_CDS: 0.08 Total: -5.17 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -27.04 -7.14 -34.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715418411.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.218 kcal (2) G-P(sol) polarization free energy of solvation -27.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds